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PubMed:18507837 / 426-862 JSONTXT

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LitCoin-sentences

Id Subject Object Predicate Lexical cue
T6 0-436 Sentence denotes We examined associations between common germline genetic variation in 13 genes involved in cell cycle control (CCND1, CCND2, CCND3, CCNE1, CDK2 [p33], CDK4, CDK6, CDKN1A [p21, Cip1], CDKN1B [p27, Kip1], CDKN2A [p16], CDKN2B [p15], CDKN2C [p18], and CDKN2D [p19]) and survival among women diagnosed with invasive breast cancer participating in the SEARCH (Studies of Epidemiology and Risk factors in Cancer Heredity) breast cancer study.

LitCoin-entities

Id Subject Object Predicate Lexical cue db_id
5168 111-116 GeneOrGeneProduct denotes CCND1 NCBIGene:595
5169 118-123 GeneOrGeneProduct denotes CCND2 NCBIGene:894
5170 125-130 GeneOrGeneProduct denotes CCND3 NCBIGene:896
5171 132-137 GeneOrGeneProduct denotes CCNE1 NCBIGene:898
5172 139-149 GeneOrGeneProduct denotes CDK2 [p33] NCBIGene:1017
5173 151-155 GeneOrGeneProduct denotes CDK4 NCBIGene:1019
5174 157-161 GeneOrGeneProduct denotes CDK6 NCBIGene:1021
5175 163-169 GeneOrGeneProduct denotes CDKN1A NCBIGene:1026
5176 171-174 GeneOrGeneProduct denotes p21 NCBIGene:1026
5177 176-180 GeneOrGeneProduct denotes Cip1 NCBIGene:1026
5178 183-189 GeneOrGeneProduct denotes CDKN1B NCBIGene:1027
5179 191-200 GeneOrGeneProduct denotes p27, Kip1 NCBIGene:1027
5180 203-209 GeneOrGeneProduct denotes CDKN2A NCBIGene:1029
5181 211-214 GeneOrGeneProduct denotes p16 NCBIGene:1029
5182 217-223 GeneOrGeneProduct denotes CDKN2B NCBIGene:1030
5183 225-228 GeneOrGeneProduct denotes p15 NCBIGene:1030
5184 231-237 GeneOrGeneProduct denotes CDKN2C NCBIGene:1031
5185 239-242 GeneOrGeneProduct denotes p18 NCBIGene:1031
5186 249-255 GeneOrGeneProduct denotes CDKN2D NCBIGene:1032
5187 257-260 GeneOrGeneProduct denotes p19 NCBIGene:1029
5188 282-287 OrganismTaxon denotes women NCBITaxon:9606
5189 303-325 DiseaseOrPhenotypicFeature denotes invasive breast cancer MESH:D001943
5190 416-429 DiseaseOrPhenotypicFeature denotes breast cancer MESH:D001943

LitCoin_Mondo

Id Subject Object Predicate Lexical cue mondo_id
T6 312-325 DiseaseOrPhenotypicFeature denotes breast cancer 0007254
T7 319-325 DiseaseOrPhenotypicFeature denotes cancer 0004992
T8 399-405 DiseaseOrPhenotypicFeature denotes Cancer 0004992
T9 416-429 DiseaseOrPhenotypicFeature denotes breast cancer 0007254
T10 423-429 DiseaseOrPhenotypicFeature denotes cancer 0004992

LitCoin-GeneOrGeneProduct-v0

Id Subject Object Predicate Lexical cue
T6 67-72 GeneOrGeneProduct denotes in 13
T7 91-109 GeneOrGeneProduct denotes cell cycle control
T8 111-116 GeneOrGeneProduct denotes CCND1
T9 118-123 GeneOrGeneProduct denotes CCND2
T10 125-130 GeneOrGeneProduct denotes CCND3
T11 132-137 GeneOrGeneProduct denotes CCNE1
T12 139-143 GeneOrGeneProduct denotes CDK2
T13 151-155 GeneOrGeneProduct denotes CDK4
T14 157-161 GeneOrGeneProduct denotes CDK6
T15 163-169 GeneOrGeneProduct denotes CDKN1A
T16 176-180 GeneOrGeneProduct denotes Cip1
T17 183-189 GeneOrGeneProduct denotes CDKN1B
T18 196-200 GeneOrGeneProduct denotes Kip1
T19 203-209 GeneOrGeneProduct denotes CDKN2A
T20 217-223 GeneOrGeneProduct denotes CDKN2B
T21 231-237 GeneOrGeneProduct denotes CDKN2C
T22 249-255 GeneOrGeneProduct denotes CDKN2D
T23 257-260 GeneOrGeneProduct denotes p19
T24 388-395 GeneOrGeneProduct denotes factors

LitCoin-GeneOrGeneProduct-v2

Id Subject Object Predicate Lexical cue
T4 91-109 GeneOrGeneProduct denotes cell cycle control
T5 111-116 GeneOrGeneProduct denotes CCND1
T6 118-123 GeneOrGeneProduct denotes CCND2
T7 125-130 GeneOrGeneProduct denotes CCND3
T8 132-137 GeneOrGeneProduct denotes CCNE1
T9 139-143 GeneOrGeneProduct denotes CDK2
T10 151-155 GeneOrGeneProduct denotes CDK4
T11 157-161 GeneOrGeneProduct denotes CDK6
T12 163-169 GeneOrGeneProduct denotes CDKN1A
T13 176-180 GeneOrGeneProduct denotes Cip1
T14 183-189 GeneOrGeneProduct denotes CDKN1B
T15 196-200 GeneOrGeneProduct denotes Kip1
T16 203-209 GeneOrGeneProduct denotes CDKN2A
T17 217-223 GeneOrGeneProduct denotes CDKN2B
T18 231-237 GeneOrGeneProduct denotes CDKN2C
T19 249-255 GeneOrGeneProduct denotes CDKN2D

LitCoin-Disease-MeSH

Id Subject Object Predicate Lexical cue originalLabel
T3 312-325 DiseaseOrPhenotypicFeature denotes breast cancer D001943
T4 399-405 DiseaseOrPhenotypicFeature denotes Cancer D009369
T5 416-429 DiseaseOrPhenotypicFeature denotes breast cancer D001943

PMID_GLOBAL

Id Subject Object Predicate Lexical cue mondo_id
T5 303-325 DiseaseOrPhenotypicFeature denotes invasive breast cancer 0006256
T6 416-429 DiseaseOrPhenotypicFeature denotes breast cancer 0004989|0007254

LitCoin-GeneOrGeneProduct-v3

Id Subject Object Predicate Lexical cue
T2 111-116 GeneOrGeneProduct denotes CCND1
T3 118-123 GeneOrGeneProduct denotes CCND2
T4 125-130 GeneOrGeneProduct denotes CCND3
T5 132-137 GeneOrGeneProduct denotes CCNE1
T6 139-143 GeneOrGeneProduct denotes CDK2
T7 151-155 GeneOrGeneProduct denotes CDK4
T8 157-161 GeneOrGeneProduct denotes CDK6
T9 163-169 GeneOrGeneProduct denotes CDKN1A
T10 176-180 GeneOrGeneProduct denotes Cip1
T11 183-189 GeneOrGeneProduct denotes CDKN1B
T12 196-200 GeneOrGeneProduct denotes Kip1
T13 203-209 GeneOrGeneProduct denotes CDKN2A
T14 217-223 GeneOrGeneProduct denotes CDKN2B
T15 231-237 GeneOrGeneProduct denotes CDKN2C
T16 249-255 GeneOrGeneProduct denotes CDKN2D

LitCoin_Mondo_095

Id Subject Object Predicate Lexical cue mondo_id
T5 303-325 DiseaseOrPhenotypicFeature denotes invasive breast cancer 0006256
T6 416-429 DiseaseOrPhenotypicFeature denotes breast cancer 0007254|0004989

LitCoin-MeSH-Disease-2

Id Subject Object Predicate Lexical cue ID:
T3 312-325 DiseaseOrPhenotypicFeature denotes breast cancer D001943
T4 399-405 DiseaseOrPhenotypicFeature denotes Cancer D009369
T5 416-429 DiseaseOrPhenotypicFeature denotes breast cancer D001943

LitCoin-MONDO_bioort2019

Id Subject Object Predicate Lexical cue #label
T3 312-325 DiseaseOrPhenotypicFeature denotes breast cancer D001943
T4 399-405 DiseaseOrPhenotypicFeature denotes Cancer D009369
T5 416-429 DiseaseOrPhenotypicFeature denotes breast cancer D001943

LitCoin-NCBITaxon-2

Id Subject Object Predicate Lexical cue
T1 282-287 OrganismTaxon denotes women

LitCoin-training-merged

Id Subject Object Predicate Lexical cue #label
T16 249-255 GeneOrGeneProduct denotes CDKN2D
T15 231-237 GeneOrGeneProduct denotes CDKN2C
T14 217-223 GeneOrGeneProduct denotes CDKN2B
T13 203-209 GeneOrGeneProduct denotes CDKN2A
T12 196-200 GeneOrGeneProduct denotes Kip1
T11 183-189 GeneOrGeneProduct denotes CDKN1B
T10 176-180 GeneOrGeneProduct denotes Cip1
T9 163-169 GeneOrGeneProduct denotes CDKN1A
T8 157-161 GeneOrGeneProduct denotes CDK6
T7 151-155 GeneOrGeneProduct denotes CDK4
T6 139-143 GeneOrGeneProduct denotes CDK2
T5 132-137 GeneOrGeneProduct denotes CCNE1
T4 125-130 GeneOrGeneProduct denotes CCND3
T3 118-123 GeneOrGeneProduct denotes CCND2
T2 111-116 GeneOrGeneProduct denotes CCND1
T88411 416-429 DiseaseOrPhenotypicFeature denotes breast cancer D001943
T67153 399-405 DiseaseOrPhenotypicFeature denotes Cancer D009369
T37765 312-325 DiseaseOrPhenotypicFeature denotes breast cancer D001943
T42870 282-287 OrganismTaxon denotes women