PubMed:17172260 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PubMed/sourceid/17172260","sourcedb":"PubMed","sourceid":"17172260","source_url":"http://www.ncbi.nlm.nih.gov/pubmed/17172260","text":"Crystal structure of mammalian alpha1,6-fucosyltransferase, FUT8.\nMammalian alpha1,6-fucosyltransferase (FUT8) catalyses the transfer of a fucose residue from a donor substrate, guanosine 5'-diphosphate-beta-L-fucose to the reducing terminal N-acetylglucosamine (GlcNAc) of the core structure of an asparagine-linked oligosaccharide. Alpha1,6-fucosylation, also referred to as core fucosylation, plays an essential role in various pathophysiological events. Our group reported that FUT8 null mice showed severe growth retardation and emphysema-like lung-destruction as a result of the dysfunction of epidermal growth factor and transforming growth factor-beta receptors. To elucidate the molecular basis of FUT8 with respect to pathophysiology, the crystal structure of human FUT8 was determined at 2.6 A resolution. The overall structure of FUT8 was found to consist of three domains: an N-terminal coiled-coil domain, a catalytic domain, and a C-terminal SH3 domain. The catalytic region appears to be similar to GT-B glycosyltransferases rather than GT-A. The C-terminal part of the catalytic domain of FUT8 includes a Rossmann fold with three regions that are conserved in alpha1,6-, alpha1,2-, and protein O-fucosyltransferases. The SH3 domain of FUT8 is similar to other SH3 domain-containing proteins, although the significance of this domain remains to be elucidated. The present findings of FUT8 suggest that the conserved residues in the three conserved regions participate in the Rossmann fold and act as the donor binding site, or in catalysis, thus playing key roles in the fucose-transferring reaction.","tracks":[{"project":"Glycan-Motif","denotations":[{"id":"T1","span":{"begin":139,"end":145},"obj":"https://glytoucan.org/Structures/Glycans/G82576YO"},{"id":"T2","span":{"begin":210,"end":216},"obj":"https://glytoucan.org/Structures/Glycans/G82576YO"},{"id":"T3","span":{"begin":242,"end":261},"obj":"https://glytoucan.org/Structures/Glycans/G64581RP"},{"id":"T4","span":{"begin":1587,"end":1593},"obj":"https://glytoucan.org/Structures/Glycans/G82576YO"}],"attributes":[{"subj":"T1","pred":"source","obj":"Glycan-Motif"},{"subj":"T2","pred":"source","obj":"Glycan-Motif"},{"subj":"T3","pred":"source","obj":"Glycan-Motif"},{"subj":"T4","pred":"source","obj":"Glycan-Motif"}]},{"project":"GlyCosmos6-Glycan-Motif-Image","denotations":[{"id":"T1","span":{"begin":139,"end":145},"obj":"Glycan_Motif"},{"id":"T2","span":{"begin":210,"end":216},"obj":"Glycan_Motif"},{"id":"T3","span":{"begin":242,"end":261},"obj":"Glycan_Motif"},{"id":"T4","span":{"begin":1587,"end":1593},"obj":"Glycan_Motif"}],"attributes":[{"id":"A1","pred":"image","subj":"T1","obj":"https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G82576YO"},{"id":"A2","pred":"image","subj":"T2","obj":"https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G82576YO"},{"id":"A3","pred":"image","subj":"T3","obj":"https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G64581RP"},{"id":"A4","pred":"image","subj":"T4","obj":"https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G82576YO"},{"subj":"T1","pred":"source","obj":"GlyCosmos6-Glycan-Motif-Image"},{"subj":"T2","pred":"source","obj":"GlyCosmos6-Glycan-Motif-Image"},{"subj":"T3","pred":"source","obj":"GlyCosmos6-Glycan-Motif-Image"},{"subj":"T4","pred":"source","obj":"GlyCosmos6-Glycan-Motif-Image"}]},{"project":"sentences","denotations":[{"id":"TextSentencer_T1","span":{"begin":0,"end":65},"obj":"Sentence"},{"id":"TextSentencer_T2","span":{"begin":66,"end":333},"obj":"Sentence"},{"id":"TextSentencer_T3","span":{"begin":334,"end":457},"obj":"Sentence"},{"id":"TextSentencer_T4","span":{"begin":458,"end":670},"obj":"Sentence"},{"id":"TextSentencer_T5","span":{"begin":671,"end":816},"obj":"Sentence"},{"id":"TextSentencer_T6","span":{"begin":817,"end":968},"obj":"Sentence"},{"id":"TextSentencer_T7","span":{"begin":969,"end":1058},"obj":"Sentence"},{"id":"TextSentencer_T8","span":{"begin":1059,"end":1233},"obj":"Sentence"},{"id":"TextSentencer_T9","span":{"begin":1234,"end":1375},"obj":"Sentence"},{"id":"TextSentencer_T10","span":{"begin":1376,"end":1616},"obj":"Sentence"},{"id":"T1","span":{"begin":0,"end":65},"obj":"Sentence"},{"id":"T2","span":{"begin":66,"end":333},"obj":"Sentence"},{"id":"T3","span":{"begin":334,"end":457},"obj":"Sentence"},{"id":"T4","span":{"begin":458,"end":670},"obj":"Sentence"},{"id":"T5","span":{"begin":671,"end":816},"obj":"Sentence"},{"id":"T6","span":{"begin":817,"end":968},"obj":"Sentence"},{"id":"T7","span":{"begin":969,"end":1233},"obj":"Sentence"},{"id":"T8","span":{"begin":1234,"end":1375},"obj":"Sentence"},{"id":"T9","span":{"begin":1376,"end":1616},"obj":"Sentence"},{"id":"T1","span":{"begin":0,"end":65},"obj":"Sentence"},{"id":"T2","span":{"begin":66,"end":333},"obj":"Sentence"},{"id":"T3","span":{"begin":334,"end":457},"obj":"Sentence"},{"id":"T4","span":{"begin":458,"end":670},"obj":"Sentence"},{"id":"T5","span":{"begin":671,"end":816},"obj":"Sentence"},{"id":"T6","span":{"begin":817,"end":968},"obj":"Sentence"},{"id":"T7","span":{"begin":969,"end":1058},"obj":"Sentence"},{"id":"T8","span":{"begin":1059,"end":1233},"obj":"Sentence"},{"id":"T9","span":{"begin":1234,"end":1375},"obj":"Sentence"},{"id":"T10","span":{"begin":1376,"end":1616},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"TextSentencer_T1","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T2","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T3","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T4","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T5","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T6","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T7","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T8","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T9","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T10","pred":"source","obj":"sentences"},{"subj":"T1","pred":"source","obj":"sentences"},{"subj":"T2","pred":"source","obj":"sentences"},{"subj":"T3","pred":"source","obj":"sentences"},{"subj":"T4","pred":"source","obj":"sentences"},{"subj":"T5","pred":"source","obj":"sentences"},{"subj":"T6","pred":"source","obj":"sentences"},{"subj":"T7","pred":"source","obj":"sentences"},{"subj":"T8","pred":"source","obj":"sentences"},{"subj":"T9","pred":"source","obj":"sentences"},{"subj":"T1","pred":"source","obj":"sentences"},{"subj":"T2","pred":"source","obj":"sentences"},{"subj":"T3","pred":"source","obj":"sentences"},{"subj":"T4","pred":"source","obj":"sentences"},{"subj":"T5","pred":"source","obj":"sentences"},{"subj":"T6","pred":"source","obj":"sentences"},{"subj":"T7","pred":"source","obj":"sentences"},{"subj":"T8","pred":"source","obj":"sentences"},{"subj":"T9","pred":"source","obj":"sentences"},{"subj":"T10","pred":"source","obj":"sentences"}]},{"project":"GlyCosmos6-Glycan-Motif-Structure","denotations":[{"id":"T1","span":{"begin":139,"end":145},"obj":"https://glytoucan.org/Structures/Glycans/G82576YO"},{"id":"T2","span":{"begin":210,"end":216},"obj":"https://glytoucan.org/Structures/Glycans/G82576YO"},{"id":"T3","span":{"begin":242,"end":261},"obj":"https://glytoucan.org/Structures/Glycans/G64581RP"},{"id":"T4","span":{"begin":1587,"end":1593},"obj":"https://glytoucan.org/Structures/Glycans/G82576YO"}],"attributes":[{"subj":"T1","pred":"source","obj":"GlyCosmos6-Glycan-Motif-Structure"},{"subj":"T2","pred":"source","obj":"GlyCosmos6-Glycan-Motif-Structure"},{"subj":"T3","pred":"source","obj":"GlyCosmos6-Glycan-Motif-Structure"},{"subj":"T4","pred":"source","obj":"GlyCosmos6-Glycan-Motif-Structure"}]},{"project":"Glycosmos6-MAT","denotations":[{"id":"T1","span":{"begin":549,"end":553},"obj":"http://purl.obolibrary.org/obo/MAT_0000135"}],"attributes":[{"subj":"T1","pred":"source","obj":"Glycosmos6-MAT"}]},{"project":"DisGeNET","denotations":[{"id":"T0","span":{"begin":482,"end":486},"obj":"gene:2530"},{"id":"T1","span":{"begin":534,"end":543},"obj":"disease:C0034067"},{"id":"T2","span":{"begin":600,"end":623},"obj":"gene:1950"},{"id":"T3","span":{"begin":534,"end":543},"obj":"disease:C0034067"}],"relations":[{"id":"R1","pred":"associated_with","subj":"T0","obj":"T1"},{"id":"R2","pred":"associated_with","subj":"T2","obj":"T3"}],"namespaces":[{"prefix":"gene","uri":"http://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"disease","uri":"http://purl.bioontology.org/ontology/MEDLINEPLUS/"}],"attributes":[{"subj":"T0","pred":"source","obj":"DisGeNET"},{"subj":"T1","pred":"source","obj":"DisGeNET"},{"subj":"T2","pred":"source","obj":"DisGeNET"},{"subj":"T3","pred":"source","obj":"DisGeNET"}]},{"project":"PubmedHPO","denotations":[{"id":"T1","span":{"begin":511,"end":529},"obj":"HP_0001510"},{"id":"T2","span":{"begin":534,"end":543},"obj":"HP_0002097"}],"attributes":[{"subj":"T1","pred":"source","obj":"PubmedHPO"},{"subj":"T2","pred":"source","obj":"PubmedHPO"}]},{"project":"ICD10","denotations":[{"id":"T1","span":{"begin":534,"end":543},"obj":"http://purl.bioontology.org/ontology/ICD10/J43.9"},{"id":"T2","span":{"begin":534,"end":543},"obj":"http://purl.bioontology.org/ontology/ICD10/J43"}],"attributes":[{"subj":"T1","pred":"source","obj":"ICD10"},{"subj":"T2","pred":"source","obj":"ICD10"}]},{"project":"uniprot-human","denotations":[{"id":"T1","span":{"begin":60,"end":64},"obj":"http://www.uniprot.org/uniprot/Q9BYC5"},{"id":"T2","span":{"begin":105,"end":109},"obj":"http://www.uniprot.org/uniprot/Q9BYC5"},{"id":"T3","span":{"begin":482,"end":486},"obj":"http://www.uniprot.org/uniprot/Q9BYC5"},{"id":"T4","span":{"begin":707,"end":711},"obj":"http://www.uniprot.org/uniprot/Q9BYC5"},{"id":"T5","span":{"begin":776,"end":780},"obj":"http://www.uniprot.org/uniprot/Q9BYC5"},{"id":"T6","span":{"begin":842,"end":846},"obj":"http://www.uniprot.org/uniprot/Q9BYC5"},{"id":"T7","span":{"begin":1106,"end":1110},"obj":"http://www.uniprot.org/uniprot/Q9BYC5"},{"id":"T8","span":{"begin":1252,"end":1256},"obj":"http://www.uniprot.org/uniprot/Q9BYC5"},{"id":"T9","span":{"begin":1400,"end":1404},"obj":"http://www.uniprot.org/uniprot/Q9BYC5"},{"id":"T10","span":{"begin":600,"end":623},"obj":"http://www.uniprot.org/uniprot/P01133"},{"id":"T11","span":{"begin":600,"end":623},"obj":"http://www.uniprot.org/uniprot/Q9GZX1"},{"id":"T12","span":{"begin":610,"end":640},"obj":"http://www.uniprot.org/uniprot/Q9UKM3"},{"id":"T13","span":{"begin":641,"end":659},"obj":"http://www.uniprot.org/uniprot/P01138"},{"id":"T14","span":{"begin":1015,"end":1017},"obj":"http://www.uniprot.org/uniprot/Q9NYU2"},{"id":"T15","span":{"begin":1053,"end":1055},"obj":"http://www.uniprot.org/uniprot/Q9NYU2"},{"id":"T16","span":{"begin":1015,"end":1017},"obj":"http://www.uniprot.org/uniprot/P51161"},{"id":"T17","span":{"begin":1053,"end":1055},"obj":"http://www.uniprot.org/uniprot/P51161"},{"id":"T18","span":{"begin":1277,"end":1298},"obj":"http://www.uniprot.org/uniprot/Q9H5W5"},{"id":"T19","span":{"begin":1277,"end":1298},"obj":"http://www.uniprot.org/uniprot/Q6ZN28"},{"id":"T20","span":{"begin":1277,"end":1298},"obj":"http://www.uniprot.org/uniprot/Q14BD3"},{"id":"T21","span":{"begin":1277,"end":1298},"obj":"http://www.uniprot.org/uniprot/Q9UKS6"},{"id":"T22","span":{"begin":1277,"end":1298},"obj":"http://www.uniprot.org/uniprot/Q96K74"},{"id":"T23","span":{"begin":1277,"end":1298},"obj":"http://www.uniprot.org/uniprot/Q5HYK7"},{"id":"T24","span":{"begin":1277,"end":1298},"obj":"http://www.uniprot.org/uniprot/Q9NZM3"},{"id":"T25","span":{"begin":1277,"end":1298},"obj":"http://www.uniprot.org/uniprot/Q6ZUM4"},{"id":"T26","span":{"begin":1277,"end":1307},"obj":"http://www.uniprot.org/uniprot/Q5TCZ1"}],"attributes":[{"subj":"T1","pred":"source","obj":"uniprot-human"},{"subj":"T2","pred":"source","obj":"uniprot-human"},{"subj":"T3","pred":"source","obj":"uniprot-human"},{"subj":"T4","pred":"source","obj":"uniprot-human"},{"subj":"T5","pred":"source","obj":"uniprot-human"},{"subj":"T6","pred":"source","obj":"uniprot-human"},{"subj":"T7","pred":"source","obj":"uniprot-human"},{"subj":"T8","pred":"source","obj":"uniprot-human"},{"subj":"T9","pred":"source","obj":"uniprot-human"},{"subj":"T10","pred":"source","obj":"uniprot-human"},{"subj":"T11","pred":"source","obj":"uniprot-human"},{"subj":"T12","pred":"source","obj":"uniprot-human"},{"subj":"T13","pred":"source","obj":"uniprot-human"},{"subj":"T14","pred":"source","obj":"uniprot-human"},{"subj":"T15","pred":"source","obj":"uniprot-human"},{"subj":"T16","pred":"source","obj":"uniprot-human"},{"subj":"T17","pred":"source","obj":"uniprot-human"},{"subj":"T18","pred":"source","obj":"uniprot-human"},{"subj":"T19","pred":"source","obj":"uniprot-human"},{"subj":"T20","pred":"source","obj":"uniprot-human"},{"subj":"T21","pred":"source","obj":"uniprot-human"},{"subj":"T22","pred":"source","obj":"uniprot-human"},{"subj":"T23","pred":"source","obj":"uniprot-human"},{"subj":"T24","pred":"source","obj":"uniprot-human"},{"subj":"T25","pred":"source","obj":"uniprot-human"},{"subj":"T26","pred":"source","obj":"uniprot-human"}]},{"project":"uniprot-mouse","denotations":[{"id":"T1","span":{"begin":600,"end":623},"obj":"http://www.uniprot.org/uniprot/P01132"},{"id":"T2","span":{"begin":900,"end":906},"obj":"http://www.uniprot.org/uniprot/Q5SU73"},{"id":"T3","span":{"begin":907,"end":911},"obj":"http://www.uniprot.org/uniprot/Q5SU73"},{"id":"T4","span":{"begin":1015,"end":1017},"obj":"http://www.uniprot.org/uniprot/P51162"},{"id":"T5","span":{"begin":1053,"end":1055},"obj":"http://www.uniprot.org/uniprot/P51162"}],"attributes":[{"subj":"T1","pred":"source","obj":"uniprot-mouse"},{"subj":"T2","pred":"source","obj":"uniprot-mouse"},{"subj":"T3","pred":"source","obj":"uniprot-mouse"},{"subj":"T4","pred":"source","obj":"uniprot-mouse"},{"subj":"T5","pred":"source","obj":"uniprot-mouse"}]},{"project":"GlycoBiology-NCBITAXON","denotations":[{"id":"T1","span":{"begin":203,"end":207},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/3554"},{"id":"T2","span":{"begin":203,"end":207},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/158455"},{"id":"T3","span":{"begin":450,"end":456},"obj":"http://purl.bioontology.org/ontology/STY/T051"},{"id":"T4","span":{"begin":462,"end":467},"obj":"http://purl.bioontology.org/ontology/STY/T096"},{"id":"T5","span":{"begin":655,"end":659},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/3554"},{"id":"T6","span":{"begin":655,"end":659},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/158455"},{"id":"T7","span":{"begin":660,"end":669},"obj":"http://purl.bioontology.org/ontology/STY/T192"},{"id":"T8","span":{"begin":1388,"end":1396},"obj":"http://purl.bioontology.org/ontology/STY/T033"}],"attributes":[{"subj":"T1","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T2","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T3","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T4","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T5","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T6","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T7","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T8","pred":"source","obj":"GlycoBiology-NCBITAXON"}]},{"project":"GO-BP","denotations":[{"id":"T1","span":{"begin":343,"end":355},"obj":"http://purl.obolibrary.org/obo/GO_0036065"},{"id":"T2","span":{"begin":382,"end":394},"obj":"http://purl.obolibrary.org/obo/GO_0036065"},{"id":"T3","span":{"begin":511,"end":517},"obj":"http://purl.obolibrary.org/obo/GO_0040007"},{"id":"T4","span":{"begin":610,"end":616},"obj":"http://purl.obolibrary.org/obo/GO_0040007"},{"id":"T5","span":{"begin":641,"end":647},"obj":"http://purl.obolibrary.org/obo/GO_0040007"}],"attributes":[{"subj":"T1","pred":"source","obj":"GO-BP"},{"subj":"T2","pred":"source","obj":"GO-BP"},{"subj":"T3","pred":"source","obj":"GO-BP"},{"subj":"T4","pred":"source","obj":"GO-BP"},{"subj":"T5","pred":"source","obj":"GO-BP"}]},{"project":"GO-MF","denotations":[{"id":"T1","span":{"begin":610,"end":640},"obj":"http://purl.obolibrary.org/obo/GO_0005154"},{"id":"T2","span":{"begin":610,"end":640},"obj":"http://purl.obolibrary.org/obo/GO_0005160"},{"id":"T3","span":{"begin":641,"end":659},"obj":"http://purl.obolibrary.org/obo/GO_0005160"},{"id":"T4","span":{"begin":1526,"end":1533},"obj":"http://purl.obolibrary.org/obo/GO_0070026"},{"id":"T5","span":{"begin":1526,"end":1533},"obj":"http://purl.obolibrary.org/obo/GO_0003680"},{"id":"T6","span":{"begin":1526,"end":1533},"obj":"http://purl.obolibrary.org/obo/GO_0017091"},{"id":"T7","span":{"begin":1526,"end":1533},"obj":"http://purl.obolibrary.org/obo/GO_0005488"}],"attributes":[{"subj":"T1","pred":"source","obj":"GO-MF"},{"subj":"T2","pred":"source","obj":"GO-MF"},{"subj":"T3","pred":"source","obj":"GO-MF"},{"subj":"T4","pred":"source","obj":"GO-MF"},{"subj":"T5","pred":"source","obj":"GO-MF"},{"subj":"T6","pred":"source","obj":"GO-MF"},{"subj":"T7","pred":"source","obj":"GO-MF"}]},{"project":"GO-CC","denotations":[{"id":"T1","span":{"begin":278,"end":282},"obj":"http://purl.obolibrary.org/obo/GO_0019013"},{"id":"T2","span":{"begin":377,"end":381},"obj":"http://purl.obolibrary.org/obo/GO_0019013"}],"attributes":[{"subj":"T1","pred":"source","obj":"GO-CC"},{"subj":"T2","pred":"source","obj":"GO-CC"}]},{"project":"UBERON-AE","denotations":[{"id":"T1","span":{"begin":549,"end":553},"obj":"http://purl.obolibrary.org/obo/UBERON_0002048"}],"attributes":[{"subj":"T1","pred":"source","obj":"UBERON-AE"}]},{"project":"NGLY1-deficiency","denotations":[{"id":"PD-NGLY1-deficiency-B_T1","span":{"begin":242,"end":261},"obj":"chem:24139"},{"id":"PD-NGLY1-deficiency-B_T2","span":{"begin":263,"end":269},"obj":"chem:24139"}],"namespaces":[{"prefix":"hgnc","uri":"https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:"},{"prefix":"omim","uri":"https://www.omim.org/entry/"},{"prefix":"chem","uri":"https://pubchem.ncbi.nlm.nih.gov/compound/"}],"attributes":[{"subj":"PD-NGLY1-deficiency-B_T1","pred":"source","obj":"NGLY1-deficiency"},{"subj":"PD-NGLY1-deficiency-B_T2","pred":"source","obj":"NGLY1-deficiency"}]},{"project":"DisGeNET5_gene_disease","denotations":[{"id":"17172260-3#24#28#gene2530","span":{"begin":482,"end":486},"obj":"gene2530"},{"id":"17172260-3#142#165#gene1950","span":{"begin":600,"end":623},"obj":"gene1950"},{"id":"17172260-3#76#85#diseaseC0034067","span":{"begin":534,"end":543},"obj":"diseaseC0034067"},{"id":"17172260-3#127#138#diseaseC3887505","span":{"begin":585,"end":596},"obj":"diseaseC3887505"},{"id":"17172260-3#76#85#diseaseC0034067","span":{"begin":534,"end":543},"obj":"diseaseC0034067"},{"id":"17172260-3#127#138#diseaseC3887505","span":{"begin":585,"end":596},"obj":"diseaseC3887505"}],"relations":[{"id":"24#28#gene253076#85#diseaseC0034067","pred":"associated_with","subj":"17172260-3#24#28#gene2530","obj":"17172260-3#76#85#diseaseC0034067"},{"id":"24#28#gene2530127#138#diseaseC3887505","pred":"associated_with","subj":"17172260-3#24#28#gene2530","obj":"17172260-3#127#138#diseaseC3887505"},{"id":"24#28#gene253076#85#diseaseC0034067","pred":"associated_with","subj":"17172260-3#24#28#gene2530","obj":"17172260-3#76#85#diseaseC0034067"},{"id":"24#28#gene2530127#138#diseaseC3887505","pred":"associated_with","subj":"17172260-3#24#28#gene2530","obj":"17172260-3#127#138#diseaseC3887505"},{"id":"142#165#gene195076#85#diseaseC0034067","pred":"associated_with","subj":"17172260-3#142#165#gene1950","obj":"17172260-3#76#85#diseaseC0034067"},{"id":"142#165#gene1950127#138#diseaseC3887505","pred":"associated_with","subj":"17172260-3#142#165#gene1950","obj":"17172260-3#127#138#diseaseC3887505"},{"id":"142#165#gene195076#85#diseaseC0034067","pred":"associated_with","subj":"17172260-3#142#165#gene1950","obj":"17172260-3#76#85#diseaseC0034067"},{"id":"142#165#gene1950127#138#diseaseC3887505","pred":"associated_with","subj":"17172260-3#142#165#gene1950","obj":"17172260-3#127#138#diseaseC3887505"}],"attributes":[{"subj":"17172260-3#24#28#gene2530","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"17172260-3#142#165#gene1950","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"17172260-3#76#85#diseaseC0034067","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"17172260-3#127#138#diseaseC3887505","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"17172260-3#76#85#diseaseC0034067","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"17172260-3#127#138#diseaseC3887505","pred":"source","obj":"DisGeNET5_gene_disease"}]},{"project":"GlycoBiology-MAT","denotations":[{"id":"T1","span":{"begin":549,"end":553},"obj":"http://purl.obolibrary.org/obo/MAT_0000135"}],"attributes":[{"subj":"T1","pred":"source","obj":"GlycoBiology-MAT"}]},{"project":"GlyTouCan-IUPAC","denotations":[{"id":"GlycanIUPAC_T1","span":{"begin":263,"end":269},"obj":"\"http://rdf.glycoinfo.org/glycan/G26693XF\""},{"id":"GlycanIUPAC_T2","span":{"begin":263,"end":269},"obj":"\"http://rdf.glycoinfo.org/glycan/G01864SU\""},{"id":"GlycanIUPAC_T3","span":{"begin":263,"end":269},"obj":"\"http://rdf.glycoinfo.org/glycan/G17605FD\""},{"id":"GlycanIUPAC_T4","span":{"begin":263,"end":269},"obj":"\"http://rdf.glycoinfo.org/glycan/G41950LU\""},{"id":"GlycanIUPAC_T5","span":{"begin":263,"end":269},"obj":"\"http://rdf.glycoinfo.org/glycan/G57195RJ\""},{"id":"GlycanIUPAC_T6","span":{"begin":263,"end":269},"obj":"\"http://rdf.glycoinfo.org/glycan/G85391SA\""},{"id":"GlycanIUPAC_T7","span":{"begin":263,"end":269},"obj":"\"http://rdf.glycoinfo.org/glycan/G89565QL\""},{"id":"GlycanIUPAC_T8","span":{"begin":263,"end":269},"obj":"\"http://rdf.glycoinfo.org/glycan/G80869MR\""},{"id":"GlycanIUPAC_T9","span":{"begin":263,"end":269},"obj":"\"http://rdf.glycoinfo.org/glycan/G55978NL\""},{"id":"GlycanIUPAC_T10","span":{"begin":263,"end":269},"obj":"\"http://rdf.glycoinfo.org/glycan/G54644LT\""},{"id":"GlycanIUPAC_T11","span":{"begin":263,"end":269},"obj":"\"http://rdf.glycoinfo.org/glycan/G25694UG\""},{"id":"GlycanIUPAC_T12","span":{"begin":263,"end":269},"obj":"\"http://rdf.glycoinfo.org/glycan/G25126RB\""},{"id":"GlycanIUPAC_T13","span":{"begin":263,"end":269},"obj":"\"http://rdf.glycoinfo.org/glycan/G51848AD\""},{"id":"GlycanIUPAC_T14","span":{"begin":263,"end":269},"obj":"\"http://rdf.glycoinfo.org/glycan/G94667GM\""},{"id":"GlycanIUPAC_T15","span":{"begin":263,"end":269},"obj":"\"http://rdf.glycoinfo.org/glycan/G30124BO\""},{"id":"GlycanIUPAC_T16","span":{"begin":263,"end":269},"obj":"\"http://rdf.glycoinfo.org/glycan/G82777EZ\""},{"id":"GlycanIUPAC_T17","span":{"begin":263,"end":269},"obj":"\"http://rdf.glycoinfo.org/glycan/G10151YZ\""},{"id":"GlycanIUPAC_T18","span":{"begin":263,"end":269},"obj":"\"http://rdf.glycoinfo.org/glycan/G17585ZM\""},{"id":"GlycanIUPAC_T19","span":{"begin":263,"end":269},"obj":"\"http://rdf.glycoinfo.org/glycan/G04411CJ\""},{"id":"GlycanIUPAC_T20","span":{"begin":263,"end":269},"obj":"\"http://rdf.glycoinfo.org/glycan/G38254HJ\""},{"id":"GlycanIUPAC_T21","span":{"begin":263,"end":269},"obj":"\"http://rdf.glycoinfo.org/glycan/G75188FS\""},{"id":"GlycanIUPAC_T22","span":{"begin":263,"end":269},"obj":"\"http://rdf.glycoinfo.org/glycan/G70374VG\""},{"id":"GlycanIUPAC_T23","span":{"begin":263,"end":269},"obj":"\"http://rdf.glycoinfo.org/glycan/G45176LJ\""},{"id":"GlycanIUPAC_T24","span":{"begin":263,"end":269},"obj":"\"http://rdf.glycoinfo.org/glycan/G30874VW\""},{"id":"GlycanIUPAC_T25","span":{"begin":263,"end":269},"obj":"\"http://rdf.glycoinfo.org/glycan/G69333MI\""},{"id":"GlycanIUPAC_T26","span":{"begin":263,"end":269},"obj":"\"http://rdf.glycoinfo.org/glycan/G10676XO\""},{"id":"GlycanIUPAC_T27","span":{"begin":263,"end":269},"obj":"\"http://rdf.glycoinfo.org/glycan/G14843DJ\""},{"id":"GlycanIUPAC_T28","span":{"begin":263,"end":269},"obj":"\"http://rdf.glycoinfo.org/glycan/G47546FR\""},{"id":"GlycanIUPAC_T29","span":{"begin":263,"end":269},"obj":"\"http://rdf.glycoinfo.org/glycan/G73695ZM\""},{"id":"GlycanIUPAC_T30","span":{"begin":263,"end":269},"obj":"\"http://rdf.glycoinfo.org/glycan/G31923TJ\""},{"id":"GlycanIUPAC_T31","span":{"begin":263,"end":269},"obj":"\"http://rdf.glycoinfo.org/glycan/G60519EP\""},{"id":"GlycanIUPAC_T32","span":{"begin":263,"end":269},"obj":"\"http://rdf.glycoinfo.org/glycan/G07933IA\""},{"id":"GlycanIUPAC_T33","span":{"begin":263,"end":269},"obj":"\"http://rdf.glycoinfo.org/glycan/G40745NH\""},{"id":"GlycanIUPAC_T34","span":{"begin":263,"end":269},"obj":"\"http://rdf.glycoinfo.org/glycan/G54496YV\""},{"id":"GlycanIUPAC_T35","span":{"begin":263,"end":269},"obj":"\"http://rdf.glycoinfo.org/glycan/G62953SQ\""},{"id":"GlycanIUPAC_T36","span":{"begin":263,"end":269},"obj":"\"http://rdf.glycoinfo.org/glycan/G70070AY\""},{"id":"GlycanIUPAC_T37","span":{"begin":263,"end":269},"obj":"\"http://rdf.glycoinfo.org/glycan/G78792WC\""},{"id":"GlycanIUPAC_T38","span":{"begin":263,"end":269},"obj":"\"http://rdf.glycoinfo.org/glycan/G25238AV\""},{"id":"GlycanIUPAC_T39","span":{"begin":263,"end":269},"obj":"\"http://rdf.glycoinfo.org/glycan/G40510DP\""},{"id":"GlycanIUPAC_T40","span":{"begin":263,"end":269},"obj":"\"http://rdf.glycoinfo.org/glycan/G61120TK\""},{"id":"GlycanIUPAC_T41","span":{"begin":263,"end":269},"obj":"\"http://rdf.glycoinfo.org/glycan/G41342KV\""},{"id":"GlycanIUPAC_T42","span":{"begin":263,"end":269},"obj":"\"http://rdf.glycoinfo.org/glycan/G90703NA\""},{"id":"GlycanIUPAC_T43","span":{"begin":263,"end":269},"obj":"\"http://rdf.glycoinfo.org/glycan/G01591HR\""},{"id":"GlycanIUPAC_T44","span":{"begin":263,"end":269},"obj":"\"http://rdf.glycoinfo.org/glycan/G56520XN\""},{"id":"GlycanIUPAC_T45","span":{"begin":263,"end":269},"obj":"\"http://rdf.glycoinfo.org/glycan/G81830JX\""}],"attributes":[{"subj":"GlycanIUPAC_T1","pred":"source","obj":"GlyTouCan-IUPAC"},{"subj":"GlycanIUPAC_T2","pred":"source","obj":"GlyTouCan-IUPAC"},{"subj":"GlycanIUPAC_T3","pred":"source","obj":"GlyTouCan-IUPAC"},{"subj":"GlycanIUPAC_T4","pred":"source","obj":"GlyTouCan-IUPAC"},{"subj":"GlycanIUPAC_T5","pred":"source","obj":"GlyTouCan-IUPAC"},{"subj":"GlycanIUPAC_T6","pred":"source","obj":"GlyTouCan-IUPAC"},{"subj":"GlycanIUPAC_T7","pred":"source","obj":"GlyTouCan-IUPAC"},{"subj":"GlycanIUPAC_T8","pred":"source","obj":"GlyTouCan-IUPAC"},{"subj":"GlycanIUPAC_T9","pred":"source","obj":"GlyTouCan-IUPAC"},{"subj":"GlycanIUPAC_T10","pred":"source","obj":"GlyTouCan-IUPAC"},{"subj":"GlycanIUPAC_T11","pred":"source","obj":"GlyTouCan-IUPAC"},{"subj":"GlycanIUPAC_T12","pred":"source","obj":"GlyTouCan-IUPAC"},{"subj":"GlycanIUPAC_T13","pred":"source","obj":"GlyTouCan-IUPAC"},{"subj":"GlycanIUPAC_T14","pred":"source","obj":"GlyTouCan-IUPAC"},{"subj":"GlycanIUPAC_T15","pred":"source","obj":"GlyTouCan-IUPAC"},{"subj":"GlycanIUPAC_T16","pred":"source","obj":"GlyTouCan-IUPAC"},{"subj":"GlycanIUPAC_T17","pred":"source","obj":"GlyTouCan-IUPAC"},{"subj":"GlycanIUPAC_T18","pred":"source","obj":"GlyTouCan-IUPAC"},{"subj":"GlycanIUPAC_T19","pred":"source","obj":"GlyTouCan-IUPAC"},{"subj":"GlycanIUPAC_T20","pred":"source","obj":"GlyTouCan-IUPAC"},{"subj":"GlycanIUPAC_T21","pred":"source","obj":"GlyTouCan-IUPAC"},{"subj":"GlycanIUPAC_T22","pred":"source","obj":"GlyTouCan-IUPAC"},{"subj":"GlycanIUPAC_T23","pred":"source","obj":"GlyTouCan-IUPAC"},{"subj":"GlycanIUPAC_T24","pred":"source","obj":"GlyTouCan-IUPAC"},{"subj":"GlycanIUPAC_T25","pred":"source","obj":"GlyTouCan-IUPAC"},{"subj":"GlycanIUPAC_T26","pred":"source","obj":"GlyTouCan-IUPAC"},{"subj":"GlycanIUPAC_T27","pred":"source","obj":"GlyTouCan-IUPAC"},{"subj":"GlycanIUPAC_T28","pred":"source","obj":"GlyTouCan-IUPAC"},{"subj":"GlycanIUPAC_T29","pred":"source","obj":"GlyTouCan-IUPAC"},{"subj":"GlycanIUPAC_T30","pred":"source","obj":"GlyTouCan-IUPAC"},{"subj":"GlycanIUPAC_T31","pred":"source","obj":"GlyTouCan-IUPAC"},{"subj":"GlycanIUPAC_T32","pred":"source","obj":"GlyTouCan-IUPAC"},{"subj":"GlycanIUPAC_T33","pred":"source","obj":"GlyTouCan-IUPAC"},{"subj":"GlycanIUPAC_T34","pred":"source","obj":"GlyTouCan-IUPAC"},{"subj":"GlycanIUPAC_T35","pred":"source","obj":"GlyTouCan-IUPAC"},{"subj":"GlycanIUPAC_T36","pred":"source","obj":"GlyTouCan-IUPAC"},{"subj":"GlycanIUPAC_T37","pred":"source","obj":"GlyTouCan-IUPAC"},{"subj":"GlycanIUPAC_T38","pred":"source","obj":"GlyTouCan-IUPAC"},{"subj":"GlycanIUPAC_T39","pred":"source","obj":"GlyTouCan-IUPAC"},{"subj":"GlycanIUPAC_T40","pred":"source","obj":"GlyTouCan-IUPAC"},{"subj":"GlycanIUPAC_T41","pred":"source","obj":"GlyTouCan-IUPAC"},{"subj":"GlycanIUPAC_T42","pred":"source","obj":"GlyTouCan-IUPAC"},{"subj":"GlycanIUPAC_T43","pred":"source","obj":"GlyTouCan-IUPAC"},{"subj":"GlycanIUPAC_T44","pred":"source","obj":"GlyTouCan-IUPAC"},{"subj":"GlycanIUPAC_T45","pred":"source","obj":"GlyTouCan-IUPAC"}]},{"project":"performance-test","denotations":[{"id":"PD-UBERON-AE-B_T1","span":{"begin":549,"end":553},"obj":"http://purl.obolibrary.org/obo/UBERON_0002048"}],"attributes":[{"subj":"PD-UBERON-AE-B_T1","pred":"source","obj":"performance-test"}]},{"project":"mondo_disease","denotations":[{"id":"T1","span":{"begin":534,"end":543},"obj":"Disease"}],"attributes":[{"id":"A1","pred":"mondo_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/MONDO_0004849"},{"subj":"T1","pred":"source","obj":"mondo_disease"}]},{"project":"Anatomy-MAT","denotations":[{"id":"T1","span":{"begin":549,"end":553},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"mat_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/MAT_0000135"},{"subj":"T1","pred":"source","obj":"Anatomy-MAT"}]},{"project":"HP-phenotype","denotations":[{"id":"T1","span":{"begin":511,"end":529},"obj":"Phenotype"},{"id":"T2","span":{"begin":534,"end":543},"obj":"Phenotype"}],"attributes":[{"id":"A1","pred":"hp_id","subj":"T1","obj":"HP:0001510"},{"id":"A2","pred":"hp_id","subj":"T2","obj":"HP:0002097"},{"subj":"T1","pred":"source","obj":"HP-phenotype"},{"subj":"T2","pred":"source","obj":"HP-phenotype"}],"namespaces":[{"prefix":"HP","uri":"http://purl.obolibrary.org/obo/HP_"}]},{"project":"NCBITAXON","denotations":[{"id":"T1","span":{"begin":492,"end":496},"obj":"OrganismTaxon"},{"id":"T2","span":{"begin":770,"end":775},"obj":"OrganismTaxon"}],"attributes":[{"id":"A1","pred":"db_id","subj":"T1","obj":"10088"},{"id":"A2","pred":"db_id","subj":"T2","obj":"9606"},{"subj":"T1","pred":"source","obj":"NCBITAXON"},{"subj":"T2","pred":"source","obj":"NCBITAXON"}]},{"project":"Anatomy-UBERON","denotations":[{"id":"T1","span":{"begin":549,"end":553},"obj":"Body_part"},{"id":"T2","span":{"begin":600,"end":616},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"uberon_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"A2","pred":"uberon_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/UBERON_0000021"},{"subj":"T1","pred":"source","obj":"Anatomy-UBERON"},{"subj":"T2","pred":"source","obj":"Anatomy-UBERON"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"Glycan-Motif","color":"#93ec9c","default":true},{"id":"GlyCosmos6-Glycan-Motif-Image","color":"#ec93a3"},{"id":"sentences","color":"#93bdec"},{"id":"GlyCosmos6-Glycan-Motif-Structure","color":"#d7ec93"},{"id":"Glycosmos6-MAT","color":"#e793ec"},{"id":"DisGeNET","color":"#93eccd"},{"id":"PubmedHPO","color":"#ecb393"},{"id":"ICD10","color":"#9993ec"},{"id":"uniprot-human","color":"#a7ec93"},{"id":"uniprot-mouse","color":"#ec93c1"},{"id":"GlycoBiology-NCBITAXON","color":"#93dbec"},{"id":"GO-BP","color":"#ece393"},{"id":"GO-MF","color":"#c993ec"},{"id":"GO-CC","color":"#93ecaf"},{"id":"UBERON-AE","color":"#ec9593"},{"id":"NGLY1-deficiency","color":"#93abec"},{"id":"DisGeNET5_gene_disease","color":"#c5ec93"},{"id":"GlycoBiology-MAT","color":"#ec93df"},{"id":"GlyTouCan-IUPAC","color":"#93ecdf"},{"id":"performance-test","color":"#ecc593"},{"id":"mondo_disease","color":"#ab93ec"},{"id":"Anatomy-MAT","color":"#94ec93"},{"id":"HP-phenotype","color":"#ec93ae"},{"id":"NCBITAXON","color":"#93c8ec"},{"id":"Anatomy-UBERON","color":"#e2ec93"}]}]}}