PubMed:17962394 JSONTXT

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{"target":"https://pubannotation.org/docs/sourcedb/PubMed/sourceid/17962394","sourcedb":"PubMed","sourceid":"17962394","source_url":"http://www.ncbi.nlm.nih.gov/pubmed/17962394","text":"Skewed X inactivation in an X linked nystagmus family resulted from a novel, p.R229G, missense mutation in the FRMD7 gene.\nAIMS: This study aimed to identify the underlying genetic defect of a large Turkish X linked nystagmus (NYS) family.\nMETHODS: Both Xp11 and Xq26 loci were tested by linkage analysis. The 12 exons and intron-exon junctions of the FRMD7 gene were screened by direct sequencing. X chromosome inactivation analysis was performed by enzymatic predigestion of DNA with a methylation-sensitive enzyme, followed by PCR of the polymorphic CAG repeat of the androgen receptor gene.\nRESULTS: The family contained 162 individuals, among whom 28 had NYS. Linkage analysis confirmed the Xq26 locus. A novel missense c.686C\u003eG mutation, which causes the substitution of a conserved arginine at amino acid position 229 by glycine (p.R229G) in exon 8 of the FRMD7 gene, was observed. This change was not documented in 120 control individuals. The clinical findings in a female who was homozygous for the mutation were not different from those of affected heterozygous females. Skewed X inactivation was remarkable in the affected females of the family.\nCONCLUSIONS: A novel p.R229G mutation in the FRMD7 gene causes the NYS phenotype, and skewed X inactivation influences the manifestation of the disease in X linked NYS females.","tracks":[{"project":"TEST-DiseaseOrPhenotypicFeature","denotations":[{"id":"T1","span":{"begin":173,"end":187},"obj":"DiseaseOrPhenotypicFeature"}],"attributes":[{"id":"A1","pred":"#label","subj":"T1","obj":"DISEASE"},{"subj":"T1","pred":"source","obj":"TEST-DiseaseOrPhenotypicFeature"}]},{"project":"TEST-ChemicalEntity","denotations":[{"id":"T1","span":{"begin":571,"end":579},"obj":"ChemicalEntity"},{"id":"T2","span":{"begin":789,"end":797},"obj":"ChemicalEntity"},{"id":"T5","span":{"begin":828,"end":835},"obj":"ChemicalEntity"}],"attributes":[{"id":"A1","pred":"ID:","subj":"T1","obj":"ChemicalEntity"},{"id":"A2","pred":"ID:","subj":"T2","obj":"http://purl.obolibrary.org/obo/CHEBI_32696"},{"id":"A3","pred":"ID:","subj":"T2","obj":"http://purl.obolibrary.org/obo/CHEBI_29016"},{"id":"A4","pred":"ID:","subj":"T2","obj":"http://purl.obolibrary.org/obo/CHEBI_16467"},{"id":"A5","pred":"ID:","subj":"T5","obj":"http://purl.obolibrary.org/obo/CHEBI_57305"},{"id":"A6","pred":"ID:","subj":"T5","obj":"http://purl.obolibrary.org/obo/CHEBI_29947"},{"id":"A7","pred":"ID:","subj":"T5","obj":"http://purl.obolibrary.org/obo/CHEBI_15428"},{"subj":"T1","pred":"source","obj":"TEST-ChemicalEntity"},{"subj":"T2","pred":"source","obj":"TEST-ChemicalEntity"},{"subj":"T5","pred":"source","obj":"TEST-ChemicalEntity"}]},{"project":"Test-SequenceVariant","denotations":[{"id":"T1","span":{"begin":77,"end":84},"obj":"SequenceVariant"},{"id":"T2","span":{"begin":725,"end":733},"obj":"SequenceVariant"},{"id":"T3","span":{"begin":837,"end":844},"obj":"SequenceVariant"},{"id":"T4","span":{"begin":1179,"end":1186},"obj":"SequenceVariant"}],"attributes":[{"subj":"T1","pred":"source","obj":"Test-SequenceVariant"},{"subj":"T2","pred":"source","obj":"Test-SequenceVariant"},{"subj":"T3","pred":"source","obj":"Test-SequenceVariant"},{"subj":"T4","pred":"source","obj":"Test-SequenceVariant"}]},{"project":"Test-GeneOrGeneProduct","denotations":[{"id":"T1","span":{"begin":111,"end":116},"obj":"GeneOrGeneProduct"},{"id":"T2","span":{"begin":254,"end":258},"obj":"GeneOrGeneProduct"},{"id":"T3","span":{"begin":352,"end":357},"obj":"GeneOrGeneProduct"},{"id":"T4","span":{"begin":399,"end":411},"obj":"GeneOrGeneProduct"},{"id":"T5","span":{"begin":571,"end":588},"obj":"GeneOrGeneProduct"},{"id":"T6","span":{"begin":863,"end":868},"obj":"GeneOrGeneProduct"},{"id":"T7","span":{"begin":1203,"end":1208},"obj":"GeneOrGeneProduct"}],"attributes":[{"subj":"T1","pred":"source","obj":"Test-GeneOrGeneProduct"},{"subj":"T2","pred":"source","obj":"Test-GeneOrGeneProduct"},{"subj":"T3","pred":"source","obj":"Test-GeneOrGeneProduct"},{"subj":"T4","pred":"source","obj":"Test-GeneOrGeneProduct"},{"subj":"T5","pred":"source","obj":"Test-GeneOrGeneProduct"},{"subj":"T6","pred":"source","obj":"Test-GeneOrGeneProduct"},{"subj":"T7","pred":"source","obj":"Test-GeneOrGeneProduct"}]},{"project":"Test-merged","denotations":[{"id":"T1","span":{"begin":173,"end":187},"obj":"DiseaseOrPhenotypicFeature"},{"id":"T7","span":{"begin":1203,"end":1208},"obj":"GeneOrGeneProduct"},{"id":"T6","span":{"begin":863,"end":868},"obj":"GeneOrGeneProduct"},{"id":"T5","span":{"begin":571,"end":588},"obj":"GeneOrGeneProduct"},{"id":"T4","span":{"begin":399,"end":411},"obj":"GeneOrGeneProduct"},{"id":"T3","span":{"begin":352,"end":357},"obj":"GeneOrGeneProduct"},{"id":"T2","span":{"begin":254,"end":258},"obj":"GeneOrGeneProduct"},{"id":"T5223","span":{"begin":111,"end":116},"obj":"GeneOrGeneProduct"},{"id":"T22164","span":{"begin":828,"end":835},"obj":"ChemicalEntity"},{"id":"T47011","span":{"begin":789,"end":797},"obj":"ChemicalEntity"},{"id":"T5327","span":{"begin":1179,"end":1186},"obj":"SequenceVariant"},{"id":"T86947","span":{"begin":837,"end":844},"obj":"SequenceVariant"},{"id":"T61695","span":{"begin":725,"end":733},"obj":"SequenceVariant"},{"id":"T26469","span":{"begin":77,"end":84},"obj":"SequenceVariant"}],"attributes":[{"id":"A4","pred":"ID:","subj":"T47011","obj":"http://purl.obolibrary.org/obo/CHEBI_16467"},{"id":"A3","pred":"ID:","subj":"T47011","obj":"http://purl.obolibrary.org/obo/CHEBI_29016"},{"id":"A2","pred":"ID:","subj":"T47011","obj":"http://purl.obolibrary.org/obo/CHEBI_32696"},{"id":"A7","pred":"ID:","subj":"T22164","obj":"http://purl.obolibrary.org/obo/CHEBI_15428"},{"id":"A6","pred":"ID:","subj":"T22164","obj":"http://purl.obolibrary.org/obo/CHEBI_29947"},{"id":"A5","pred":"ID:","subj":"T22164","obj":"http://purl.obolibrary.org/obo/CHEBI_57305"},{"id":"A1","pred":"#label","subj":"T1","obj":"DISEASE"},{"subj":"T1","pred":"source","obj":"Test-merged"},{"subj":"T7","pred":"source","obj":"Test-merged"},{"subj":"T6","pred":"source","obj":"Test-merged"},{"subj":"T5","pred":"source","obj":"Test-merged"},{"subj":"T4","pred":"source","obj":"Test-merged"},{"subj":"T3","pred":"source","obj":"Test-merged"},{"subj":"T2","pred":"source","obj":"Test-merged"},{"subj":"T5223","pred":"source","obj":"Test-merged"},{"subj":"T22164","pred":"source","obj":"Test-merged"},{"subj":"T47011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