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PubMed:1734865 JSONTXT

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DisGeNET

Id Subject Object Predicate Lexical cue
T0 75-92 gene:367 denotes androgen receptor
T1 115-158 disease:C1839259 denotes X-linked spinal and bulbar muscular atrophy
R1 T0 T1 associated_with androgen receptor,X-linked spinal and bulbar muscular atrophy

PubmedHPO

Id Subject Object Predicate Lexical cue
T1 160-168 HP_0001417 denotes X-linked
T2 187-203 HP_0003202 denotes muscular atrophy
T1 160-168 HP_0001417 denotes X-linked
T2 187-203 HP_0003202 denotes muscular atrophy

jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 75-97 DNA denotes androgen receptor gene
T2 335-357 DNA denotes androgen receptor gene
T3 454-466 DNA denotes DNA fragment
T4 482-493 DNA denotes CAG repeats
T5 597-624 DNA denotes end-labelled reverse primer
T6 637-643 DNA denotes 3' end
T7 647-658 DNA denotes CAG repeats
T8 686-697 DNA denotes CAG repeats
T9 775-790 DNA denotes primer products
T10 927-938 DNA denotes CAG repeats
T11 962-986 DNA denotes polymorphic dinucleotide
T12 991-1012 DNA denotes trinucleotide repeats

DisGeNET5_gene_disease

Id Subject Object Predicate Lexical cue
1734865-0#75#92#gene367 75-92 gene367 denotes androgen receptor
1734865-0#115#158#diseaseC1839259 115-158 diseaseC1839259 denotes X-linked spinal and bulbar muscular atrophy
75#92#gene367115#158#diseaseC1839259 1734865-0#75#92#gene367 1734865-0#115#158#diseaseC1839259 associated_with androgen receptor,X-linked spinal and bulbar muscular atrophy

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-159 Sentence denotes A novel primer extension method to detect the number of CAG repeats in the androgen receptor gene in families with X-linked spinal and bulbar muscular atrophy.
S2 160-358 Sentence denotes X-linked spinal and bulbar muscular atrophy (SBMA), an adult-onset form of motor neuron disease, was recently reported to be caused by amplification of the CAG repeats in the androgen receptor gene.
S3 359-443 Sentence denotes We report here a simple and rapid strategy to detect the precise number of the CAGs.
S4 444-760 Sentence denotes After the DNA fragment containing the CAG repeats is amplified by the polymerase chain reaction, a primer extension is carried out; the extension of the end-labelled reverse primer adjacent to 3' end of CAG repeats stops at the first T after CAG repeats with the incorporation of dideoxy ATP in the reaction mixture.
S5 761-873 Sentence denotes The resultant primer products are analysed by denaturing polyacrylamide gel electrophoresis and autoradiography.
S6 874-1013 Sentence denotes This method could be quite useful to detect not only CAG repeats in SBMA but also other polymorphic dinucleotide and trinucleotide repeats.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 0-31 NP denotes A novel primer extension method
C3 56-59 NP denotes CAG
C2 56-67 NP denotes CAG repeats
C4 71-97 NP denotes the androgen receptor gene
C5 115-158 NP denotes X-linked spinal and bulbar muscular atrophy
C6 160-210 NP denotes X-linked spinal and bulbar muscular atrophy (SBMA)
C7 212-255 NP denotes an adult-onset form of motor neuron disease
C9 316-319 NP denotes CAG
C8 312-327 NP denotes the CAG repeats
C10 331-357 NP denotes the androgen receptor gene
C11 374-401 NP denotes a simple and rapid strategy
C12 434-442 NP denotes the CAGs
C14 482-485 NP denotes CAG
C13 478-493 NP denotes the CAG repeats
C15 541-559 NP denotes a primer extension
C16 576-589 NP denotes the extension
C18 647-650 NP denotes CAG
C17 647-658 NP denotes CAG repeats
C20 686-689 NP denotes CAG
C19 686-697 NP denotes CAG repeats
C21 874-885 NP denotes This method
C23 927-930 NP denotes CAG
C22 927-938 NP denotes CAG repeats
C24 942-946 NP denotes SBMA
R1 C6 C5 coref-ident X-linked spinal and bulbar muscular atrophy (SBMA),X-linked spinal and bulbar muscular atrophy
R2 C7 C6 coref-appos an adult-onset form of motor neuron disease,X-linked spinal and bulbar muscular atrophy (SBMA)
R3 C9 C3 coref-ident CAG,CAG
R4 C8 C2 coref-ident the CAG repeats,CAG repeats
R5 C10 C4 coref-ident the androgen receptor gene,the androgen receptor gene
R6 C11 C1 coref-ident a simple and rapid strategy,A novel primer extension method
R7 C12 C9 coref-ident the CAGs,CAG
R8 C14 C12 coref-ident CAG,the CAGs
R9 C13 C8 coref-ident the CAG repeats,the CAG repeats
R10 C16 C15 coref-ident the extension,a primer extension
R11 C18 C14 coref-ident CAG,CAG
R12 C17 C13 coref-ident CAG repeats,the CAG repeats
R13 C20 C18 coref-ident CAG,CAG
R14 C19 C17 coref-ident CAG repeats,CAG repeats
R15 C21 C11 coref-ident This method,a simple and rapid strategy
R16 C23 C20 coref-ident CAG,CAG
R17 C22 C19 coref-ident CAG repeats,CAG repeats
R18 C24 C6 coref-ident SBMA,X-linked spinal and bulbar muscular atrophy (SBMA)

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 8-31 other_name denotes primer extension method
T2 56-67 polynucleotide denotes CAG repeats
T3 75-97 DNA_domain_or_region denotes androgen receptor gene
T4 115-130 other_name denotes X-linked spinal
T5 135-158 other_name denotes bulbar muscular atrophy
T6 335-357 DNA_domain_or_region denotes androgen receptor gene
T7 438-442 polynucleotide denotes CAGs
T8 454-466 DNA_molecule denotes DNA fragment
T9 482-493 DNA_domain_or_region denotes CAG repeats
T10 514-539 other_name denotes polymerase chain reaction
T11 543-559 other_name denotes primer extension
T12 597-624 DNA_molecule denotes end-labelled reverse primer
T13 637-643 DNA_domain_or_region denotes 3' end
T14 647-658 DNA_domain_or_region denotes CAG repeats
T15 678-679 nucleotide denotes T
T16 686-697 DNA_domain_or_region denotes CAG repeats
T17 724-735 nucleotide denotes dideoxy ATP
T18 775-790 DNA_molecule denotes primer products
T19 807-852 other_name denotes denaturing polyacrylamide gel electrophoresis
T20 857-872 other_name denotes autoradiography
T21 927-938 DNA_domain_or_region denotes CAG repeats
T22 942-946 other_name denotes SBMA
T23 962-986 DNA_domain_or_region denotes polymorphic dinucleotide
T24 991-1012 DNA_domain_or_region denotes trinucleotide repeats