PubMed:1822243
Annnotations
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| TextSentencer_T1 | 0-57 | Sentence | denotes | Molecular modelling of protein-carbohydrate interactions. |
| TextSentencer_T2 | 58-123 | Sentence | denotes | Docking of monosaccharides in the binding site of concanavalin A. |
| TextSentencer_T3 | 124-233 | Sentence | denotes | A general procedure is described for addressing the computer simulation of protein-carbohydrate interactions. |
| TextSentencer_T4 | 234-473 | Sentence | denotes | First, a molecular mechanical force field capable of performing conformational analysis of oligosaccharides has been derived by the addition of new parameters to the Tripos force field; it is also compatible with the simulation of protein. |
| TextSentencer_T5 | 474-630 | Sentence | denotes | Second, a docking procedure which allows for a systematic exploration of the orientations and positions of a ligand into a protein cavity has been designed. |
| TextSentencer_T6 | 631-787 | Sentence | denotes | This so-called 'crankshaft' method uses rotations and variations about/of virtual bonds connecting, via dummy atoms, the ligand to the protein binding site. |
| TextSentencer_T7 | 788-874 | Sentence | denotes | Third, calculation of the relative stability of protein ligand complexes is performed. |
| TextSentencer_T8 | 875-1068 | Sentence | denotes | This strategy has been applied to search for all favourable interactions occurring between a lectin [concanavalin A (ConA)] and methyl alpha-D-mannopyranoside or methyl alpha-D-glucopyranoside. |
| TextSentencer_T9 | 1069-1183 | Sentence | denotes | For each monosaccharide, different stable orientations and positions within the binding site can be distinguished. |
| TextSentencer_T10 | 1184-1332 | Sentence | denotes | Among them, one corresponds to very favourable interactions, not only in terms of hydrogen bonding, but also in terms of van der Waals interactions. |
| TextSentencer_T11 | 1333-1510 | Sentence | denotes | It corresponds precisely to the binding mode of methyl alpha-D-mannopyranoside into ConA as revealed by the 2.9 A resolution of the crystalline complex (Derewenda et al., 1989). |
| TextSentencer_T12 | 1511-1688 | Sentence | denotes | Some implications of the present modelling study with respect to the molecular basis of the specificity of the interaction of lectins with various monosaccharides are presented. |
| T1 | 0-57 | Sentence | denotes | Molecular modelling of protein-carbohydrate interactions. |
| T2 | 58-123 | Sentence | denotes | Docking of monosaccharides in the binding site of concanavalin A. |
| T3 | 124-233 | Sentence | denotes | A general procedure is described for addressing the computer simulation of protein-carbohydrate interactions. |
| T4 | 234-473 | Sentence | denotes | First, a molecular mechanical force field capable of performing conformational analysis of oligosaccharides has been derived by the addition of new parameters to the Tripos force field; it is also compatible with the simulation of protein. |
| T5 | 474-630 | Sentence | denotes | Second, a docking procedure which allows for a systematic exploration of the orientations and positions of a ligand into a protein cavity has been designed. |
| T6 | 631-787 | Sentence | denotes | This so-called 'crankshaft' method uses rotations and variations about/of virtual bonds connecting, via dummy atoms, the ligand to the protein binding site. |
| T7 | 788-874 | Sentence | denotes | Third, calculation of the relative stability of protein ligand complexes is performed. |
| T8 | 875-1068 | Sentence | denotes | This strategy has been applied to search for all favourable interactions occurring between a lectin [concanavalin A (ConA)] and methyl alpha-D-mannopyranoside or methyl alpha-D-glucopyranoside. |
| T9 | 1069-1183 | Sentence | denotes | For each monosaccharide, different stable orientations and positions within the binding site can be distinguished. |
| T10 | 1184-1332 | Sentence | denotes | Among them, one corresponds to very favourable interactions, not only in terms of hydrogen bonding, but also in terms of van der Waals interactions. |
| T11 | 1333-1510 | Sentence | denotes | It corresponds precisely to the binding mode of methyl alpha-D-mannopyranoside into ConA as revealed by the 2.9 A resolution of the crystalline complex (Derewenda et al., 1989). |
| T12 | 1511-1688 | Sentence | denotes | Some implications of the present modelling study with respect to the molecular basis of the specificity of the interaction of lectins with various monosaccharides are presented. |
| T1 | 0-57 | Sentence | denotes | Molecular modelling of protein-carbohydrate interactions. |
| T2 | 58-123 | Sentence | denotes | Docking of monosaccharides in the binding site of concanavalin A. |
| T3 | 124-233 | Sentence | denotes | A general procedure is described for addressing the computer simulation of protein-carbohydrate interactions. |
| T4 | 234-473 | Sentence | denotes | First, a molecular mechanical force field capable of performing conformational analysis of oligosaccharides has been derived by the addition of new parameters to the Tripos force field; it is also compatible with the simulation of protein. |
| T5 | 474-630 | Sentence | denotes | Second, a docking procedure which allows for a systematic exploration of the orientations and positions of a ligand into a protein cavity has been designed. |
| T6 | 631-787 | Sentence | denotes | This so-called 'crankshaft' method uses rotations and variations about/of virtual bonds connecting, via dummy atoms, the ligand to the protein binding site. |
| T7 | 788-874 | Sentence | denotes | Third, calculation of the relative stability of protein ligand complexes is performed. |
| T8 | 875-1068 | Sentence | denotes | This strategy has been applied to search for all favourable interactions occurring between a lectin [concanavalin A (ConA)] and methyl alpha-D-mannopyranoside or methyl alpha-D-glucopyranoside. |
| T9 | 1069-1183 | Sentence | denotes | For each monosaccharide, different stable orientations and positions within the binding site can be distinguished. |
| T10 | 1184-1332 | Sentence | denotes | Among them, one corresponds to very favourable interactions, not only in terms of hydrogen bonding, but also in terms of van der Waals interactions. |
| T11 | 1333-1510 | Sentence | denotes | It corresponds precisely to the binding mode of methyl alpha-D-mannopyranoside into ConA as revealed by the 2.9 A resolution of the crystalline complex (Derewenda et al., 1989). |
| T12 | 1511-1688 | Sentence | denotes | Some implications of the present modelling study with respect to the molecular basis of the specificity of the interaction of lectins with various monosaccharides are presented. |
GlycoBiology-FMA
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| _T1 | 23-30 | FMAID:165447 | denotes | protein |
| _T2 | 23-30 | FMAID:67257 | denotes | protein |
| _T3 | 31-43 | FMAID:197276 | denotes | carbohydrate |
| _T4 | 31-43 | FMAID:82737 | denotes | carbohydrate |
| _T5 | 69-84 | FMAID:196730 | denotes | monosaccharides |
| _T6 | 69-84 | FMAID:82741 | denotes | monosaccharides |
| _T7 | 199-206 | FMAID:165447 | denotes | protein |
| _T8 | 199-206 | FMAID:67257 | denotes | protein |
| _T9 | 207-219 | FMAID:82737 | denotes | carbohydrate |
| _T10 | 207-219 | FMAID:197276 | denotes | carbohydrate |
| _T11 | 325-341 | FMAID:82742 | denotes | oligosaccharides |
| _T12 | 325-341 | FMAID:196731 | denotes | oligosaccharides |
| _T13 | 465-472 | FMAID:67257 | denotes | protein |
| _T14 | 465-472 | FMAID:165447 | denotes | protein |
| _T15 | 597-604 | FMAID:165447 | denotes | protein |
| _T16 | 597-604 | FMAID:67257 | denotes | protein |
| _T17 | 605-611 | FMAID:183397 | denotes | cavity |
| _T18 | 766-773 | FMAID:67257 | denotes | protein |
| _T19 | 766-773 | FMAID:165447 | denotes | protein |
| _T20 | 836-843 | FMAID:67257 | denotes | protein |
| _T21 | 836-843 | FMAID:165447 | denotes | protein |
| _T22 | 836-860 | FMAID:67906 | denotes | protein ligand complexes |
| _T23 | 836-860 | FMAID:165866 | denotes | protein ligand complexes |
| _T24 | 1078-1092 | FMAID:82741 | denotes | monosaccharide |
| _T25 | 1078-1092 | FMAID:196730 | denotes | monosaccharide |
| _T26 | 1465-1476 | FMAID:218981 | denotes | crystalline |
| _T27 | 1658-1673 | FMAID:196730 | denotes | monosaccharides |
| _T28 | 1658-1673 | FMAID:82741 | denotes | monosaccharides |
uniprot-human
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 766-786 | http://www.uniprot.org/uniprot/Q10586 | denotes | protein binding site |
GlycoBiology-NCBITAXON
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 253-263 | http://purl.bioontology.org/ontology/NCBITAXON/127244 | denotes | mechanical |
| T2 | 1257-1262 | http://purl.bioontology.org/ontology/NCBITAXON/62951 | denotes | terms |
| T3 | 1296-1301 | http://purl.bioontology.org/ontology/NCBITAXON/62951 | denotes | terms |
GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 823-843 | http://purl.obolibrary.org/obo/GO_0050821 | denotes | stability of protein |
| T2 | 1003-1009 | http://purl.obolibrary.org/obo/GO_0032259 | denotes | methyl |
| T3 | 1037-1043 | http://purl.obolibrary.org/obo/GO_0032259 | denotes | methyl |
| T4 | 1381-1387 | http://purl.obolibrary.org/obo/GO_0032259 | denotes | methyl |
| T5 | 1496-1498 | http://purl.obolibrary.org/obo/GO_0004306 | denotes | et |
GO-MF
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 69-99 | http://purl.obolibrary.org/obo/GO_0048029 | denotes | monosaccharides in the binding |
| T2 | 92-99 | http://purl.obolibrary.org/obo/GO_0070026 | denotes | binding |
| T3 | 774-781 | http://purl.obolibrary.org/obo/GO_0070026 | denotes | binding |
| T4 | 1149-1156 | http://purl.obolibrary.org/obo/GO_0070026 | denotes | binding |
| T5 | 1365-1372 | http://purl.obolibrary.org/obo/GO_0070026 | denotes | binding |
| T6 | 92-99 | http://purl.obolibrary.org/obo/GO_0003680 | denotes | binding |
| T7 | 774-781 | http://purl.obolibrary.org/obo/GO_0003680 | denotes | binding |
| T8 | 1149-1156 | http://purl.obolibrary.org/obo/GO_0003680 | denotes | binding |
| T9 | 1365-1372 | http://purl.obolibrary.org/obo/GO_0003680 | denotes | binding |
| T10 | 92-99 | http://purl.obolibrary.org/obo/GO_0017091 | denotes | binding |
| T11 | 774-781 | http://purl.obolibrary.org/obo/GO_0017091 | denotes | binding |
| T12 | 1149-1156 | http://purl.obolibrary.org/obo/GO_0017091 | denotes | binding |
| T13 | 1365-1372 | http://purl.obolibrary.org/obo/GO_0017091 | denotes | binding |
| T14 | 92-99 | http://purl.obolibrary.org/obo/GO_0005488 | denotes | binding |
| T15 | 774-781 | http://purl.obolibrary.org/obo/GO_0005488 | denotes | binding |
| T16 | 1149-1156 | http://purl.obolibrary.org/obo/GO_0005488 | denotes | binding |
| T17 | 1365-1372 | http://purl.obolibrary.org/obo/GO_0005488 | denotes | binding |
| T18 | 583-589 | http://purl.obolibrary.org/obo/GO_0005488 | denotes | ligand |
| T19 | 752-758 | http://purl.obolibrary.org/obo/GO_0005488 | denotes | ligand |
| T20 | 844-850 | http://purl.obolibrary.org/obo/GO_0005488 | denotes | ligand |
| T21 | 766-781 | http://purl.obolibrary.org/obo/GO_0005515 | denotes | protein binding |
EDAM-topics
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-19 | http://edamontology.org/topic_2275 | denotes | Molecular modelling |
| T2 | 23-30 | http://edamontology.org/topic_0078 | denotes | protein |
| T3 | 31-43 | http://edamontology.org/topic_0152 | denotes | carbohydrate |
| T4 | 44-56 | http://edamontology.org/topic_0602 | denotes | interactions |
| T5 | 199-206 | http://edamontology.org/topic_0078 | denotes | protein |
| T6 | 207-219 | http://edamontology.org/topic_0152 | denotes | carbohydrate |
| T7 | 220-232 | http://edamontology.org/topic_0602 | denotes | interactions |
| T8 | 465-472 | http://edamontology.org/topic_0078 | denotes | protein |
| T9 | 597-604 | http://edamontology.org/topic_0078 | denotes | protein |
| T10 | 766-773 | http://edamontology.org/topic_0078 | denotes | protein |
| T11 | 766-786 | http://edamontology.org/topic_3534 | denotes | protein binding site |
| T12 | 836-843 | http://edamontology.org/topic_0078 | denotes | protein |
| T13 | 935-947 | http://edamontology.org/topic_0602 | denotes | interactions |
| T14 | 1231-1243 | http://edamontology.org/topic_0602 | denotes | interactions |
| T15 | 1319-1331 | http://edamontology.org/topic_0602 | denotes | interactions |
| T16 | 1554-1559 | http://edamontology.org/topic_3678 | denotes | study |
| T17 | 1622-1633 | http://edamontology.org/topic_0602 | denotes | interaction |
EDAM-DFO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-19 | http://edamontology.org/operation_0322 | denotes | Molecular modelling |
| T2 | 23-30 | http://edamontology.org/data_1467 | denotes | protein |
| T3 | 23-30 | http://edamontology.org/format_1208 | denotes | protein |
| T4 | 69-84 | http://edamontology.org/data_2746 | denotes | monosaccharides |
| T5 | 126-133 | http://edamontology.org/operation_3429 | denotes | general |
| T6 | 199-206 | http://edamontology.org/format_1208 | denotes | protein |
| T7 | 199-206 | http://edamontology.org/data_1467 | denotes | protein |
| T8 | 313-321 | http://edamontology.org/operation_2945 | denotes | analysis |
| T9 | 382-392 | http://edamontology.org/data_2527 | denotes | parameters |
| T10 | 465-472 | http://edamontology.org/format_1208 | denotes | protein |
| T11 | 465-472 | http://edamontology.org/data_1467 | denotes | protein |
| T12 | 597-604 | http://edamontology.org/format_1208 | denotes | protein |
| T13 | 597-604 | http://edamontology.org/data_1467 | denotes | protein |
| T14 | 621-629 | http://edamontology.org/operation_2430 | denotes | designed |
| T15 | 766-773 | http://edamontology.org/data_1467 | denotes | protein |
| T16 | 766-773 | http://edamontology.org/format_1208 | denotes | protein |
| T17 | 766-786 | http://edamontology.org/operation_2575 | denotes | protein binding site |
| T18 | 795-806 | http://edamontology.org/operation_3438 | denotes | calculation |
| T19 | 836-843 | http://edamontology.org/format_1208 | denotes | protein |
| T20 | 836-843 | http://edamontology.org/data_1467 | denotes | protein |
| T21 | 836-850 | http://edamontology.org/operation_0482 | denotes | protein ligand |
| T22 | 836-860 | http://edamontology.org/data_2877 | denotes | protein ligand complexes |
| T23 | 836-860 | http://edamontology.org/data_1461 | denotes | protein ligand complexes |
| T24 | 909-915 | http://edamontology.org/operation_2421 | denotes | search |
| T25 | 1078-1092 | http://edamontology.org/data_2746 | denotes | monosaccharide |
| T26 | 1257-1262 | http://edamontology.org/data_0968 | denotes | terms |
| T27 | 1296-1301 | http://edamontology.org/data_0968 | denotes | terms |
| T28 | 1658-1673 | http://edamontology.org/data_2746 | denotes | monosaccharides |
| T29 | 1658-1677 | http://edamontology.org/data_2898 | denotes | monosaccharides are |
GlyTouCan-IUPAC
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| GlycanIUPAC_T1 | 920-923 | "http://rdf.glycoinfo.org/glycan/G41652MJ" | denotes | all |
| GlycanIUPAC_T2 | 920-923 | "http://rdf.glycoinfo.org/glycan/G20761YC" | denotes | all |
| GlycanIUPAC_T3 | 920-923 | "http://rdf.glycoinfo.org/glycan/G19807HM" | denotes | all |
| GlycanIUPAC_T4 | 920-923 | "http://rdf.glycoinfo.org/glycan/G20351TE" | denotes | all |
| GlycanIUPAC_T5 | 920-923 | "http://rdf.glycoinfo.org/glycan/G71957MR" | denotes | all |
| GlycanIUPAC_T6 | 920-923 | "http://rdf.glycoinfo.org/glycan/G59040AE" | denotes | all |
| GlycanIUPAC_T7 | 920-923 | "http://rdf.glycoinfo.org/glycan/G14987PW" | denotes | all |
| GlycanIUPAC_T8 | 920-923 | "http://rdf.glycoinfo.org/glycan/G95064PC" | denotes | all |
| GlycanIUPAC_T9 | 920-923 | "http://rdf.glycoinfo.org/glycan/G39143AQ" | denotes | all |
| GlycanIUPAC_T10 | 920-923 | "http://rdf.glycoinfo.org/glycan/G65149OO" | denotes | all |
| GlycanIUPAC_T11 | 920-923 | "http://rdf.glycoinfo.org/glycan/G02766SY" | denotes | all |
| GlycanIUPAC_T12 | 920-923 | "http://rdf.glycoinfo.org/glycan/G26019KJ" | denotes | all |
| GlycanIUPAC_T13 | 920-923 | "http://rdf.glycoinfo.org/glycan/G36429CZ" | denotes | all |
| GlycanIUPAC_T14 | 920-923 | "http://rdf.glycoinfo.org/glycan/G89633TP" | denotes | all |
| GlycanIUPAC_T15 | 920-923 | "http://rdf.glycoinfo.org/glycan/G28494FO" | denotes | all |
| GlycanIUPAC_T16 | 920-923 | "http://rdf.glycoinfo.org/glycan/G06219CP" | denotes | all |
| GlycanIUPAC_T17 | 920-923 | "http://rdf.glycoinfo.org/glycan/G44237SM" | denotes | all |
| GlycanIUPAC_T18 | 920-923 | "http://rdf.glycoinfo.org/glycan/G57948RL" | denotes | all |
| GlycanIUPAC_T19 | 920-923 | "http://rdf.glycoinfo.org/glycan/G64016DN" | denotes | all |
| GlycanIUPAC_T20 | 920-923 | "http://rdf.glycoinfo.org/glycan/G14536PC" | denotes | all |
| GlycanIUPAC_T21 | 920-923 | "http://rdf.glycoinfo.org/glycan/G14356FW" | denotes | all |
| GlycanIUPAC_T22 | 920-923 | "http://rdf.glycoinfo.org/glycan/G34565UO" | denotes | all |
| GlycanIUPAC_T23 | 920-923 | "http://rdf.glycoinfo.org/glycan/G67124MW" | denotes | all |
| GlycanIUPAC_T24 | 920-923 | "http://rdf.glycoinfo.org/glycan/G71457ZU" | denotes | all |
| GlycanIUPAC_T25 | 920-923 | "http://rdf.glycoinfo.org/glycan/G55228VZ" | denotes | all |
| GlycanIUPAC_T26 | 920-923 | "http://rdf.glycoinfo.org/glycan/G31034MJ" | denotes | all |
| GlycanIUPAC_T27 | 920-923 | "http://rdf.glycoinfo.org/glycan/G25776IP" | denotes | all |
| GlycanIUPAC_T28 | 920-923 | "http://rdf.glycoinfo.org/glycan/G64442BV" | denotes | all |
| GlycanIUPAC_T29 | 920-923 | "http://rdf.glycoinfo.org/glycan/G57018LE" | denotes | all |
| GlycanIUPAC_T30 | 920-923 | "http://rdf.glycoinfo.org/glycan/G61761GX" | denotes | all |
| GlycanIUPAC_T31 | 920-923 | "http://rdf.glycoinfo.org/glycan/G76318UX" | denotes | all |
| GlycanIUPAC_T32 | 920-923 | "http://rdf.glycoinfo.org/glycan/G61906ER" | denotes | all |
| GlycanIUPAC_T33 | 920-923 | "http://rdf.glycoinfo.org/glycan/G68723GR" | denotes | all |
| GlycanIUPAC_T34 | 920-923 | "http://rdf.glycoinfo.org/glycan/G19540LE" | denotes | all |
| GlycanIUPAC_T35 | 920-923 | "http://rdf.glycoinfo.org/glycan/G74944PO" | denotes | all |
| GlycanIUPAC_T36 | 920-923 | "http://rdf.glycoinfo.org/glycan/G89489ZJ" | denotes | all |
| GlycanIUPAC_T37 | 920-923 | "http://rdf.glycoinfo.org/glycan/G04434YU" | denotes | all |
| GlycanIUPAC_T38 | 920-923 | "http://rdf.glycoinfo.org/glycan/G21450PB" | denotes | all |
| GlycanIUPAC_T39 | 920-923 | "http://rdf.glycoinfo.org/glycan/G93629QY" | denotes | all |
| GlycanIUPAC_T40 | 920-923 | "http://rdf.glycoinfo.org/glycan/G02603TR" | denotes | all |
| GlycanIUPAC_T41 | 920-923 | "http://rdf.glycoinfo.org/glycan/G40280JP" | denotes | all |
| GlycanIUPAC_T42 | 920-923 | "http://rdf.glycoinfo.org/glycan/G95259IC" | denotes | all |
| GlycanIUPAC_T43 | 920-923 | "http://rdf.glycoinfo.org/glycan/G26900FE" | denotes | all |
| GlycanIUPAC_T44 | 920-923 | "http://rdf.glycoinfo.org/glycan/G21346KK" | denotes | all |
| GlycanIUPAC_T45 | 920-923 | "http://rdf.glycoinfo.org/glycan/G62509FF" | denotes | all |
| GlycanIUPAC_T46 | 920-923 | "http://rdf.glycoinfo.org/glycan/G83932AK" | denotes | all |
| GlycanIUPAC_T47 | 920-923 | "http://rdf.glycoinfo.org/glycan/G96978IB" | denotes | all |
| GlycanIUPAC_T48 | 920-923 | "http://rdf.glycoinfo.org/glycan/G34275DN" | denotes | all |
| GlycanIUPAC_T49 | 920-923 | "http://rdf.glycoinfo.org/glycan/G07071JF" | denotes | all |
| GlycanIUPAC_T50 | 920-923 | "http://rdf.glycoinfo.org/glycan/G80639QD" | denotes | all |
| GlycanIUPAC_T51 | 920-923 | "http://rdf.glycoinfo.org/glycan/G99460PJ" | denotes | all |
| GlycanIUPAC_T52 | 920-923 | "http://rdf.glycoinfo.org/glycan/G22024BZ" | denotes | all |
| GlycanIUPAC_T53 | 920-923 | "http://rdf.glycoinfo.org/glycan/G74097ZY" | denotes | all |
| GlycanIUPAC_T54 | 920-923 | "http://rdf.glycoinfo.org/glycan/G84439YP" | denotes | all |
| GlycanIUPAC_T55 | 920-923 | "http://rdf.glycoinfo.org/glycan/G52207WQ" | denotes | all |
| GlycanIUPAC_T56 | 920-923 | "http://rdf.glycoinfo.org/glycan/G90695MS" | denotes | all |
| GlycanIUPAC_T57 | 920-923 | "http://rdf.glycoinfo.org/glycan/G50398QX" | denotes | all |
| GlycanIUPAC_T58 | 920-923 | "http://rdf.glycoinfo.org/glycan/G12166ZT" | denotes | all |
| GlycanIUPAC_T59 | 920-923 | "http://rdf.glycoinfo.org/glycan/G48368BR" | denotes | all |
| GlycanIUPAC_T60 | 920-923 | "http://rdf.glycoinfo.org/glycan/G57407RW" | denotes | all |
| GlycanIUPAC_T61 | 920-923 | "http://rdf.glycoinfo.org/glycan/G00386TY" | denotes | all |
| GlycanIUPAC_T62 | 920-923 | "http://rdf.glycoinfo.org/glycan/G18723JK" | denotes | all |
| GlycanIUPAC_T63 | 920-923 | "http://rdf.glycoinfo.org/glycan/G93757OR" | denotes | all |
| GlycanIUPAC_T64 | 920-923 | "http://rdf.glycoinfo.org/glycan/G29006SI" | denotes | all |
| GlycanIUPAC_T65 | 920-923 | "http://rdf.glycoinfo.org/glycan/G03099OQ" | denotes | all |
| GlycanIUPAC_T66 | 920-923 | "http://rdf.glycoinfo.org/glycan/G53739OW" | denotes | all |
| GlycanIUPAC_T67 | 920-923 | "http://rdf.glycoinfo.org/glycan/G70440ZO" | denotes | all |
| GlycanIUPAC_T68 | 920-923 | "http://rdf.glycoinfo.org/glycan/G29951RR" | denotes | all |
| GlycanIUPAC_T69 | 920-923 | "http://rdf.glycoinfo.org/glycan/G58402TI" | denotes | all |
| GlycanIUPAC_T70 | 920-923 | "http://rdf.glycoinfo.org/glycan/G39875TP" | denotes | all |
| GlycanIUPAC_T71 | 920-923 | "http://rdf.glycoinfo.org/glycan/G83439QV" | denotes | all |
| GlycanIUPAC_T72 | 920-923 | "http://rdf.glycoinfo.org/glycan/G41762RC" | denotes | all |
| GlycanIUPAC_T73 | 920-923 | "http://rdf.glycoinfo.org/glycan/G91604UI" | denotes | all |
| GlycanIUPAC_T74 | 920-923 | "http://rdf.glycoinfo.org/glycan/G88447WE" | denotes | all |
| GlycanIUPAC_T75 | 920-923 | "http://rdf.glycoinfo.org/glycan/G93634BS" | denotes | all |
| GlycanIUPAC_T76 | 920-923 | "http://rdf.glycoinfo.org/glycan/G02587BH" | denotes | all |
| GlycanIUPAC_T77 | 920-923 | "http://rdf.glycoinfo.org/glycan/G43511MX" | denotes | all |
| GlycanIUPAC_T78 | 920-923 | "http://rdf.glycoinfo.org/glycan/G64958DH" | denotes | all |
| GlycanIUPAC_T79 | 920-923 | "http://rdf.glycoinfo.org/glycan/G30384TR" | denotes | all |
| GlycanIUPAC_T80 | 920-923 | "http://rdf.glycoinfo.org/glycan/G15624EX" | denotes | all |
| GlycanIUPAC_T81 | 920-923 | "http://rdf.glycoinfo.org/glycan/G22706ST" | denotes | all |
| GlycanIUPAC_T82 | 920-923 | "http://rdf.glycoinfo.org/glycan/G57408PI" | denotes | all |
| GlycanIUPAC_T83 | 920-923 | "http://rdf.glycoinfo.org/glycan/G86403XX" | denotes | all |
| GlycanIUPAC_T84 | 920-923 | "http://rdf.glycoinfo.org/glycan/G78043YB" | denotes | all |
| GlycanIUPAC_T85 | 920-923 | "http://rdf.glycoinfo.org/glycan/G18952JK" | denotes | all |
| GlycanIUPAC_T86 | 920-923 | "http://rdf.glycoinfo.org/glycan/G49020ND" | denotes | all |
| GlycanIUPAC_T87 | 920-923 | "http://rdf.glycoinfo.org/glycan/G63590YW" | denotes | all |
| GlycanIUPAC_T88 | 920-923 | "http://rdf.glycoinfo.org/glycan/G22793KS" | denotes | all |
| GlycanIUPAC_T89 | 920-923 | "http://rdf.glycoinfo.org/glycan/G64134SS" | denotes | all |
| GlycanIUPAC_T90 | 920-923 | "http://rdf.glycoinfo.org/glycan/G17338HY" | denotes | all |
| GlycanIUPAC_T91 | 920-923 | "http://rdf.glycoinfo.org/glycan/G99745XF" | denotes | all |
| GlycanIUPAC_T92 | 920-923 | "http://rdf.glycoinfo.org/glycan/G27782HN" | denotes | all |
| GlycanIUPAC_T93 | 920-923 | "http://rdf.glycoinfo.org/glycan/G57496DC" | denotes | all |
| GlycanIUPAC_T94 | 920-923 | "http://rdf.glycoinfo.org/glycan/G93169WB" | denotes | all |
| GlycanIUPAC_T95 | 920-923 | "http://rdf.glycoinfo.org/glycan/G05518TD" | denotes | all |
| GlycanIUPAC_T96 | 920-923 | "http://rdf.glycoinfo.org/glycan/G62603DN" | denotes | all |
| GlycanIUPAC_T97 | 920-923 | "http://rdf.glycoinfo.org/glycan/G59574FS" | denotes | all |
| GlycanIUPAC_T98 | 920-923 | "http://rdf.glycoinfo.org/glycan/G47567WC" | denotes | all |
Lectin
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| Lectin_T1 | 1499-1501 | https://acgg.asia/db/lfdb/LfDB0344 | denotes | al |
| Lectin_T2 | 992-996 | https://acgg.asia/db/lfdb/LfDB0170 | denotes | ConA |
| Lectin_T3 | 1417-1421 | https://acgg.asia/db/lfdb/LfDB0170 | denotes | ConA |
Lectin-Jamboree
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 968-974 | lectin | denotes | lectin |
| T2 | 1637-1644 | lectin | denotes | lectins |
Lectin-Jamboree-small
| Id | Subject | Object | Predicate | Lexical cue | glycosmos_id |
|---|---|---|---|---|---|
| T1 | 992-996 | Lectin | denotes | ConA | GL_002303 |
| T2 | 1417-1421 | Lectin | denotes | ConA | GL_002303 |
Lectin-Jamboree-Sentence
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-57 | Sentence | denotes | Molecular modelling of protein-carbohydrate interactions. |
| T2 | 58-123 | Sentence | denotes | Docking of monosaccharides in the binding site of concanavalin A. |
| T3 | 124-233 | Sentence | denotes | A general procedure is described for addressing the computer simulation of protein-carbohydrate interactions. |
| T4 | 234-473 | Sentence | denotes | First, a molecular mechanical force field capable of performing conformational analysis of oligosaccharides has been derived by the addition of new parameters to the Tripos force field; it is also compatible with the simulation of protein. |
| T5 | 474-630 | Sentence | denotes | Second, a docking procedure which allows for a systematic exploration of the orientations and positions of a ligand into a protein cavity has been designed. |
| T6 | 631-787 | Sentence | denotes | This so-called 'crankshaft' method uses rotations and variations about/of virtual bonds connecting, via dummy atoms, the ligand to the protein binding site. |
| T7 | 788-874 | Sentence | denotes | Third, calculation of the relative stability of protein ligand complexes is performed. |
| T8 | 875-1068 | Sentence | denotes | This strategy has been applied to search for all favourable interactions occurring between a lectin [concanavalin A (ConA)] and methyl alpha-D-mannopyranoside or methyl alpha-D-glucopyranoside. |
| T9 | 1069-1183 | Sentence | denotes | For each monosaccharide, different stable orientations and positions within the binding site can be distinguished. |
| T10 | 1184-1332 | Sentence | denotes | Among them, one corresponds to very favourable interactions, not only in terms of hydrogen bonding, but also in terms of van der Waals interactions. |
| T11 | 1333-1510 | Sentence | denotes | It corresponds precisely to the binding mode of methyl alpha-D-mannopyranoside into ConA as revealed by the 2.9 A resolution of the crystalline complex (Derewenda et al., 1989). |
| T12 | 1511-1688 | Sentence | denotes | Some implications of the present modelling study with respect to the molecular basis of the specificity of the interaction of lectins with various monosaccharides are presented. |
NCBITAXON
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| T1 | 400-406 | OrganismTaxon | denotes | Tripos | 2126447 |
Anatomy-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 605-611 | Body_part | denotes | cavity | http://purl.obolibrary.org/obo/UBERON_0002553 |