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PubMed:17574969 JSONTXT

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DisGeNET

Id Subject Object Predicate Lexical cue
T0 19-24 gene:672 denotes BRCA1
T1 56-95 disease:C0346154 denotes malignant phyllodes tumor of the breast
T2 149-154 gene:672 denotes BRCA1
T3 106-123 disease:C0678222 denotes breast carcinomas
T4 239-244 gene:672 denotes BRCA1
T5 256-266 disease:C0007097 denotes carcinomas
T6 239-244 gene:672 denotes BRCA1
T7 390-410 disease:C0206693 denotes medullary carcinomas
T8 239-244 gene:672 denotes BRCA1
T9 306-323 disease:C1176475 denotes ductal carcinomas
T10 521-526 gene:672 denotes BRCA1
T11 574-613 disease:C0346154 denotes malignant phyllodes tumor of the breast
T12 1109-1114 gene:672 denotes BRCA1
T13 1059-1074 disease:C0010701 denotes phyllodes tumor
R1 T0 T1 associated_with BRCA1,malignant phyllodes tumor of the breast
R2 T2 T3 associated_with BRCA1,breast carcinomas
R3 T4 T5 associated_with BRCA1,carcinomas
R4 T6 T7 associated_with BRCA1,medullary carcinomas
R5 T8 T9 associated_with BRCA1,ductal carcinomas
R6 T10 T11 associated_with BRCA1,malignant phyllodes tumor of the breast
R7 T12 T13 associated_with BRCA1,phyllodes tumor

PubmedHPO

Id Subject Object Predicate Lexical cue
T1 106-123 HP_0003002 denotes breast carcinomas
T2 594-599 HP_0002664 denotes tumor
T3 594-613 HP_0003002 denotes tumor of the breast
T4 594-613 HP_0100013 denotes tumor of the breast
T5 724-749 HP_0003002 denotes Breast and Ovarian Cancer
T6 724-749 HP_0100013 denotes Breast and Ovarian Cancer
T7 735-749 HP_0100615 denotes Ovarian Cancer
T8 743-749 HP_0002664 denotes Cancer
T9 917-922 HP_0002664 denotes tumor
T10 1069-1074 HP_0002664 denotes tumor
T1 106-123 HP_0003002 denotes breast carcinomas
T2 594-599 HP_0002664 denotes tumor
T3 594-613 HP_0003002 denotes tumor of the breast
T4 594-613 HP_0100013 denotes tumor of the breast
T5 724-749 HP_0003002 denotes Breast and Ovarian Cancer
T6 724-749 HP_0100013 denotes Breast and Ovarian Cancer
T7 735-749 HP_0100615 denotes Ovarian Cancer
T8 743-749 HP_0002664 denotes Cancer
T9 917-922 HP_0002664 denotes tumor
T10 1069-1074 HP_0002664 denotes tumor

DisGeNET5_gene_disease

Id Subject Object Predicate Lexical cue
17574969-1#52#57#gene672 149-154 gene672 denotes BRCA1
17574969-1#9#26#diseaseC0678222 106-123 diseaseC0678222 denotes breast carcinomas
52#57#gene6729#26#diseaseC0678222 17574969-1#52#57#gene672 17574969-1#9#26#diseaseC0678222 associated_with BRCA1,breast carcinomas

PubCasesHPO

Id Subject Object Predicate Lexical cue
AB1 106-123 HP:0003002 denotes breast carcinomas
AB2 256-266 HP:0030731 denotes carcinomas
AB3 313-323 HP:0030731 denotes carcinomas
AB4 400-410 HP:0030731 denotes carcinomas

performance-test

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 89-95 http://purl.obolibrary.org/obo/UBERON_0000310 denotes breast
PD-UBERON-AE-B_T2 106-112 http://purl.obolibrary.org/obo/UBERON_0000310 denotes breast
PD-UBERON-AE-B_T3 607-613 http://purl.obolibrary.org/obo/UBERON_0000310 denotes breast
PD-UBERON-AE-B_T4 724-730 http://purl.obolibrary.org/obo/UBERON_0000310 denotes Breast
PD-UBERON-AE-B_T5 346-366 http://purl.obolibrary.org/obo/UBERON_0034768 denotes morphologic features

UBERON-AE

Id Subject Object Predicate Lexical cue
PD-UBERON-AE_T1 89-95 http://purl.obolibrary.org/obo/UBERON_0000310 denotes breast
PD-UBERON-AE_T2 106-112 http://purl.obolibrary.org/obo/UBERON_0000310 denotes breast
PD-UBERON-AE_T3 607-613 http://purl.obolibrary.org/obo/UBERON_0000310 denotes breast
PD-UBERON-AE_T4 724-730 http://purl.obolibrary.org/obo/UBERON_0000310 denotes Breast
PD-UBERON-AE_T5 346-366 http://purl.obolibrary.org/obo/UBERON_0034768 denotes morphologic features

PubCasesORDO

Id Subject Object Predicate Lexical cue
AB1 97-123 ORDO:227535 denotes Familial breast carcinomas
TI1 66-81 ORDO:180261 denotes phyllodes tumor
AB2 584-599 ORDO:180261 denotes phyllodes tumor
AB3 907-922 ORDO:180261 denotes phyllodes tumor
AB4 1059-1074 ORDO:180261 denotes phyllodes tumor

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-96 Sentence denotes Association of the BRCA1 missense variant R1699W with a malignant phyllodes tumor of the breast.
TextSentencer_T2 97-238 Sentence denotes Familial breast carcinomas that are attributable to BRCA1 or BRCA2 mutations have characteristic morphologic and immunhistochemical features.
TextSentencer_T3 239-472 Sentence denotes BRCA1-associated carcinomas are poorly differentiated infiltrating ductal carcinomas frequently exhibiting morphologic features of typical or atypical medullary carcinomas such as prominent lymphocytic infiltrate and pushing margins.
TextSentencer_T4 473-614 Sentence denotes We report on a patient carrying the deleterious BRCA1 germline mutation R1699W, who presented with a malignant phyllodes tumor of the breast.
TextSentencer_T5 615-811 Sentence denotes The re-investigation of archival material by a reference pathologist of the German Consortium for Hereditary Breast and Ovarian Cancer (GCHBOC) revealed BRCA-associated pronounced pushing margins.
TextSentencer_T6 812-1003 Sentence denotes In a total of 618 unrelated index patients who are registered in the GCHBOC database, no other phyllodes tumor has been described, while 10 carriers of the R1699W mutant have been identified.
TextSentencer_T7 1004-1185 Sentence denotes We conclude that the histopathologic appearance of the phyllodes tumor indicates an association with the BRCA1 mutation R1699W although it is a rare event in BRCA-positive families.
T1 0-96 Sentence denotes Association of the BRCA1 missense variant R1699W with a malignant phyllodes tumor of the breast.
T2 97-238 Sentence denotes Familial breast carcinomas that are attributable to BRCA1 or BRCA2 mutations have characteristic morphologic and immunhistochemical features.
T3 239-472 Sentence denotes BRCA1-associated carcinomas are poorly differentiated infiltrating ductal carcinomas frequently exhibiting morphologic features of typical or atypical medullary carcinomas such as prominent lymphocytic infiltrate and pushing margins.
T4 473-614 Sentence denotes We report on a patient carrying the deleterious BRCA1 germline mutation R1699W, who presented with a malignant phyllodes tumor of the breast.
T5 615-811 Sentence denotes The re-investigation of archival material by a reference pathologist of the German Consortium for Hereditary Breast and Ovarian Cancer (GCHBOC) revealed BRCA-associated pronounced pushing margins.
T6 812-1003 Sentence denotes In a total of 618 unrelated index patients who are registered in the GCHBOC database, no other phyllodes tumor has been described, while 10 carriers of the R1699W mutant have been identified.
T7 1004-1185 Sentence denotes We conclude that the histopathologic appearance of the phyllodes tumor indicates an association with the BRCA1 mutation R1699W although it is a rare event in BRCA-positive families.