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LitCoin-sentences

Id Subject Object Predicate Lexical cue
T1 0-123 Sentence denotes Over-expression of BMP4 and BMP5 in a child with axial skeletal malformations and heterotopic ossification: a new syndrome.
T2 124-268 Sentence denotes Bone morphogenetic proteins (BMPs) are a highly conserved class of signaling molecules that induce ectopic cartilage and bone formation in vivo.
T3 269-528 Sentence denotes Dysregulated expression of bone morphogenetic protein 4 (BMP4) is found in the cells of patients who have fibrodysplasia ossificans progressiva (FOP), a genetic disorder of axial and appendicular skeletal malformation and progressive heterotopic ossification.
T4 529-765 Sentence denotes Loss of function mutations in the bone morphogenetic protein 5 (bmp5) gene leading to under-expression of BMP5 cause the murine short ear syndrome, characterized by small malformed ears and a broad range of axial skeletal malformations.
T5 766-981 Sentence denotes We found features reminiscent of both the short ear mouse and FOP in a child with malformed external ears, multiple malformations of the axial skeleton, and progressive heterotopic ossification in the neck and back.
T6 982-1133 Sentence denotes We examined BMP mRNA expression in transformed lymphocytes by semi-quantitative RT-PCR and protein expression by ELISA assays and immunohistochemistry.
T7 1134-1262 Sentence denotes Elevated levels of BMP4 and BMP5 mRNA and protein were detected in the patient's cells while levels of BMP2 mRNA were unchanged.
T8 1263-1437 Sentence denotes Our data suggest that dysregulated expression of BMP4 and BMP5 genes is associated with an array of human axial skeletal abnormalities similar to the short ear mouse and FOP.

LitCoin-entities-OrganismTaxon-PD

Id Subject Object Predicate Lexical cue db_id
T1 818-823 OrganismTaxon denotes mouse NCBItxid:10090|NCBItxid:10088
T3 1363-1368 OrganismTaxon denotes human NCBItxid:9606
T4 1423-1428 OrganismTaxon denotes mouse NCBItxid:10090|NCBItxid:10088

LitCoin-entities

Id Subject Object Predicate Lexical cue db_id
4050 19-23 GeneOrGeneProduct denotes BMP4 NCBIGene:652
4051 28-32 GeneOrGeneProduct denotes BMP5 NCBIGene:653
4052 49-77 DiseaseOrPhenotypicFeature denotes axial skeletal malformations MESH:D001848
4053 82-106 DiseaseOrPhenotypicFeature denotes heterotopic ossification MESH:D009999
4054 124-151 GeneOrGeneProduct denotes Bone morphogenetic proteins NCBIGene:649|NCBIGene:650|NCBIGene:652|NCBIGene:653
4055 153-157 GeneOrGeneProduct denotes BMPs NCBIGene:649|NCBIGene:650|NCBIGene:652|NCBIGene:653
4056 223-259 DiseaseOrPhenotypicFeature denotes ectopic cartilage and bone formation MESH:D001847|MESH:D002357
4057 296-324 GeneOrGeneProduct denotes bone morphogenetic protein 4 NCBIGene:652
4058 326-330 GeneOrGeneProduct denotes BMP4 NCBIGene:652
4059 357-365 OrganismTaxon denotes patients NCBITaxon:9606
4060 375-412 DiseaseOrPhenotypicFeature denotes fibrodysplasia ossificans progressiva MESH:D009221
4061 414-417 DiseaseOrPhenotypicFeature denotes FOP MESH:D009221
4062 442-486 DiseaseOrPhenotypicFeature denotes axial and appendicular skeletal malformation MESH:D001848
4063 503-527 DiseaseOrPhenotypicFeature denotes heterotopic ossification MESH:D009999
4064 563-591 GeneOrGeneProduct denotes bone morphogenetic protein 5 NCBIGene:653
4065 593-597 GeneOrGeneProduct denotes bmp5 NCBIGene:653
4066 635-639 GeneOrGeneProduct denotes BMP5 NCBIGene:653
4067 650-656 OrganismTaxon denotes murine NCBITaxon:10090
4068 657-675 DiseaseOrPhenotypicFeature denotes short ear syndrome MESH:D004427
4069 736-764 DiseaseOrPhenotypicFeature denotes axial skeletal malformations MESH:D001848
4070 818-823 OrganismTaxon denotes mouse NCBITaxon:10090
4071 828-831 DiseaseOrPhenotypicFeature denotes FOP MESH:D009221
4072 848-871 DiseaseOrPhenotypicFeature denotes malformed external ears MESH:D004426
4073 873-917 DiseaseOrPhenotypicFeature denotes multiple malformations of the axial skeleton MESH:D001848
4074 935-959 DiseaseOrPhenotypicFeature denotes heterotopic ossification MESH:D009999
4075 994-997 GeneOrGeneProduct denotes BMP NCBIGene:649|NCBIGene:650|NCBIGene:652|NCBIGene:653
4076 1153-1157 GeneOrGeneProduct denotes BMP4 NCBIGene:652
4077 1162-1166 GeneOrGeneProduct denotes BMP5 NCBIGene:653
4078 1205-1212 OrganismTaxon denotes patient NCBITaxon:9606
4079 1237-1241 GeneOrGeneProduct denotes BMP2 NCBIGene:650
4080 1312-1316 GeneOrGeneProduct denotes BMP4 NCBIGene:652
4081 1321-1325 GeneOrGeneProduct denotes BMP5 NCBIGene:653
4082 1363-1368 OrganismTaxon denotes human NCBITaxon:9606
4083 1369-1397 DiseaseOrPhenotypicFeature denotes axial skeletal abnormalities MESH:D001848
4084 1423-1428 OrganismTaxon denotes mouse NCBITaxon:10090
4085 1433-1436 DiseaseOrPhenotypicFeature denotes FOP MESH:D009221

LitCoin_Mondo

Id Subject Object Predicate Lexical cue mondo_id
T1 375-412 DiseaseOrPhenotypicFeature denotes fibrodysplasia ossificans progressiva 0007606

LitCoin-GeneOrGeneProduct-v2

Id Subject Object Predicate Lexical cue
T1 19-23 GeneOrGeneProduct denotes BMP4
T2 28-32 GeneOrGeneProduct denotes BMP5
T3 114-122 GeneOrGeneProduct denotes syndrome
T4 124-151 GeneOrGeneProduct denotes Bone morphogenetic proteins
T5 153-157 GeneOrGeneProduct denotes BMPs
T6 172-181 GeneOrGeneProduct denotes conserved
T7 296-324 GeneOrGeneProduct denotes bone morphogenetic protein 4
T8 326-330 GeneOrGeneProduct denotes BMP4
T9 563-591 GeneOrGeneProduct denotes bone morphogenetic protein 5
T10 593-597 GeneOrGeneProduct denotes bmp5
T11 635-639 GeneOrGeneProduct denotes BMP5
T12 667-675 GeneOrGeneProduct denotes syndrome
T13 694-699 GeneOrGeneProduct denotes small
T14 700-709 GeneOrGeneProduct denotes malformed
T15 721-726 GeneOrGeneProduct denotes broad
T16 848-857 GeneOrGeneProduct denotes malformed
T17 873-881 GeneOrGeneProduct denotes multiple
T18 998-1002 GeneOrGeneProduct denotes mRNA
T19 1029-1040 GeneOrGeneProduct denotes lymphocytes
T20 1044-1048 GeneOrGeneProduct denotes semi
T21 1073-1080 GeneOrGeneProduct denotes protein
T22 1153-1157 GeneOrGeneProduct denotes BMP4
T23 1162-1166 GeneOrGeneProduct denotes BMP5
T24 1167-1171 GeneOrGeneProduct denotes mRNA
T25 1176-1183 GeneOrGeneProduct denotes protein
T26 1237-1241 GeneOrGeneProduct denotes BMP2
T27 1242-1246 GeneOrGeneProduct denotes mRNA
T28 1312-1316 GeneOrGeneProduct denotes BMP4
T29 1321-1325 GeneOrGeneProduct denotes BMP5
T30 1398-1405 GeneOrGeneProduct denotes similar

LitCoin-GeneOrGeneProduct-v0

Id Subject Object Predicate Lexical cue
T1 19-23 GeneOrGeneProduct denotes BMP4
T2 28-32 GeneOrGeneProduct denotes BMP5
T3 64-77 GeneOrGeneProduct denotes malformations
T4 114-122 GeneOrGeneProduct denotes syndrome
T5 124-151 GeneOrGeneProduct denotes Bone morphogenetic proteins
T6 153-157 GeneOrGeneProduct denotes BMPs
T7 165-171 GeneOrGeneProduct denotes highly
T8 172-181 GeneOrGeneProduct denotes conserved
T9 191-210 GeneOrGeneProduct denotes signaling molecules
T10 216-222 GeneOrGeneProduct denotes induce
T11 245-249 GeneOrGeneProduct denotes bone
T12 250-259 GeneOrGeneProduct denotes formation
T13 296-324 GeneOrGeneProduct denotes bone morphogenetic protein 4
T14 326-330 GeneOrGeneProduct denotes BMP4
T15 348-353 GeneOrGeneProduct denotes cells
T16 413-421 GeneOrGeneProduct denotes (FOP), a
T17 474-486 GeneOrGeneProduct denotes malformation
T18 546-555 GeneOrGeneProduct denotes mutations
T19 563-591 GeneOrGeneProduct denotes bone morphogenetic protein 5
T20 593-597 GeneOrGeneProduct denotes bmp5
T21 635-639 GeneOrGeneProduct denotes BMP5
T22 667-675 GeneOrGeneProduct denotes syndrome
T23 694-699 GeneOrGeneProduct denotes small
T24 700-709 GeneOrGeneProduct denotes malformed
T25 710-714 GeneOrGeneProduct denotes ears
T26 721-726 GeneOrGeneProduct denotes broad
T27 727-732 GeneOrGeneProduct denotes range
T28 751-764 GeneOrGeneProduct denotes malformations
T29 832-836 GeneOrGeneProduct denotes in a
T30 848-857 GeneOrGeneProduct denotes malformed
T31 867-871 GeneOrGeneProduct denotes ears
T32 873-881 GeneOrGeneProduct denotes multiple
T33 882-895 GeneOrGeneProduct denotes malformations
T34 998-1002 GeneOrGeneProduct denotes mRNA
T35 1017-1028 GeneOrGeneProduct denotes transformed
T36 1029-1040 GeneOrGeneProduct denotes lymphocytes
T37 1044-1048 GeneOrGeneProduct denotes semi
T38 1073-1080 GeneOrGeneProduct denotes protein
T39 1153-1157 GeneOrGeneProduct denotes BMP4
T40 1162-1166 GeneOrGeneProduct denotes BMP5
T41 1167-1171 GeneOrGeneProduct denotes mRNA
T42 1176-1183 GeneOrGeneProduct denotes protein
T43 1215-1220 GeneOrGeneProduct denotes cells
T44 1237-1241 GeneOrGeneProduct denotes BMP2
T45 1242-1246 GeneOrGeneProduct denotes mRNA
T46 1312-1316 GeneOrGeneProduct denotes BMP4
T47 1321-1325 GeneOrGeneProduct denotes BMP5
T48 1398-1405 GeneOrGeneProduct denotes similar

LitCoin-Disease-MeSH

Id Subject Object Predicate Lexical cue originalLabel
T1 82-106 DiseaseOrPhenotypicFeature denotes heterotopic ossification D009999
T2 114-122 DiseaseOrPhenotypicFeature denotes syndrome D013577
T3 375-412 DiseaseOrPhenotypicFeature denotes fibrodysplasia ossificans progressiva D009221
T4 414-417 DiseaseOrPhenotypicFeature denotes FOP D009221
T5 422-438 DiseaseOrPhenotypicFeature denotes genetic disorder D030342
T6 503-527 DiseaseOrPhenotypicFeature denotes heterotopic ossification D009999
T7 667-675 DiseaseOrPhenotypicFeature denotes syndrome D013577
T8 828-831 DiseaseOrPhenotypicFeature denotes FOP D009221
T9 935-959 DiseaseOrPhenotypicFeature denotes heterotopic ossification D009999
T10 1433-1436 DiseaseOrPhenotypicFeature denotes FOP D009221

LitCoin-GeneOrGeneProduct-v3

Id Subject Object Predicate Lexical cue
T1 19-23 GeneOrGeneProduct denotes BMP4
T2 28-32 GeneOrGeneProduct denotes BMP5
T3 129-151 GeneOrGeneProduct denotes morphogenetic proteins
T4 153-157 GeneOrGeneProduct denotes BMPs
T5 296-324 GeneOrGeneProduct denotes bone morphogenetic protein 4
T6 326-330 GeneOrGeneProduct denotes BMP4
T7 563-591 GeneOrGeneProduct denotes bone morphogenetic protein 5
T8 593-597 GeneOrGeneProduct denotes bmp5
T9 635-639 GeneOrGeneProduct denotes BMP5
T10 1044-1048 GeneOrGeneProduct denotes semi
T11 1073-1091 GeneOrGeneProduct denotes protein expression
T12 1153-1157 GeneOrGeneProduct denotes BMP4
T13 1162-1166 GeneOrGeneProduct denotes BMP5
T14 1237-1241 GeneOrGeneProduct denotes BMP2
T15 1312-1316 GeneOrGeneProduct denotes BMP4
T16 1321-1325 GeneOrGeneProduct denotes BMP5

LitCoin_Mondo_095

Id Subject Object Predicate Lexical cue mondo_id
T1 38-43 DiseaseOrPhenotypicFeature denotes child 0017015
T2 114-122 DiseaseOrPhenotypicFeature denotes syndrome 0002254
T3 375-412 DiseaseOrPhenotypicFeature denotes fibrodysplasia ossificans progressiva 0007606|0003964
T5 414-417 DiseaseOrPhenotypicFeature denotes FOP 0003964|0007606
T7 422-438 DiseaseOrPhenotypicFeature denotes genetic disorder 0003847
T8 667-675 DiseaseOrPhenotypicFeature denotes syndrome 0002254
T9 828-831 DiseaseOrPhenotypicFeature denotes FOP 0003964|0007606
T11 837-842 DiseaseOrPhenotypicFeature denotes child 0017015
T12 1433-1436 DiseaseOrPhenotypicFeature denotes FOP 0003964|0007606

LitCoin-MeSH-Disease-2

Id Subject Object Predicate Lexical cue ID:
T1 49-77 DiseaseOrPhenotypicFeature denotes axial skeletal malformations DISEASE
T2 82-106 DiseaseOrPhenotypicFeature denotes heterotopic ossification D009999
T3 114-122 DiseaseOrPhenotypicFeature denotes syndrome D013577
T4 223-259 DiseaseOrPhenotypicFeature denotes ectopic cartilage and bone formation DISEASE
T5 375-412 DiseaseOrPhenotypicFeature denotes fibrodysplasia ossificans progressiva D009221
T6 414-417 DiseaseOrPhenotypicFeature denotes FOP D009221
T7 422-438 DiseaseOrPhenotypicFeature denotes genetic disorder D030342
T8 442-486 DiseaseOrPhenotypicFeature denotes axial and appendicular skeletal malformation DISEASE
T9 503-527 DiseaseOrPhenotypicFeature denotes heterotopic ossification D009999
T10 667-675 DiseaseOrPhenotypicFeature denotes syndrome D013577
T11 736-764 DiseaseOrPhenotypicFeature denotes axial skeletal malformations DISEASE
T12 828-831 DiseaseOrPhenotypicFeature denotes FOP D009221
T13 848-871 DiseaseOrPhenotypicFeature denotes malformed external ears DISEASE
T14 873-917 DiseaseOrPhenotypicFeature denotes multiple malformations of the axial skeleton DISEASE
T15 935-959 DiseaseOrPhenotypicFeature denotes heterotopic ossification D009999
T16 1369-1397 DiseaseOrPhenotypicFeature denotes axial skeletal abnormalities DISEASE
T17 1433-1436 DiseaseOrPhenotypicFeature denotes FOP D009221

LitCoin-MONDO_bioort2019

Id Subject Object Predicate Lexical cue #label
T1 49-77 DiseaseOrPhenotypicFeature denotes axial skeletal malformations DISEASE
T2 82-106 DiseaseOrPhenotypicFeature denotes heterotopic ossification D009999
T3 223-259 DiseaseOrPhenotypicFeature denotes ectopic cartilage and bone formation DISEASE
T4 375-412 DiseaseOrPhenotypicFeature denotes fibrodysplasia ossificans progressiva D009221
T5 414-417 DiseaseOrPhenotypicFeature denotes FOP D009221
T6 442-486 DiseaseOrPhenotypicFeature denotes axial and appendicular skeletal malformation DISEASE
T7 503-527 DiseaseOrPhenotypicFeature denotes heterotopic ossification D009999
T8 657-675 DiseaseOrPhenotypicFeature denotes short ear syndrome EisukeAdded
T9 736-764 DiseaseOrPhenotypicFeature denotes axial skeletal malformations DISEASE
T10 828-831 DiseaseOrPhenotypicFeature denotes FOP D009221
T11 848-871 DiseaseOrPhenotypicFeature denotes malformed external ears DISEASE
T12 873-917 DiseaseOrPhenotypicFeature denotes multiple malformations of the axial skeleton DISEASE
T13 935-959 DiseaseOrPhenotypicFeature denotes heterotopic ossification D009999
T14 1369-1397 DiseaseOrPhenotypicFeature denotes axial skeletal abnormalities DISEASE
T15 1433-1436 DiseaseOrPhenotypicFeature denotes FOP D009221

LitCoin-NCBITaxon-2

Id Subject Object Predicate Lexical cue
T1 357-365 OrganismTaxon denotes patients
T2 650-656 OrganismTaxon denotes murine
T3 818-823 OrganismTaxon denotes mouse
T4 1363-1368 OrganismTaxon denotes human
T5 1423-1428 OrganismTaxon denotes mouse

LitCoin-training-merged

Id Subject Object Predicate Lexical cue #label
T16 1321-1325 GeneOrGeneProduct denotes BMP5
T15 1312-1316 GeneOrGeneProduct denotes BMP4
T14 1237-1241 GeneOrGeneProduct denotes BMP2
T13 1162-1166 GeneOrGeneProduct denotes BMP5
T12 1153-1157 GeneOrGeneProduct denotes BMP4
T11 1073-1091 GeneOrGeneProduct denotes protein expression
T10 1044-1048 GeneOrGeneProduct denotes semi
T9 635-639 GeneOrGeneProduct denotes BMP5
T8 593-597 GeneOrGeneProduct denotes bmp5
T7 563-591 GeneOrGeneProduct denotes bone morphogenetic protein 5
T6 326-330 GeneOrGeneProduct denotes BMP4
T5 296-324 GeneOrGeneProduct denotes bone morphogenetic protein 4
T4 153-157 GeneOrGeneProduct denotes BMPs
T3 129-151 GeneOrGeneProduct denotes morphogenetic proteins
T2 28-32 GeneOrGeneProduct denotes BMP5
T1 19-23 GeneOrGeneProduct denotes BMP4
T28524 1433-1436 DiseaseOrPhenotypicFeature denotes FOP D009221
T64468 1369-1397 DiseaseOrPhenotypicFeature denotes axial skeletal abnormalities DISEASE
T1021 935-959 DiseaseOrPhenotypicFeature denotes heterotopic ossification D009999
T28070 873-917 DiseaseOrPhenotypicFeature denotes multiple malformations of the axial skeleton DISEASE
T76495 848-871 DiseaseOrPhenotypicFeature denotes malformed external ears DISEASE
T83874 828-831 DiseaseOrPhenotypicFeature denotes FOP D009221
T28987 736-764 DiseaseOrPhenotypicFeature denotes axial skeletal malformations DISEASE
T79687 657-675 DiseaseOrPhenotypicFeature denotes short ear syndrome EisukeAdded
T18145 503-527 DiseaseOrPhenotypicFeature denotes heterotopic ossification D009999
T59365 442-486 DiseaseOrPhenotypicFeature denotes axial and appendicular skeletal malformation DISEASE
T23892 414-417 DiseaseOrPhenotypicFeature denotes FOP D009221
T61458 375-412 DiseaseOrPhenotypicFeature denotes fibrodysplasia ossificans progressiva D009221
T17942 223-259 DiseaseOrPhenotypicFeature denotes ectopic cartilage and bone formation DISEASE
T23880 82-106 DiseaseOrPhenotypicFeature denotes heterotopic ossification D009999
T93284 49-77 DiseaseOrPhenotypicFeature denotes axial skeletal malformations DISEASE
T66513 1423-1428 OrganismTaxon denotes mouse
T70354 1363-1368 OrganismTaxon denotes human
T10025 818-823 OrganismTaxon denotes mouse
T23195 650-656 OrganismTaxon denotes murine
T58105 357-365 OrganismTaxon denotes patients

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-123 Sentence denotes Over-expression of BMP4 and BMP5 in a child with axial skeletal malformations and heterotopic ossification: a new syndrome.
TextSentencer_T2 124-268 Sentence denotes Bone morphogenetic proteins (BMPs) are a highly conserved class of signaling molecules that induce ectopic cartilage and bone formation in vivo.
TextSentencer_T3 269-528 Sentence denotes Dysregulated expression of bone morphogenetic protein 4 (BMP4) is found in the cells of patients who have fibrodysplasia ossificans progressiva (FOP), a genetic disorder of axial and appendicular skeletal malformation and progressive heterotopic ossification.
TextSentencer_T4 529-765 Sentence denotes Loss of function mutations in the bone morphogenetic protein 5 (bmp5) gene leading to under-expression of BMP5 cause the murine short ear syndrome, characterized by small malformed ears and a broad range of axial skeletal malformations.
TextSentencer_T5 766-981 Sentence denotes We found features reminiscent of both the short ear mouse and FOP in a child with malformed external ears, multiple malformations of the axial skeleton, and progressive heterotopic ossification in the neck and back.
TextSentencer_T6 982-1133 Sentence denotes We examined BMP mRNA expression in transformed lymphocytes by semi-quantitative RT-PCR and protein expression by ELISA assays and immunohistochemistry.
TextSentencer_T7 1134-1262 Sentence denotes Elevated levels of BMP4 and BMP5 mRNA and protein were detected in the patient's cells while levels of BMP2 mRNA were unchanged.
TextSentencer_T8 1263-1437 Sentence denotes Our data suggest that dysregulated expression of BMP4 and BMP5 genes is associated with an array of human axial skeletal abnormalities similar to the short ear mouse and FOP.
T1 0-123 Sentence denotes Over-expression of BMP4 and BMP5 in a child with axial skeletal malformations and heterotopic ossification: a new syndrome.
T2 124-268 Sentence denotes Bone morphogenetic proteins (BMPs) are a highly conserved class of signaling molecules that induce ectopic cartilage and bone formation in vivo.
T3 269-528 Sentence denotes Dysregulated expression of bone morphogenetic protein 4 (BMP4) is found in the cells of patients who have fibrodysplasia ossificans progressiva (FOP), a genetic disorder of axial and appendicular skeletal malformation and progressive heterotopic ossification.
T4 529-765 Sentence denotes Loss of function mutations in the bone morphogenetic protein 5 (bmp5) gene leading to under-expression of BMP5 cause the murine short ear syndrome, characterized by small malformed ears and a broad range of axial skeletal malformations.
T5 766-981 Sentence denotes We found features reminiscent of both the short ear mouse and FOP in a child with malformed external ears, multiple malformations of the axial skeleton, and progressive heterotopic ossification in the neck and back.
T6 982-1133 Sentence denotes We examined BMP mRNA expression in transformed lymphocytes by semi-quantitative RT-PCR and protein expression by ELISA assays and immunohistochemistry.
T7 1134-1262 Sentence denotes Elevated levels of BMP4 and BMP5 mRNA and protein were detected in the patient's cells while levels of BMP2 mRNA were unchanged.
T8 1263-1437 Sentence denotes Our data suggest that dysregulated expression of BMP4 and BMP5 genes is associated with an array of human axial skeletal abnormalities similar to the short ear mouse and FOP.

DisGeNET

Id Subject Object Predicate Lexical cue
T0 563-591 gene:653 denotes bone morphogenetic protein 5
T1 751-764 disease:C0000768 denotes malformations
T2 593-597 gene:653 denotes bmp5
T3 751-764 disease:C0000768 denotes malformations
T4 635-639 gene:653 denotes BMP5
T5 751-764 disease:C0000768 denotes malformations
R1 T0 T1 associated_with bone morphogenetic protein 5,malformations
R2 T2 T3 associated_with bmp5,malformations
R3 T4 T5 associated_with BMP5,malformations

PubmedHPO

Id Subject Object Predicate Lexical cue
T1 223-259 HP_0011986 denotes ectopic cartilage and bone formation
T2 465-486 HP_0000924 denotes skeletal malformation
T3 503-527 HP_0011986 denotes heterotopic ossification
T4 657-666 HP_0400005 denotes short ear
T5 700-714 HP_0000377 denotes malformed ears
T6 700-714 HP_0000598 denotes malformed ears
T7 700-714 HP_0000356 denotes malformed ears
T8 742-764 HP_0000924 denotes skeletal malformations
T9 808-817 HP_0400005 denotes short ear
T10 848-871 HP_0000377 denotes malformed external ears
T11 848-871 HP_0000356 denotes malformed external ears
T12 848-871 HP_0008572 denotes malformed external ears
T13 935-959 HP_0011986 denotes heterotopic ossification
T14 1375-1397 HP_0000924 denotes skeletal abnormalities
T15 1413-1422 HP_0400005 denotes short ear

DisGeNET5_gene_disease

Id Subject Object Predicate Lexical cue
17345627-7#49#53#gene652 1312-1316 gene652 denotes BMP4
17345627-7#170#173#diseaseC0016037 1433-1436 diseaseC0016037 denotes FOP
49#53#gene652170#173#diseaseC0016037 17345627-7#49#53#gene652 17345627-7#170#173#diseaseC0016037 associated_with BMP4,FOP

PubCasesHPO

Id Subject Object Predicate Lexical cue
AB1 657-666 HP:0400005 denotes short ear
AB2 808-817 HP:0400005 denotes short ear
AB3 1413-1422 HP:0400005 denotes short ear

PubCasesORDO

Id Subject Object Predicate Lexical cue
AB1 375-412 ORDO:337 denotes fibrodysplasia ossificans progressiva
AB2 414-417 ORDO:337 denotes FOP
AB3 828-831 ORDO:337 denotes FOP
AB4 1433-1436 ORDO:337 denotes FOP

performance-test

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 909-917 http://purl.obolibrary.org/obo/UBERON_0004288 denotes skeleton
PD-UBERON-AE-B_T2 452-473 http://purl.obolibrary.org/obo/UBERON_0002091 denotes appendicular skeletal
PD-UBERON-AE-B_T3 663-666 http://purl.obolibrary.org/obo/UBERON_0001690 denotes ear
PD-UBERON-AE-B_T4 710-714 http://purl.obolibrary.org/obo/UBERON_0001690 denotes ears
PD-UBERON-AE-B_T5 814-817 http://purl.obolibrary.org/obo/UBERON_0001690 denotes ear
PD-UBERON-AE-B_T6 867-871 http://purl.obolibrary.org/obo/UBERON_0001690 denotes ears
PD-UBERON-AE-B_T7 1419-1422 http://purl.obolibrary.org/obo/UBERON_0001690 denotes ear
PD-UBERON-AE-B_T8 858-871 http://purl.obolibrary.org/obo/UBERON_0001691 denotes external ears
PD-UBERON-AE-B_T9 967-971 http://purl.obolibrary.org/obo/UBERON_0000974 denotes neck

biored-valid-deepseek-nr-ng

Id Subject Object Predicate Lexical cue
T1 19-23 GeneOrGeneProduct denotes BMP4
T2 28-32 GeneOrGeneProduct denotes BMP5
T3 153-157 GeneOrGeneProduct denotes BMPs
T4 326-330 GeneOrGeneProduct denotes BMP4
T5 414-417 DiseaseOrPhenotypicFeature denotes FOP
T6 593-597 GeneOrGeneProduct denotes bmp5
T7 635-639 GeneOrGeneProduct denotes BMP5
T8 828-831 DiseaseOrPhenotypicFeature denotes FOP
T9 1062-1065 ChemicalEntity denotes RT-
T10 1065-1068 ChemicalEntity denotes PCR
T11 1095-1100 ChemicalEntity denotes ELISA
T12 1237-1241 GeneOrGeneProduct denotes BMP2

biored-valid

Id Subject Object Predicate Lexical cue
T1 19-23 GeneOrGeneProduct denotes BMP4
T2 28-32 GeneOrGeneProduct denotes BMP5
T3 49-77 DiseaseOrPhenotypicFeature denotes axial skeletal malformations
T4 82-106 DiseaseOrPhenotypicFeature denotes heterotopic ossification
T5 124-151 GeneOrGeneProduct denotes Bone morphogenetic proteins
T6 153-157 GeneOrGeneProduct denotes BMPs
T7 223-259 DiseaseOrPhenotypicFeature denotes ectopic cartilage and bone formation
T8 296-324 GeneOrGeneProduct denotes bone morphogenetic protein 4
T9 326-330 GeneOrGeneProduct denotes BMP4
T10 357-365 OrganismTaxon denotes patients
T11 375-412 DiseaseOrPhenotypicFeature denotes fibrodysplasia ossificans progressiva
T12 414-417 DiseaseOrPhenotypicFeature denotes FOP
T13 442-486 DiseaseOrPhenotypicFeature denotes axial and appendicular skeletal malformation
T14 503-527 DiseaseOrPhenotypicFeature denotes heterotopic ossification
T15 563-591 GeneOrGeneProduct denotes bone morphogenetic protein 5
T16 593-597 GeneOrGeneProduct denotes bmp5
T17 635-639 GeneOrGeneProduct denotes BMP5
T18 650-656 OrganismTaxon denotes murine
T19 657-675 DiseaseOrPhenotypicFeature denotes short ear syndrome
T20 736-764 DiseaseOrPhenotypicFeature denotes axial skeletal malformations
T21 818-823 OrganismTaxon denotes mouse
T22 828-831 DiseaseOrPhenotypicFeature denotes FOP
T23 848-871 DiseaseOrPhenotypicFeature denotes malformed external ears
T24 873-917 DiseaseOrPhenotypicFeature denotes multiple malformations of the axial skeleton
T25 935-959 DiseaseOrPhenotypicFeature denotes heterotopic ossification
T26 994-997 GeneOrGeneProduct denotes BMP
T27 1153-1157 GeneOrGeneProduct denotes BMP4
T28 1162-1166 GeneOrGeneProduct denotes BMP5
T29 1205-1212 OrganismTaxon denotes patient
T30 1237-1241 GeneOrGeneProduct denotes BMP2
T31 1312-1316 GeneOrGeneProduct denotes BMP4
T32 1321-1325 GeneOrGeneProduct denotes BMP5
T33 1363-1368 OrganismTaxon denotes human
T34 1369-1397 DiseaseOrPhenotypicFeature denotes axial skeletal abnormalities
T35 1423-1428 OrganismTaxon denotes mouse
T36 1433-1436 DiseaseOrPhenotypicFeature denotes FOP

biored-valid-deepseek-nr-g

Id Subject Object Predicate Lexical cue
T1 19-23 GeneOrGeneProduct denotes BMP4
T2 28-32 GeneOrGeneProduct denotes BMP5
T3 49-77 DiseaseOrPhenotypicFeature denotes axial skeletal malformations
T4 82-106 DiseaseOrPhenotypicFeature denotes heterotopic ossification
T5 124-151 GeneOrGeneProduct denotes Bone morphogenetic proteins
T6 153-157 GeneOrGeneProduct denotes BMPs
T7 296-324 GeneOrGeneProduct denotes bone morphogenetic protein 4
T8 326-330 GeneOrGeneProduct denotes BMP4
T9 375-412 DiseaseOrPhenotypicFeature denotes fibrodysplasia ossificans progressiva
T10 414-417 DiseaseOrPhenotypicFeature denotes FOP
T11 442-486 DiseaseOrPhenotypicFeature denotes axial and appendicular skeletal malformation
T12 503-527 DiseaseOrPhenotypicFeature denotes heterotopic ossification
T13 563-591 GeneOrGeneProduct denotes bone morphogenetic protein 5
T14 593-597 GeneOrGeneProduct denotes bmp5
T15 635-639 GeneOrGeneProduct denotes BMP5
T16 657-675 DiseaseOrPhenotypicFeature denotes short ear syndrome
T17 736-764 DiseaseOrPhenotypicFeature denotes axial skeletal malformations
T18 828-831 DiseaseOrPhenotypicFeature denotes FOP
T19 848-871 DiseaseOrPhenotypicFeature denotes malformed external ears
T20 873-917 DiseaseOrPhenotypicFeature denotes multiple malformations of the axial skeleton
T21 935-959 DiseaseOrPhenotypicFeature denotes heterotopic ossification
T22 994-997 GeneOrGeneProduct denotes BMP
T23 1153-1157 GeneOrGeneProduct denotes BMP4
T24 1162-1166 GeneOrGeneProduct denotes BMP5
T25 1237-1241 GeneOrGeneProduct denotes BMP2
T26 1363-1397 DiseaseOrPhenotypicFeature denotes human axial skeletal abnormalities

biored-valid-deepseek-r-ng

Id Subject Object Predicate Lexical cue
T1 19-23 GeneOrGeneProduct denotes BMP4
T2 28-32 GeneOrGeneProduct denotes BMP5
T3 49-77 DiseaseOrPhenotypicFeature denotes axial skeletal malformations
T4 82-106 DiseaseOrPhenotypicFeature denotes heterotopic ossification
T5 153-157 GeneOrGeneProduct denotes BMPs
T6 326-330 GeneOrGeneProduct denotes BMP4
T7 375-412 DiseaseOrPhenotypicFeature denotes fibrodysplasia ossificans progressiva
T8 414-417 DiseaseOrPhenotypicFeature denotes FOP
T9 442-486 DiseaseOrPhenotypicFeature denotes axial and appendicular skeletal malformation
T10 491-527 DiseaseOrPhenotypicFeature denotes progressive heterotopic ossification
T11 593-597 GeneOrGeneProduct denotes bmp5
T12 635-639 GeneOrGeneProduct denotes BMP5
T13 650-656 OrganismTaxon denotes murine
T14 657-675 DiseaseOrPhenotypicFeature denotes short ear syndrome
T15 736-764 DiseaseOrPhenotypicFeature denotes axial skeletal malformations
T16 808-823 DiseaseOrPhenotypicFeature denotes short ear mouse
T17 828-831 DiseaseOrPhenotypicFeature denotes FOP
T18 873-917 DiseaseOrPhenotypicFeature denotes multiple malformations of the axial skeleton
T19 1017-1040 CellLine denotes transformed lymphocytes
T20 1153-1157 GeneOrGeneProduct denotes BMP4
T21 1237-1241 GeneOrGeneProduct denotes BMP2
T22 1363-1368 OrganismTaxon denotes human
T23 1369-1397 DiseaseOrPhenotypicFeature denotes axial skeletal abnormalities

biored-valid-deepseek-r-g

Id Subject Object Predicate Lexical cue
T1 19-23 GeneOrGeneProduct denotes BMP4
T2 28-32 GeneOrGeneProduct denotes BMP5
T3 49-77 DiseaseOrPhenotypicFeature denotes axial skeletal malformations
T4 82-106 DiseaseOrPhenotypicFeature denotes heterotopic ossification
T5 124-151 GeneOrGeneProduct denotes Bone morphogenetic proteins
T6 153-157 GeneOrGeneProduct denotes BMPs
T7 296-324 GeneOrGeneProduct denotes bone morphogenetic protein 4
T8 326-330 GeneOrGeneProduct denotes BMP4
T9 375-412 DiseaseOrPhenotypicFeature denotes fibrodysplasia ossificans progressiva
T10 414-417 DiseaseOrPhenotypicFeature denotes FOP
T11 563-591 GeneOrGeneProduct denotes bone morphogenetic protein 5
T12 593-597 GeneOrGeneProduct denotes bmp5
T13 650-656 OrganismTaxon denotes murine
T14 657-675 DiseaseOrPhenotypicFeature denotes short ear syndrome
T15 808-817 DiseaseOrPhenotypicFeature denotes short ear
T16 818-823 OrganismTaxon denotes mouse
T17 828-831 DiseaseOrPhenotypicFeature denotes FOP
T18 848-871 DiseaseOrPhenotypicFeature denotes malformed external ears
T19 873-917 DiseaseOrPhenotypicFeature denotes multiple malformations of the axial skeleton
T20 923-959 DiseaseOrPhenotypicFeature denotes progressive heterotopic ossification
T21 994-997 GeneOrGeneProduct denotes BMP
T22 1153-1157 GeneOrGeneProduct denotes BMP4
T23 1162-1166 GeneOrGeneProduct denotes BMP5
T24 1237-1241 GeneOrGeneProduct denotes BMP2
T25 1363-1368 OrganismTaxon denotes human
T26 1369-1397 DiseaseOrPhenotypicFeature denotes axial skeletal abnormalities
T27 1413-1422 DiseaseOrPhenotypicFeature denotes short ear
T28 1423-1428 OrganismTaxon denotes mouse
T29 1433-1436 DiseaseOrPhenotypicFeature denotes FOP

biored-valid-gemini-nr-ng

Id Subject Object Predicate Lexical cue
T1 19-23 GeneOrGeneProduct denotes BMP4
T2 28-32 GeneOrGeneProduct denotes BMP5
T3 49-77 DiseaseOrPhenotypicFeature denotes axial skeletal malformations
T4 82-106 DiseaseOrPhenotypicFeature denotes heterotopic ossification
T5 124-151 GeneOrGeneProduct denotes Bone morphogenetic proteins
T6 153-157 GeneOrGeneProduct denotes BMPs
T7 296-324 GeneOrGeneProduct denotes bone morphogenetic protein 4
T8 326-330 GeneOrGeneProduct denotes BMP4
T9 375-412 DiseaseOrPhenotypicFeature denotes fibrodysplasia ossificans progressiva
T10 414-417 DiseaseOrPhenotypicFeature denotes FOP
T11 442-486 DiseaseOrPhenotypicFeature denotes axial and appendicular skeletal malformation
T12 491-527 DiseaseOrPhenotypicFeature denotes progressive heterotopic ossification
T13 563-591 GeneOrGeneProduct denotes bone morphogenetic protein 5
T14 593-597 GeneOrGeneProduct denotes bmp5
T15 635-639 GeneOrGeneProduct denotes BMP5
T16 650-675 DiseaseOrPhenotypicFeature denotes murine short ear syndrome
T17 694-714 DiseaseOrPhenotypicFeature denotes small malformed ears
T18 736-764 DiseaseOrPhenotypicFeature denotes axial skeletal malformations
T19 808-823 OrganismTaxon denotes short ear mouse
T20 828-831 DiseaseOrPhenotypicFeature denotes FOP
T21 848-871 DiseaseOrPhenotypicFeature denotes malformed external ears
T22 882-917 DiseaseOrPhenotypicFeature denotes malformations of the axial skeleton
T23 923-959 DiseaseOrPhenotypicFeature denotes progressive heterotopic ossification
T24 994-997 GeneOrGeneProduct denotes BMP
T25 998-1002 GeneOrGeneProduct denotes mRNA
T26 1153-1157 GeneOrGeneProduct denotes BMP4
T27 1162-1166 GeneOrGeneProduct denotes BMP5
T28 1167-1171 GeneOrGeneProduct denotes mRNA
T29 1237-1241 GeneOrGeneProduct denotes BMP2
T30 1363-1397 DiseaseOrPhenotypicFeature denotes human axial skeletal abnormalities
T31 1413-1428 OrganismTaxon denotes short ear mouse
T32 1433-1436 DiseaseOrPhenotypicFeature denotes FOP

biored-valid-gemini-r-ng

Id Subject Object Predicate Lexical cue
T1 19-23 GeneOrGeneProduct denotes BMP4
T2 28-32 GeneOrGeneProduct denotes BMP5
T3 49-77 DiseaseOrPhenotypicFeature denotes axial skeletal malformations
T4 82-106 DiseaseOrPhenotypicFeature denotes heterotopic ossification
T5 124-151 GeneOrGeneProduct denotes Bone morphogenetic proteins
T6 153-157 GeneOrGeneProduct denotes BMPs
T7 223-259 DiseaseOrPhenotypicFeature denotes ectopic cartilage and bone formation
T8 296-324 GeneOrGeneProduct denotes bone morphogenetic protein 4
T9 326-330 GeneOrGeneProduct denotes BMP4
T10 375-412 DiseaseOrPhenotypicFeature denotes fibrodysplasia ossificans progressiva
T11 414-417 DiseaseOrPhenotypicFeature denotes FOP
T12 422-438 DiseaseOrPhenotypicFeature denotes genetic disorder
T13 442-486 DiseaseOrPhenotypicFeature denotes axial and appendicular skeletal malformation
T14 491-527 DiseaseOrPhenotypicFeature denotes progressive heterotopic ossification
T15 563-591 GeneOrGeneProduct denotes bone morphogenetic protein 5
T16 593-597 GeneOrGeneProduct denotes bmp5
T17 635-639 GeneOrGeneProduct denotes BMP5
T18 650-675 DiseaseOrPhenotypicFeature denotes murine short ear syndrome
T19 694-714 DiseaseOrPhenotypicFeature denotes small malformed ears
T20 736-764 DiseaseOrPhenotypicFeature denotes axial skeletal malformations
T21 808-823 OrganismTaxon denotes short ear mouse
T22 828-831 DiseaseOrPhenotypicFeature denotes FOP
T23 848-871 DiseaseOrPhenotypicFeature denotes malformed external ears
T24 882-917 DiseaseOrPhenotypicFeature denotes malformations of the axial skeleton
T25 923-959 DiseaseOrPhenotypicFeature denotes progressive heterotopic ossification
T26 994-997 GeneOrGeneProduct denotes BMP
T27 998-1002 ChemicalEntity denotes mRNA
T28 1017-1040 CellLine denotes transformed lymphocytes
T29 1073-1080 GeneOrGeneProduct denotes protein
T30 1153-1157 GeneOrGeneProduct denotes BMP4
T31 1162-1166 GeneOrGeneProduct denotes BMP5
T32 1167-1171 ChemicalEntity denotes mRNA
T33 1176-1183 GeneOrGeneProduct denotes protein
T34 1237-1241 GeneOrGeneProduct denotes BMP2
T35 1242-1246 ChemicalEntity denotes mRNA
T36 1312-1316 GeneOrGeneProduct denotes BMP4
T37 1321-1325 GeneOrGeneProduct denotes BMP5
T38 1363-1368 OrganismTaxon denotes human
T39 1369-1397 DiseaseOrPhenotypicFeature denotes axial skeletal abnormalities
T40 1413-1428 OrganismTaxon denotes short ear mouse
T41 1433-1436 DiseaseOrPhenotypicFeature denotes FOP

biored-valid-gemini-r-g

Id Subject Object Predicate Lexical cue
T1 19-23 GeneOrGeneProduct denotes BMP4
T2 28-32 GeneOrGeneProduct denotes BMP5
T3 49-77 DiseaseOrPhenotypicFeature denotes axial skeletal malformations
T4 82-106 DiseaseOrPhenotypicFeature denotes heterotopic ossification
T5 124-151 GeneOrGeneProduct denotes Bone morphogenetic proteins
T6 153-157 GeneOrGeneProduct denotes BMPs
T7 223-259 DiseaseOrPhenotypicFeature denotes ectopic cartilage and bone formation
T8 296-324 GeneOrGeneProduct denotes bone morphogenetic protein 4
T9 326-330 GeneOrGeneProduct denotes BMP4
T10 375-412 DiseaseOrPhenotypicFeature denotes fibrodysplasia ossificans progressiva
T11 414-417 DiseaseOrPhenotypicFeature denotes FOP
T12 442-486 DiseaseOrPhenotypicFeature denotes axial and appendicular skeletal malformation
T13 491-527 DiseaseOrPhenotypicFeature denotes progressive heterotopic ossification
T14 563-591 GeneOrGeneProduct denotes bone morphogenetic protein 5
T15 593-597 GeneOrGeneProduct denotes bmp5
T16 635-639 GeneOrGeneProduct denotes BMP5
T17 650-656 OrganismTaxon denotes murine
T18 657-675 DiseaseOrPhenotypicFeature denotes short ear syndrome
T19 694-714 DiseaseOrPhenotypicFeature denotes small malformed ears
T20 736-764 DiseaseOrPhenotypicFeature denotes axial skeletal malformations
T21 818-823 OrganismTaxon denotes mouse
T22 828-831 DiseaseOrPhenotypicFeature denotes FOP
T23 848-871 DiseaseOrPhenotypicFeature denotes malformed external ears
T24 873-917 DiseaseOrPhenotypicFeature denotes multiple malformations of the axial skeleton
T25 923-959 DiseaseOrPhenotypicFeature denotes progressive heterotopic ossification
T26 994-997 GeneOrGeneProduct denotes BMP
T27 1153-1157 GeneOrGeneProduct denotes BMP4
T28 1162-1166 GeneOrGeneProduct denotes BMP5
T29 1237-1241 GeneOrGeneProduct denotes BMP2
T30 1312-1316 GeneOrGeneProduct denotes BMP4
T31 1321-1325 GeneOrGeneProduct denotes BMP5
T32 1363-1368 OrganismTaxon denotes human
T33 1369-1397 DiseaseOrPhenotypicFeature denotes axial skeletal abnormalities
T34 1423-1428 OrganismTaxon denotes mouse
T35 1433-1436 DiseaseOrPhenotypicFeature denotes FOP

biored-valid-gpt-nr-ng

Id Subject Object Predicate Lexical cue
T1 19-23 GeneOrGeneProduct denotes BMP4
T2 28-32 GeneOrGeneProduct denotes BMP5
T3 49-77 DiseaseOrPhenotypicFeature denotes axial skeletal malformations
T4 82-106 DiseaseOrPhenotypicFeature denotes heterotopic ossification
T5 124-151 GeneOrGeneProduct denotes Bone morphogenetic proteins
T6 153-157 GeneOrGeneProduct denotes BMPs
T7 223-259 DiseaseOrPhenotypicFeature denotes ectopic cartilage and bone formation
T8 296-324 GeneOrGeneProduct denotes bone morphogenetic protein 4
T9 326-330 GeneOrGeneProduct denotes BMP4
T10 375-412 DiseaseOrPhenotypicFeature denotes fibrodysplasia ossificans progressiva
T11 414-417 DiseaseOrPhenotypicFeature denotes FOP
T12 491-527 DiseaseOrPhenotypicFeature denotes progressive heterotopic ossification
T13 529-555 SequenceVariant denotes Loss of function mutations
T14 563-591 GeneOrGeneProduct denotes bone morphogenetic protein 5
T15 593-597 GeneOrGeneProduct denotes bmp5
T16 635-639 GeneOrGeneProduct denotes BMP5
T17 650-656 OrganismTaxon denotes murine
T18 657-675 DiseaseOrPhenotypicFeature denotes short ear syndrome
T19 694-714 DiseaseOrPhenotypicFeature denotes small malformed ears
T20 736-764 DiseaseOrPhenotypicFeature denotes axial skeletal malformations
T21 818-823 OrganismTaxon denotes mouse
T22 828-831 DiseaseOrPhenotypicFeature denotes FOP
T23 848-871 DiseaseOrPhenotypicFeature denotes malformed external ears
T24 882-917 DiseaseOrPhenotypicFeature denotes malformations of the axial skeleton
T25 923-959 DiseaseOrPhenotypicFeature denotes progressive heterotopic ossification
T26 994-997 GeneOrGeneProduct denotes BMP
T27 1153-1157 GeneOrGeneProduct denotes BMP4
T28 1162-1166 GeneOrGeneProduct denotes BMP5
T29 1237-1241 GeneOrGeneProduct denotes BMP2
T30 1312-1316 GeneOrGeneProduct denotes BMP4
T31 1321-1325 GeneOrGeneProduct denotes BMP5
T32 1363-1368 OrganismTaxon denotes human
T33 1369-1397 DiseaseOrPhenotypicFeature denotes axial skeletal abnormalities
T34 1423-1428 OrganismTaxon denotes mouse
T35 1433-1436 DiseaseOrPhenotypicFeature denotes FOP

biored-valid-gpt-nr-g

Id Subject Object Predicate Lexical cue
T1 19-23 GeneOrGeneProduct denotes BMP4
T2 28-32 GeneOrGeneProduct denotes BMP5
T3 49-77 DiseaseOrPhenotypicFeature denotes axial skeletal malformations
T4 82-106 DiseaseOrPhenotypicFeature denotes heterotopic ossification
T5 124-151 GeneOrGeneProduct denotes Bone morphogenetic proteins
T6 153-157 GeneOrGeneProduct denotes BMPs
T7 223-259 DiseaseOrPhenotypicFeature denotes ectopic cartilage and bone formation
T8 296-324 GeneOrGeneProduct denotes bone morphogenetic protein 4
T9 326-330 GeneOrGeneProduct denotes BMP4
T10 375-412 DiseaseOrPhenotypicFeature denotes fibrodysplasia ossificans progressiva
T11 414-417 DiseaseOrPhenotypicFeature denotes FOP
T12 442-486 DiseaseOrPhenotypicFeature denotes axial and appendicular skeletal malformation
T13 491-527 DiseaseOrPhenotypicFeature denotes progressive heterotopic ossification
T14 563-591 GeneOrGeneProduct denotes bone morphogenetic protein 5
T15 593-597 GeneOrGeneProduct denotes bmp5
T16 635-639 GeneOrGeneProduct denotes BMP5
T17 650-656 OrganismTaxon denotes murine
T18 657-675 DiseaseOrPhenotypicFeature denotes short ear syndrome
T19 694-714 DiseaseOrPhenotypicFeature denotes small malformed ears
T20 736-764 DiseaseOrPhenotypicFeature denotes axial skeletal malformations
T21 818-823 OrganismTaxon denotes mouse
T22 828-831 DiseaseOrPhenotypicFeature denotes FOP
T23 848-871 DiseaseOrPhenotypicFeature denotes malformed external ears
T24 882-917 DiseaseOrPhenotypicFeature denotes malformations of the axial skeleton
T25 923-959 DiseaseOrPhenotypicFeature denotes progressive heterotopic ossification
T26 994-997 GeneOrGeneProduct denotes BMP
T27 1153-1157 GeneOrGeneProduct denotes BMP4
T28 1162-1166 GeneOrGeneProduct denotes BMP5
T29 1237-1241 GeneOrGeneProduct denotes BMP2
T30 1312-1316 GeneOrGeneProduct denotes BMP4
T31 1321-1325 GeneOrGeneProduct denotes BMP5
T32 1363-1368 OrganismTaxon denotes human
T33 1369-1397 DiseaseOrPhenotypicFeature denotes axial skeletal abnormalities
T34 1423-1428 OrganismTaxon denotes mouse

biored-valid-gpt-r-g

Id Subject Object Predicate Lexical cue
T1 19-32 GeneOrGeneProduct denotes BMP4 and BMP5
T2 49-77 DiseaseOrPhenotypicFeature denotes axial skeletal malformations
T3 82-106 DiseaseOrPhenotypicFeature denotes heterotopic ossification
T4 124-151 GeneOrGeneProduct denotes Bone morphogenetic proteins
T5 153-157 GeneOrGeneProduct denotes BMPs
T6 296-324 GeneOrGeneProduct denotes bone morphogenetic protein 4
T7 326-330 GeneOrGeneProduct denotes BMP4
T8 375-412 DiseaseOrPhenotypicFeature denotes fibrodysplasia ossificans progressiva
T9 414-417 DiseaseOrPhenotypicFeature denotes FOP
T10 465-486 DiseaseOrPhenotypicFeature denotes skeletal malformation
T11 503-527 DiseaseOrPhenotypicFeature denotes heterotopic ossification
T12 563-591 GeneOrGeneProduct denotes bone morphogenetic protein 5
T13 593-597 GeneOrGeneProduct denotes bmp5
T14 635-639 GeneOrGeneProduct denotes BMP5
T15 650-656 OrganismTaxon denotes murine
T16 657-675 DiseaseOrPhenotypicFeature denotes short ear syndrome
T17 700-714 DiseaseOrPhenotypicFeature denotes malformed ears
T18 736-764 DiseaseOrPhenotypicFeature denotes axial skeletal malformations
T19 818-823 OrganismTaxon denotes mouse
T20 828-831 DiseaseOrPhenotypicFeature denotes FOP
T21 848-871 DiseaseOrPhenotypicFeature denotes malformed external ears
T22 882-917 DiseaseOrPhenotypicFeature denotes malformations of the axial skeleton
T23 935-959 DiseaseOrPhenotypicFeature denotes heterotopic ossification
T24 994-1002 GeneOrGeneProduct denotes BMP mRNA
T25 1153-1166 GeneOrGeneProduct denotes BMP4 and BMP5
T26 1237-1246 GeneOrGeneProduct denotes BMP2 mRNA
T27 1312-1325 GeneOrGeneProduct denotes BMP4 and BMP5
T28 1363-1368 OrganismTaxon denotes human
T29 1369-1397 DiseaseOrPhenotypicFeature denotes axial skeletal abnormalities
T30 1423-1428 OrganismTaxon denotes mouse
T31 1433-1436 DiseaseOrPhenotypicFeature denotes FOP

biored-valid-gpt-r-ng

Id Subject Object Predicate Lexical cue
T1 19-23 GeneOrGeneProduct denotes BMP4
T2 28-32 GeneOrGeneProduct denotes BMP5
T3 49-77 DiseaseOrPhenotypicFeature denotes axial skeletal malformations
T4 82-106 DiseaseOrPhenotypicFeature denotes heterotopic ossification
T5 124-151 GeneOrGeneProduct denotes Bone morphogenetic proteins
T6 153-157 GeneOrGeneProduct denotes BMPs
T7 223-259 DiseaseOrPhenotypicFeature denotes ectopic cartilage and bone formation
T8 296-324 GeneOrGeneProduct denotes bone morphogenetic protein 4
T9 326-330 GeneOrGeneProduct denotes BMP4
T10 375-412 DiseaseOrPhenotypicFeature denotes fibrodysplasia ossificans progressiva
T11 414-417 DiseaseOrPhenotypicFeature denotes FOP
T12 442-486 DiseaseOrPhenotypicFeature denotes axial and appendicular skeletal malformation
T13 491-527 DiseaseOrPhenotypicFeature denotes progressive heterotopic ossification
T14 529-555 SequenceVariant denotes Loss of function mutations
T15 563-591 GeneOrGeneProduct denotes bone morphogenetic protein 5
T16 593-597 GeneOrGeneProduct denotes bmp5
T17 635-639 GeneOrGeneProduct denotes BMP5
T18 650-656 OrganismTaxon denotes murine
T19 657-675 DiseaseOrPhenotypicFeature denotes short ear syndrome
T20 694-714 DiseaseOrPhenotypicFeature denotes small malformed ears
T21 736-764 DiseaseOrPhenotypicFeature denotes axial skeletal malformations
T22 818-823 OrganismTaxon denotes mouse
T23 828-831 DiseaseOrPhenotypicFeature denotes FOP
T24 848-871 DiseaseOrPhenotypicFeature denotes malformed external ears
T25 882-917 DiseaseOrPhenotypicFeature denotes malformations of the axial skeleton
T26 923-959 DiseaseOrPhenotypicFeature denotes progressive heterotopic ossification
T27 994-997 GeneOrGeneProduct denotes BMP
T28 1153-1157 GeneOrGeneProduct denotes BMP4
T29 1162-1166 GeneOrGeneProduct denotes BMP5
T30 1237-1241 GeneOrGeneProduct denotes BMP2
T31 1312-1316 GeneOrGeneProduct denotes BMP4
T32 1321-1325 GeneOrGeneProduct denotes BMP5
T33 1363-1368 OrganismTaxon denotes human
T34 1369-1397 DiseaseOrPhenotypicFeature denotes axial skeletal abnormalities
T35 1423-1428 OrganismTaxon denotes mouse
T36 1433-1436 DiseaseOrPhenotypicFeature denotes FOP

biored-valid-gemini-nr-g

Id Subject Object Predicate Lexical cue
T1 19-23 GeneOrGeneProduct denotes BMP4
T2 28-32 GeneOrGeneProduct denotes BMP5
T3 49-77 DiseaseOrPhenotypicFeature denotes axial skeletal malformations
T4 82-106 DiseaseOrPhenotypicFeature denotes heterotopic ossification
T5 124-151 GeneOrGeneProduct denotes Bone morphogenetic proteins
T6 153-157 GeneOrGeneProduct denotes BMPs
T7 231-240 DiseaseOrPhenotypicFeature denotes cartilage
T8 245-259 DiseaseOrPhenotypicFeature denotes bone formation
T9 296-324 GeneOrGeneProduct denotes bone morphogenetic protein 4
T10 326-330 GeneOrGeneProduct denotes BMP4
T11 375-412 DiseaseOrPhenotypicFeature denotes fibrodysplasia ossificans progressiva
T12 414-417 DiseaseOrPhenotypicFeature denotes FOP
T13 442-486 DiseaseOrPhenotypicFeature denotes axial and appendicular skeletal malformation
T14 491-527 DiseaseOrPhenotypicFeature denotes progressive heterotopic ossification
T15 563-591 GeneOrGeneProduct denotes bone morphogenetic protein 5
T16 593-597 GeneOrGeneProduct denotes bmp5
T17 635-639 GeneOrGeneProduct denotes BMP5
T18 650-675 DiseaseOrPhenotypicFeature denotes murine short ear syndrome
T19 694-714 DiseaseOrPhenotypicFeature denotes small malformed ears
T20 736-764 DiseaseOrPhenotypicFeature denotes axial skeletal malformations
T21 818-823 OrganismTaxon denotes mouse
T22 828-831 DiseaseOrPhenotypicFeature denotes FOP
T23 848-871 DiseaseOrPhenotypicFeature denotes malformed external ears
T24 882-917 DiseaseOrPhenotypicFeature denotes malformations of the axial skeleton
T25 923-959 DiseaseOrPhenotypicFeature denotes progressive heterotopic ossification
T26 994-997 GeneOrGeneProduct denotes BMP
T27 998-1002 GeneOrGeneProduct denotes mRNA
T28 1029-1040 CellLine denotes lymphocytes
T29 1153-1157 GeneOrGeneProduct denotes BMP4
T30 1162-1166 GeneOrGeneProduct denotes BMP5
T31 1167-1171 GeneOrGeneProduct denotes mRNA
T32 1237-1241 GeneOrGeneProduct denotes BMP2
T33 1363-1397 DiseaseOrPhenotypicFeature denotes human axial skeletal abnormalities
T34 1423-1428 OrganismTaxon denotes mouse
T35 1433-1436 DiseaseOrPhenotypicFeature denotes FOP

biored-valid-gpt-r-m

Id Subject Object Predicate Lexical cue
T1 19-23 GeneOrGeneProduct denotes BMP4
T2 28-32 GeneOrGeneProduct denotes BMP5
T3 38-43 OrganismTaxon denotes child
T4 49-77 DiseaseOrPhenotypicFeature denotes axial skeletal malformations
T5 82-106 DiseaseOrPhenotypicFeature denotes heterotopic ossification
T6 124-151 GeneOrGeneProduct denotes Bone morphogenetic proteins
T7 153-157 GeneOrGeneProduct denotes BMPs
T8 223-259 DiseaseOrPhenotypicFeature denotes ectopic cartilage and bone formation
T9 296-324 GeneOrGeneProduct denotes bone morphogenetic protein 4
T10 326-330 GeneOrGeneProduct denotes BMP4
T11 357-365 OrganismTaxon denotes patients
T12 375-412 DiseaseOrPhenotypicFeature denotes fibrodysplasia ossificans progressiva
T13 414-417 DiseaseOrPhenotypicFeature denotes FOP
T14 442-486 DiseaseOrPhenotypicFeature denotes axial and appendicular skeletal malformation
T15 491-527 DiseaseOrPhenotypicFeature denotes progressive heterotopic ossification
T16 529-555 SequenceVariant denotes Loss of function mutations
T17 563-591 GeneOrGeneProduct denotes bone morphogenetic protein 5
T18 593-597 GeneOrGeneProduct denotes bmp5
T19 635-639 GeneOrGeneProduct denotes BMP5
T20 650-656 OrganismTaxon denotes murine
T21 657-675 DiseaseOrPhenotypicFeature denotes short ear syndrome
T22 694-714 DiseaseOrPhenotypicFeature denotes small malformed ears
T23 736-764 DiseaseOrPhenotypicFeature denotes axial skeletal malformations
T24 818-823 OrganismTaxon denotes mouse
T25 828-831 DiseaseOrPhenotypicFeature denotes FOP
T26 837-842 OrganismTaxon denotes child
T27 848-871 DiseaseOrPhenotypicFeature denotes malformed external ears
T28 882-917 DiseaseOrPhenotypicFeature denotes malformations of the axial skeleton
T29 923-959 DiseaseOrPhenotypicFeature denotes progressive heterotopic ossification
T30 994-997 GeneOrGeneProduct denotes BMP
T31 1153-1157 GeneOrGeneProduct denotes BMP4
T32 1162-1166 GeneOrGeneProduct denotes BMP5
T33 1205-1214 OrganismTaxon denotes patient's
T34 1237-1241 GeneOrGeneProduct denotes BMP2
T35 1312-1316 GeneOrGeneProduct denotes BMP4
T36 1321-1325 GeneOrGeneProduct denotes BMP5
T37 1363-1368 OrganismTaxon denotes human
T38 1369-1397 DiseaseOrPhenotypicFeature denotes axial skeletal abnormalities
T39 1423-1428 OrganismTaxon denotes mouse
T40 1433-1436 DiseaseOrPhenotypicFeature denotes FOP

biored-valid-gemini-r-m

Id Subject Object Predicate Lexical cue
T1 19-23 GeneOrGeneProduct denotes BMP4
T2 28-32 GeneOrGeneProduct denotes BMP5
T3 38-43 OrganismTaxon denotes child
T4 49-77 DiseaseOrPhenotypicFeature denotes axial skeletal malformations
T5 82-106 DiseaseOrPhenotypicFeature denotes heterotopic ossification
T6 124-151 GeneOrGeneProduct denotes Bone morphogenetic proteins
T7 153-157 GeneOrGeneProduct denotes BMPs
T8 223-259 DiseaseOrPhenotypicFeature denotes ectopic cartilage and bone formation
T9 296-324 GeneOrGeneProduct denotes bone morphogenetic protein 4
T10 326-330 GeneOrGeneProduct denotes BMP4
T11 357-365 OrganismTaxon denotes patients
T12 375-412 DiseaseOrPhenotypicFeature denotes fibrodysplasia ossificans progressiva
T13 414-417 DiseaseOrPhenotypicFeature denotes FOP
T14 442-486 DiseaseOrPhenotypicFeature denotes axial and appendicular skeletal malformation
T15 491-527 DiseaseOrPhenotypicFeature denotes progressive heterotopic ossification
T16 563-591 GeneOrGeneProduct denotes bone morphogenetic protein 5
T17 593-597 GeneOrGeneProduct denotes bmp5
T18 635-639 GeneOrGeneProduct denotes BMP5
T19 650-656 OrganismTaxon denotes murine
T20 657-675 DiseaseOrPhenotypicFeature denotes short ear syndrome
T21 694-714 DiseaseOrPhenotypicFeature denotes small malformed ears
T22 736-764 DiseaseOrPhenotypicFeature denotes axial skeletal malformations
T23 808-817 DiseaseOrPhenotypicFeature denotes short ear
T24 818-823 OrganismTaxon denotes mouse
T25 828-831 DiseaseOrPhenotypicFeature denotes FOP
T26 837-842 OrganismTaxon denotes child
T27 848-871 DiseaseOrPhenotypicFeature denotes malformed external ears
T28 873-917 DiseaseOrPhenotypicFeature denotes multiple malformations of the axial skeleton
T29 923-959 DiseaseOrPhenotypicFeature denotes progressive heterotopic ossification
T30 994-997 GeneOrGeneProduct denotes BMP
T31 1017-1040 CellLine denotes transformed lymphocytes
T32 1153-1157 GeneOrGeneProduct denotes BMP4
T33 1162-1166 GeneOrGeneProduct denotes BMP5
T34 1205-1214 OrganismTaxon denotes patient's
T35 1237-1241 GeneOrGeneProduct denotes BMP2
T36 1312-1316 GeneOrGeneProduct denotes BMP4
T37 1321-1325 GeneOrGeneProduct denotes BMP5
T38 1363-1368 OrganismTaxon denotes human
T39 1369-1397 DiseaseOrPhenotypicFeature denotes axial skeletal abnormalities
T40 1413-1422 DiseaseOrPhenotypicFeature denotes short ear
T41 1423-1428 OrganismTaxon denotes mouse
T42 1433-1436 DiseaseOrPhenotypicFeature denotes FOP

biored-valid-deepseek-r-m

Id Subject Object Predicate Lexical cue
T1 19-23 GeneOrGeneProduct denotes BMP4
T2 28-32 GeneOrGeneProduct denotes BMP5
T3 49-77 DiseaseOrPhenotypicFeature denotes axial skeletal malformations
T4 82-106 DiseaseOrPhenotypicFeature denotes heterotopic ossification
T5 124-151 GeneOrGeneProduct denotes Bone morphogenetic proteins
T6 153-157 GeneOrGeneProduct denotes BMPs
T7 296-324 GeneOrGeneProduct denotes bone morphogenetic protein 4
T8 326-330 GeneOrGeneProduct denotes BMP4
T9 375-412 DiseaseOrPhenotypicFeature denotes fibrodysplasia ossificans progressiva
T10 414-417 DiseaseOrPhenotypicFeature denotes FOP
T11 491-527 DiseaseOrPhenotypicFeature denotes progressive heterotopic ossification
T12 563-591 GeneOrGeneProduct denotes bone morphogenetic protein 5
T13 593-597 GeneOrGeneProduct denotes bmp5
T14 635-638 GeneOrGeneProduct denotes BMP
T15 650-656 OrganismTaxon denotes murine
T16 657-675 DiseaseOrPhenotypicFeature denotes short ear syndrome
T17 818-823 OrganismTaxon denotes mouse
T18 828-831 DiseaseOrPhenotypicFeature denotes FOP
T19 848-871 DiseaseOrPhenotypicFeature denotes malformed external ears
T20 873-917 DiseaseOrPhenotypicFeature denotes multiple malformations of the axial skeleton
T21 1237-1241 GeneOrGeneProduct denotes BMP2
T22 1363-1368 OrganismTaxon denotes human
T23 1369-1397 DiseaseOrPhenotypicFeature denotes axial skeletal abnormalities