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LitCoin-sentences

Id Subject Object Predicate Lexical cue
T1 0-75 Sentence denotes Manganese superoxide dismutase (Mn-SOD) gene polymorphisms in urolithiasis.
T2 76-210 Sentence denotes Polymorphism in manganese superoxide dismutase gene (Mn-SOD) is a new approach to identify its probable association with urolithiasis.
T3 211-302 Sentence denotes Oxidative stress may be involved in the development of stone formation in the renal system.
T4 303-399 Sentence denotes MnSOD is one of the primary enzymes that directly scavenges potential harmful oxidizing species.
T5 400-590 Sentence denotes A valine (Val) to alanine (Ala) substitution at amino acid 16, occurring in the mitochondrial targeting sequence of the MnSOD gene, has been associated with an increase in urolithiasis risk.
T6 591-704 Sentence denotes This study was conducted to investigate the association of MnSOD gene polymorphism with the risk of urolithiasis.
T7 705-784 Sentence denotes We investigated the MnSOD in 66 stone-forming adults and 72 healthy volunteers.
T8 785-876 Sentence denotes DNA was isolated from peripheral blood and genotyping was performed with PCR-based methods.
T9 877-913 Sentence denotes Then PCR products were cut by BsaW1.
T10 914-1030 Sentence denotes Products were run on 3% agarose gel, 246 bp regions were 1-Ala-9, 164 and 82 bp products were determined as 2 Val-9.
T11 1031-1101 Sentence denotes Chi-square test was used for comparison between patients and controls.
T12 1102-1211 Sentence denotes In the control group the homozygote Ala allele was significantly higher than in the patient group (P < 0.01).
T13 1212-1350 Sentence denotes The distribution of Ala/Val and homozygote Val alleles in the patient group was significantly higher than in the control group (P < 0.05).
T14 1351-1455 Sentence denotes MnSOD genotype determination may provide a tool to identify individuals who are at risk of urolithiasis.
T15 1456-1536 Sentence denotes This experiment also provides data about antioxidant status and stone formation.

LitCoin-entities-OrganismTaxon-PD

Id Subject Object Predicate Lexical cue db_id
T1 353-362 OrganismTaxon denotes scavenges NCBItxid:30848

LitCoin-entities

Id Subject Object Predicate Lexical cue db_id
4234 0-30 GeneOrGeneProduct denotes Manganese superoxide dismutase NCBIGene:6648
4235 32-38 GeneOrGeneProduct denotes Mn-SOD NCBIGene:6648
4236 62-74 DiseaseOrPhenotypicFeature denotes urolithiasis MESH:D052878
4237 92-122 GeneOrGeneProduct denotes manganese superoxide dismutase NCBIGene:6648
4238 129-135 GeneOrGeneProduct denotes Mn-SOD NCBIGene:6648
4239 197-209 DiseaseOrPhenotypicFeature denotes urolithiasis MESH:D052878
4240 266-281 DiseaseOrPhenotypicFeature denotes stone formation MESH:D002137
4241 303-308 GeneOrGeneProduct denotes MnSOD NCBIGene:6648
4242 402-461 SequenceVariant denotes valine (Val) to alanine (Ala) substitution at amino acid 16 p|SUB|V|16|A
4243 520-525 GeneOrGeneProduct denotes MnSOD NCBIGene:6648
4244 572-584 DiseaseOrPhenotypicFeature denotes urolithiasis MESH:D052878
4245 650-655 GeneOrGeneProduct denotes MnSOD NCBIGene:6648
4246 691-703 DiseaseOrPhenotypicFeature denotes urolithiasis MESH:D052878
4247 725-730 GeneOrGeneProduct denotes MnSOD NCBIGene:6648
4248 737-750 DiseaseOrPhenotypicFeature denotes stone-forming MESH:D002137
4249 938-945 ChemicalEntity denotes agarose MESH:D012685
4250 1079-1087 OrganismTaxon denotes patients NCBITaxon:9606
4251 1186-1193 OrganismTaxon denotes patient NCBITaxon:9606
4252 1274-1281 OrganismTaxon denotes patient NCBITaxon:9606
4253 1351-1356 GeneOrGeneProduct denotes MnSOD NCBIGene:6648
4254 1442-1454 DiseaseOrPhenotypicFeature denotes urolithiasis MESH:D052878
4255 1520-1535 DiseaseOrPhenotypicFeature denotes stone formation MESH:D002137

LitCoin_Mondo

Id Subject Object Predicate Lexical cue mondo_id
T1 62-74 DiseaseOrPhenotypicFeature denotes urolithiasis 0024647
T2 197-209 DiseaseOrPhenotypicFeature denotes urolithiasis 0024647
T3 572-584 DiseaseOrPhenotypicFeature denotes urolithiasis 0024647
T4 691-703 DiseaseOrPhenotypicFeature denotes urolithiasis 0024647
T5 1442-1454 DiseaseOrPhenotypicFeature denotes urolithiasis 0024647

LitCoin-GeneOrGeneProduct-v0

Id Subject Object Predicate Lexical cue
T1 0-30 GeneOrGeneProduct denotes Manganese superoxide dismutase
T2 32-38 GeneOrGeneProduct denotes Mn-SOD
T3 92-122 GeneOrGeneProduct denotes manganese superoxide dismutase
T4 129-135 GeneOrGeneProduct denotes Mn-SOD
T5 171-179 GeneOrGeneProduct denotes probable
T6 266-271 GeneOrGeneProduct denotes stone
T7 272-281 GeneOrGeneProduct denotes formation
T8 303-308 GeneOrGeneProduct denotes MnSOD
T9 331-338 GeneOrGeneProduct denotes enzymes
T10 418-425 GeneOrGeneProduct denotes alanine
T11 427-430 GeneOrGeneProduct denotes Ala
T12 448-458 GeneOrGeneProduct denotes amino acid
T13 480-493 GeneOrGeneProduct denotes mitochondrial
T14 520-525 GeneOrGeneProduct denotes MnSOD
T15 650-655 GeneOrGeneProduct denotes MnSOD
T16 725-730 GeneOrGeneProduct denotes MnSOD
T17 737-742 GeneOrGeneProduct denotes stone
T18 862-867 GeneOrGeneProduct denotes based
T19 868-875 GeneOrGeneProduct denotes methods
T20 886-894 GeneOrGeneProduct denotes products
T21 900-903 GeneOrGeneProduct denotes cut
T22 914-922 GeneOrGeneProduct denotes Products
T23 946-949 GeneOrGeneProduct denotes gel
T24 973-978 GeneOrGeneProduct denotes Ala-9
T25 973-976 GeneOrGeneProduct denotes Ala
T26 994-1002 GeneOrGeneProduct denotes products
T27 1008-1018 GeneOrGeneProduct denotes determined
T28 1035-1041 GeneOrGeneProduct denotes square
T29 1042-1046 GeneOrGeneProduct denotes test
T30 1138-1141 GeneOrGeneProduct denotes Ala
T31 1232-1235 GeneOrGeneProduct denotes Ala
T32 1351-1356 GeneOrGeneProduct denotes MnSOD
T33 1366-1379 GeneOrGeneProduct denotes determination
T34 1520-1525 GeneOrGeneProduct denotes stone
T35 1526-1535 GeneOrGeneProduct denotes formation

LitCoin-GeneOrGeneProduct-v2

Id Subject Object Predicate Lexical cue
T1 0-30 GeneOrGeneProduct denotes Manganese superoxide dismutase
T2 32-38 GeneOrGeneProduct denotes Mn-SOD
T3 92-122 GeneOrGeneProduct denotes manganese superoxide dismutase
T4 129-135 GeneOrGeneProduct denotes Mn-SOD
T5 171-179 GeneOrGeneProduct denotes probable
T6 303-308 GeneOrGeneProduct denotes MnSOD
T7 418-425 GeneOrGeneProduct denotes alanine
T8 427-430 GeneOrGeneProduct denotes Ala
T9 448-458 GeneOrGeneProduct denotes amino acid
T10 480-493 GeneOrGeneProduct denotes mitochondrial
T11 520-525 GeneOrGeneProduct denotes MnSOD
T12 650-655 GeneOrGeneProduct denotes MnSOD
T13 725-730 GeneOrGeneProduct denotes MnSOD
T14 973-976 GeneOrGeneProduct denotes Ala
T15 1035-1041 GeneOrGeneProduct denotes square
T16 1138-1141 GeneOrGeneProduct denotes Ala
T17 1232-1235 GeneOrGeneProduct denotes Ala
T18 1351-1356 GeneOrGeneProduct denotes MnSOD

LitCoin-Disease-MeSH

Id Subject Object Predicate Lexical cue originalLabel
T1 62-74 DiseaseOrPhenotypicFeature denotes urolithiasis D052878
T2 197-209 DiseaseOrPhenotypicFeature denotes urolithiasis D052878
T3 572-584 DiseaseOrPhenotypicFeature denotes urolithiasis D052878
T4 691-703 DiseaseOrPhenotypicFeature denotes urolithiasis D052878
T5 1442-1454 DiseaseOrPhenotypicFeature denotes urolithiasis D052878

LitCoin-GeneOrGeneProduct-v3

Id Subject Object Predicate Lexical cue
T1 0-30 GeneOrGeneProduct denotes Manganese superoxide dismutase
T2 32-38 GeneOrGeneProduct denotes Mn-SOD
T3 92-122 GeneOrGeneProduct denotes manganese superoxide dismutase
T4 129-135 GeneOrGeneProduct denotes Mn-SOD
T5 171-179 GeneOrGeneProduct denotes probable
T6 303-308 GeneOrGeneProduct denotes MnSOD
T7 520-525 GeneOrGeneProduct denotes MnSOD
T8 650-655 GeneOrGeneProduct denotes MnSOD
T9 725-730 GeneOrGeneProduct denotes MnSOD
T10 1351-1356 GeneOrGeneProduct denotes MnSOD

LitCoin_Mondo_095

Id Subject Object Predicate Lexical cue mondo_id
T1 35-38 DiseaseOrPhenotypicFeature denotes SOD 0019029|0008428
T3 62-74 DiseaseOrPhenotypicFeature denotes urolithiasis 0024647
T4 132-135 DiseaseOrPhenotypicFeature denotes SOD 0019029|0008428
T6 197-209 DiseaseOrPhenotypicFeature denotes urolithiasis 0024647
T7 572-584 DiseaseOrPhenotypicFeature denotes urolithiasis 0024647
T8 691-703 DiseaseOrPhenotypicFeature denotes urolithiasis 0024647
T9 1442-1454 DiseaseOrPhenotypicFeature denotes urolithiasis 0024647

LitCoin-MeSH-Disease-2

Id Subject Object Predicate Lexical cue ID:
T1 62-74 DiseaseOrPhenotypicFeature denotes urolithiasis D052878
T2 197-209 DiseaseOrPhenotypicFeature denotes urolithiasis D052878
T3 266-281 DiseaseOrPhenotypicFeature denotes stone formation DISEASE
T4 572-584 DiseaseOrPhenotypicFeature denotes urolithiasis D052878
T5 691-703 DiseaseOrPhenotypicFeature denotes urolithiasis D052878
T6 737-750 DiseaseOrPhenotypicFeature denotes stone-forming DISEASE
T7 1442-1454 DiseaseOrPhenotypicFeature denotes urolithiasis D052878
T8 1520-1535 DiseaseOrPhenotypicFeature denotes stone formation DISEASE

LitCoin-MONDO_bioort2019

Id Subject Object Predicate Lexical cue #label
T1 62-74 DiseaseOrPhenotypicFeature denotes urolithiasis D052878
T2 197-209 DiseaseOrPhenotypicFeature denotes urolithiasis D052878
T3 266-281 DiseaseOrPhenotypicFeature denotes stone formation DISEASE
T4 572-584 DiseaseOrPhenotypicFeature denotes urolithiasis D052878
T5 691-703 DiseaseOrPhenotypicFeature denotes urolithiasis D052878
T6 737-750 DiseaseOrPhenotypicFeature denotes stone-forming DISEASE
T7 1442-1454 DiseaseOrPhenotypicFeature denotes urolithiasis D052878
T8 1520-1535 DiseaseOrPhenotypicFeature denotes stone formation DISEASE

LitCoin-Chemical-MeSH-CHEBI

Id Subject Object Predicate Lexical cue ID:
T1 10-30 ChemicalEntity denotes superoxide dismutase D013482
T2 32-38 ChemicalEntity denotes Mn-SOD D013482
T3 92-122 ChemicalEntity denotes manganese superoxide dismutase D013482
T4 129-135 ChemicalEntity denotes Mn-SOD D013482
T5 402-408 ChemicalEntity denotes valine http://purl.obolibrary.org/obo/CHEBI_27266
T6 410-413 ChemicalEntity denotes Val http://purl.obolibrary.org/obo/CHEBI_30015|http://purl.obolibrary.org/obo/CHEBI_16414|http://purl.obolibrary.org/obo/CHEBI_27266
T9 418-425 ChemicalEntity denotes alanine http://purl.obolibrary.org/obo/CHEBI_16449
T10 427-430 ChemicalEntity denotes Ala http://purl.obolibrary.org/obo/CHEBI_46217|http://purl.obolibrary.org/obo/CHEBI_16977|http://purl.obolibrary.org/obo/CHEBI_16449
T13 938-945 ChemicalEntity denotes agarose D012685|http://purl.obolibrary.org/obo/CHEBI_2511
T15 973-976 ChemicalEntity denotes Ala http://purl.obolibrary.org/obo/CHEBI_46217|http://purl.obolibrary.org/obo/CHEBI_16977|http://purl.obolibrary.org/obo/CHEBI_16449
T18 1024-1027 ChemicalEntity denotes Val http://purl.obolibrary.org/obo/CHEBI_30015|http://purl.obolibrary.org/obo/CHEBI_16414|http://purl.obolibrary.org/obo/CHEBI_27266
T21 1138-1141 ChemicalEntity denotes Ala http://purl.obolibrary.org/obo/CHEBI_46217|http://purl.obolibrary.org/obo/CHEBI_16977|http://purl.obolibrary.org/obo/CHEBI_16449
T24 1232-1239 ChemicalEntity denotes Ala/Val http://purl.obolibrary.org/obo/CHEBI_73809
T25 1232-1235 ChemicalEntity denotes Ala http://purl.obolibrary.org/obo/CHEBI_16449
T26 1236-1239 ChemicalEntity denotes Val http://purl.obolibrary.org/obo/CHEBI_27266
T27 1255-1258 ChemicalEntity denotes Val http://purl.obolibrary.org/obo/CHEBI_30015|http://purl.obolibrary.org/obo/CHEBI_16414|http://purl.obolibrary.org/obo/CHEBI_27266
T30 1497-1508 ChemicalEntity denotes antioxidant ChemicalEntity

LitCoin-NCBITaxon-2

Id Subject Object Predicate Lexical cue
T1 353-362 OrganismTaxon denotes scavenges
T2 427-430 OrganismTaxon denotes Ala
T3 973-976 OrganismTaxon denotes Ala
T4 1079-1087 OrganismTaxon denotes patients
T5 1138-1141 OrganismTaxon denotes Ala
T6 1186-1193 OrganismTaxon denotes patient
T7 1232-1235 OrganismTaxon denotes Ala
T8 1274-1281 OrganismTaxon denotes patient

LitCoin-training-merged

Id Subject Object Predicate Lexical cue #label ID:
T30 1497-1508 ChemicalEntity denotes antioxidant ChemicalEntity
T27 1255-1258 ChemicalEntity denotes Val http://purl.obolibrary.org/obo/CHEBI_27266|http://purl.obolibrary.org/obo/CHEBI_16414|http://purl.obolibrary.org/obo/CHEBI_30015
T26 1236-1239 ChemicalEntity denotes Val http://purl.obolibrary.org/obo/CHEBI_27266
T25 1232-1235 ChemicalEntity denotes Ala http://purl.obolibrary.org/obo/CHEBI_16449
T24 1232-1239 ChemicalEntity denotes Ala/Val http://purl.obolibrary.org/obo/CHEBI_73809
T21 1138-1141 ChemicalEntity denotes Ala http://purl.obolibrary.org/obo/CHEBI_16449|http://purl.obolibrary.org/obo/CHEBI_16977|http://purl.obolibrary.org/obo/CHEBI_46217
T18 1024-1027 ChemicalEntity denotes Val http://purl.obolibrary.org/obo/CHEBI_27266|http://purl.obolibrary.org/obo/CHEBI_16414|http://purl.obolibrary.org/obo/CHEBI_30015
T15 973-976 ChemicalEntity denotes Ala http://purl.obolibrary.org/obo/CHEBI_16449|http://purl.obolibrary.org/obo/CHEBI_16977|http://purl.obolibrary.org/obo/CHEBI_46217
T13 938-945 ChemicalEntity denotes agarose http://purl.obolibrary.org/obo/CHEBI_2511|D012685
T10 427-430 ChemicalEntity denotes Ala http://purl.obolibrary.org/obo/CHEBI_16449|http://purl.obolibrary.org/obo/CHEBI_16977|http://purl.obolibrary.org/obo/CHEBI_46217
T9 418-425 ChemicalEntity denotes alanine http://purl.obolibrary.org/obo/CHEBI_16449
T6 410-413 ChemicalEntity denotes Val http://purl.obolibrary.org/obo/CHEBI_27266|http://purl.obolibrary.org/obo/CHEBI_16414|http://purl.obolibrary.org/obo/CHEBI_30015
T5 402-408 ChemicalEntity denotes valine http://purl.obolibrary.org/obo/CHEBI_27266
T4 129-135 ChemicalEntity denotes Mn-SOD D013482
T3 92-122 ChemicalEntity denotes manganese superoxide dismutase D013482
T2 32-38 ChemicalEntity denotes Mn-SOD D013482
T1 10-30 ChemicalEntity denotes superoxide dismutase D013482
T57898 1351-1356 GeneOrGeneProduct denotes MnSOD
T32139 725-730 GeneOrGeneProduct denotes MnSOD
T8 650-655 GeneOrGeneProduct denotes MnSOD
T7 520-525 GeneOrGeneProduct denotes MnSOD
T27489 303-308 GeneOrGeneProduct denotes MnSOD
T4985 171-179 GeneOrGeneProduct denotes probable
T4601 129-135 GeneOrGeneProduct denotes Mn-SOD
T68825 92-122 GeneOrGeneProduct denotes manganese superoxide dismutase
T46734 32-38 GeneOrGeneProduct denotes Mn-SOD
T35100 0-30 GeneOrGeneProduct denotes Manganese superoxide dismutase
T21651 1520-1535 DiseaseOrPhenotypicFeature denotes stone formation DISEASE
T6249 1442-1454 DiseaseOrPhenotypicFeature denotes urolithiasis D052878
T62180 737-750 DiseaseOrPhenotypicFeature denotes stone-forming DISEASE
T94234 691-703 DiseaseOrPhenotypicFeature denotes urolithiasis D052878
T39239 572-584 DiseaseOrPhenotypicFeature denotes urolithiasis D052878
T16384 266-281 DiseaseOrPhenotypicFeature denotes stone formation DISEASE
T55678 197-209 DiseaseOrPhenotypicFeature denotes urolithiasis D052878
T66957 62-74 DiseaseOrPhenotypicFeature denotes urolithiasis D052878
T53653 1274-1281 OrganismTaxon denotes patient
T31853 1232-1235 OrganismTaxon denotes Ala
T43140 1186-1193 OrganismTaxon denotes patient
T24931 1138-1141 OrganismTaxon denotes Ala
T95539 1079-1087 OrganismTaxon denotes patients
T19019 973-976 OrganismTaxon denotes Ala
T14973 427-430 OrganismTaxon denotes Ala
T8054 353-362 OrganismTaxon denotes scavenges

DisGeNET

Id Subject Object Predicate Lexical cue
T0 520-525 gene:6648 denotes MnSOD
T1 572-584 disease:C0451641 denotes urolithiasis
T2 650-655 gene:6648 denotes MnSOD
T3 691-703 disease:C0451641 denotes urolithiasis
R1 T0 T1 associated_with MnSOD,urolithiasis
R2 T2 T3 associated_with MnSOD,urolithiasis

PubmedHPO

Id Subject Object Predicate Lexical cue
T1 480-493 HP_0001427 denotes mitochondrial
T1 480-493 HP_0001427 denotes mitochondrial