PubMed:17035713
Annnotations
LitCoin-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 0-104 | Sentence | denotes | Chloroacetaldehyde as a sulfhydryl reagent: the role of critical thiol groups in ifosfamide nephropathy. |
T2 | 105-269 | Sentence | denotes | Chloroacetaldehyde (CAA) is a metabolite of the alkylating agent ifosfamide (IFO) and putatively responsible for renal damage following anti-tumor therapy with IFO. |
T3 | 270-371 | Sentence | denotes | Depletion of sulfhydryl (SH) groups has been reported from cell culture, animal and clinical studies. |
T4 | 372-479 | Sentence | denotes | In this work the effect of CAA on human proximal tubule cells in primary culture (hRPTEC) was investigated. |
T5 | 480-608 | Sentence | denotes | Toxicity of CAA was determined by protein content, cell number, LDH release, trypan blue exclusion assay and caspase-3 activity. |
T6 | 609-659 | Sentence | denotes | Free thiols were measured by the method of Ellman. |
T7 | 660-784 | Sentence | denotes | CAA reduced hRPTEC cell number and protein, induced a loss in free intracellular thiols and an increase in necrosis markers. |
T8 | 785-876 | Sentence | denotes | CAA but not acrolein inhibited the cysteine proteases caspase-3, caspase-8 and cathepsin B. |
T9 | 877-930 | Sentence | denotes | Caspase activation by cisplatin was inhibited by CAA. |
T10 | 931-1055 | Sentence | denotes | In cells stained with fluorescent dyes targeting lysosomes, CAA induced an increase in lysosomal size and lysosomal leakage. |
T11 | 1056-1153 | Sentence | denotes | The effects of CAA on cysteine protease activities and thiols could be reproduced in cell lysate. |
T12 | 1154-1343 | Sentence | denotes | Acidification, which slowed the reaction of CAA with thiol donors, could also attenuate effects of CAA on necrosis markers, thiol depletion and cysteine protease inhibition in living cells. |
T13 | 1344-1449 | Sentence | denotes | Thus, CAA directly reacts with cellular protein and non-protein thiols, mediating its toxicity on hRPTEC. |
T14 | 1450-1494 | Sentence | denotes | This effect can be reduced by acidification. |
T15 | 1495-1586 | Sentence | denotes | Therefore, urinary acidification could be an option to prevent IFO nephropathy in patients. |
LitCoin-entities-OrganismTaxon-PD
Id | Subject | Object | Predicate | Lexical cue | db_id |
---|---|---|---|---|---|
T1 | 406-411 | OrganismTaxon | denotes | human | NCBItxid:9606 |
LitCoin-entities
Id | Subject | Object | Predicate | Lexical cue | db_id |
---|---|---|---|---|---|
3476 | 0-18 | ChemicalEntity | denotes | Chloroacetaldehyde | MESH:C004656 |
3477 | 24-42 | ChemicalEntity | denotes | sulfhydryl reagent | MESH:D013439 |
3478 | 65-70 | ChemicalEntity | denotes | thiol | MESH:D013438 |
3479 | 81-91 | ChemicalEntity | denotes | ifosfamide | MESH:D007069 |
3480 | 92-103 | DiseaseOrPhenotypicFeature | denotes | nephropathy | MESH:D007674 |
3481 | 105-123 | ChemicalEntity | denotes | Chloroacetaldehyde | MESH:C004656 |
3482 | 125-128 | ChemicalEntity | denotes | CAA | MESH:C004656 |
3483 | 153-169 | ChemicalEntity | denotes | alkylating agent | MESH:D000477 |
3484 | 170-180 | ChemicalEntity | denotes | ifosfamide | MESH:D007069 |
3485 | 182-185 | ChemicalEntity | denotes | IFO | MESH:D007069 |
3486 | 218-230 | DiseaseOrPhenotypicFeature | denotes | renal damage | MESH:D007674 |
3487 | 246-251 | DiseaseOrPhenotypicFeature | denotes | tumor | MESH:D009369 |
3488 | 265-268 | ChemicalEntity | denotes | IFO | MESH:D007069 |
3489 | 283-293 | ChemicalEntity | denotes | sulfhydryl | MESH:D013439 |
3490 | 295-297 | ChemicalEntity | denotes | SH | MESH:D013439 |
3491 | 399-402 | ChemicalEntity | denotes | CAA | MESH:C004656 |
3492 | 406-411 | OrganismTaxon | denotes | human | NCBITaxon:9606 |
3493 | 454-460 | CellLine | denotes | hRPTEC | NCBITaxon:9606 |
3494 | 480-488 | DiseaseOrPhenotypicFeature | denotes | Toxicity | MESH:D064420 |
3495 | 492-495 | ChemicalEntity | denotes | CAA | MESH:C004656 |
3496 | 544-547 | ChemicalEntity | denotes | LDH | MESH:D007770 |
3497 | 557-568 | ChemicalEntity | denotes | trypan blue | MESH:D014343 |
3498 | 589-598 | GeneOrGeneProduct | denotes | caspase-3 | NCBIGene:836 |
3499 | 614-620 | ChemicalEntity | denotes | thiols | MESH:D013438 |
3500 | 660-663 | ChemicalEntity | denotes | CAA | MESH:C004656 |
3501 | 672-678 | CellLine | denotes | hRPTEC | NCBITaxon:9606 |
3502 | 741-747 | ChemicalEntity | denotes | thiols | MESH:D013438 |
3503 | 767-775 | DiseaseOrPhenotypicFeature | denotes | necrosis | MESH:D009336 |
3504 | 785-788 | ChemicalEntity | denotes | CAA | MESH:C004656 |
3505 | 797-805 | ChemicalEntity | denotes | acrolein | MESH:D000171 |
3506 | 820-838 | GeneOrGeneProduct | denotes | cysteine proteases | NCBIGene:1508|NCBIGene:836|NCBIGene:841 |
3507 | 839-848 | GeneOrGeneProduct | denotes | caspase-3 | NCBIGene:836 |
3508 | 850-859 | GeneOrGeneProduct | denotes | caspase-8 | NCBIGene:841 |
3509 | 864-875 | GeneOrGeneProduct | denotes | cathepsin B | NCBIGene:1508 |
3510 | 877-884 | GeneOrGeneProduct | denotes | Caspase | NCBIGene:836|NCBIGene:841 |
3511 | 899-908 | ChemicalEntity | denotes | cisplatin | MESH:D002945 |
3512 | 926-929 | ChemicalEntity | denotes | CAA | MESH:C004656 |
3513 | 991-994 | ChemicalEntity | denotes | CAA | MESH:C004656 |
3514 | 1071-1074 | ChemicalEntity | denotes | CAA | MESH:C004656 |
3515 | 1078-1095 | GeneOrGeneProduct | denotes | cysteine protease | NCBIGene:1508|NCBIGene:836|NCBIGene:841 |
3516 | 1111-1117 | ChemicalEntity | denotes | thiols | MESH:D013438 |
3517 | 1198-1201 | ChemicalEntity | denotes | CAA | MESH:C004656 |
3518 | 1207-1212 | ChemicalEntity | denotes | thiol | MESH:D013438 |
3519 | 1253-1256 | ChemicalEntity | denotes | CAA | MESH:C004656 |
3520 | 1260-1268 | DiseaseOrPhenotypicFeature | denotes | necrosis | MESH:D009336 |
3521 | 1278-1283 | ChemicalEntity | denotes | thiol | MESH:D013438 |
3522 | 1298-1315 | GeneOrGeneProduct | denotes | cysteine protease | NCBIGene:1508|NCBIGene:836|NCBIGene:841 |
3523 | 1350-1353 | ChemicalEntity | denotes | CAA | MESH:C004656 |
3524 | 1408-1414 | ChemicalEntity | denotes | thiols | MESH:D013438 |
3525 | 1430-1438 | DiseaseOrPhenotypicFeature | denotes | toxicity | MESH:D064420 |
3526 | 1442-1448 | CellLine | denotes | hRPTEC | NCBITaxon:9606 |
3527 | 1558-1561 | ChemicalEntity | denotes | IFO | MESH:D007069 |
3528 | 1562-1573 | DiseaseOrPhenotypicFeature | denotes | nephropathy | MESH:D007674 |
3529 | 1577-1585 | OrganismTaxon | denotes | patients | NCBITaxon:9606 |
LitCoin-GeneOrGeneProduct-v2
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 65-70 | GeneOrGeneProduct | denotes | thiol |
T2 | 329-333 | GeneOrGeneProduct | denotes | cell |
T3 | 421-427 | GeneOrGeneProduct | denotes | tubule |
T4 | 514-521 | GeneOrGeneProduct | denotes | protein |
T5 | 531-535 | GeneOrGeneProduct | denotes | cell |
T6 | 564-568 | GeneOrGeneProduct | denotes | blue |
T7 | 589-598 | GeneOrGeneProduct | denotes | caspase-3 |
T8 | 642-648 | GeneOrGeneProduct | denotes | method |
T9 | 664-671 | GeneOrGeneProduct | denotes | reduced |
T10 | 679-683 | GeneOrGeneProduct | denotes | cell |
T11 | 695-702 | GeneOrGeneProduct | denotes | protein |
T12 | 820-838 | GeneOrGeneProduct | denotes | cysteine proteases |
T13 | 839-848 | GeneOrGeneProduct | denotes | caspase-3 |
T14 | 850-859 | GeneOrGeneProduct | denotes | caspase-8 |
T15 | 864-875 | GeneOrGeneProduct | denotes | cathepsin B |
T16 | 877-884 | GeneOrGeneProduct | denotes | Caspase |
T17 | 899-908 | GeneOrGeneProduct | denotes | cisplatin |
T18 | 1078-1095 | GeneOrGeneProduct | denotes | cysteine protease |
T19 | 1141-1145 | GeneOrGeneProduct | denotes | cell |
T20 | 1207-1212 | GeneOrGeneProduct | denotes | thiol |
T21 | 1278-1283 | GeneOrGeneProduct | denotes | thiol |
T22 | 1298-1315 | GeneOrGeneProduct | denotes | cysteine protease |
T23 | 1375-1391 | GeneOrGeneProduct | denotes | cellular protein |
T24 | 1400-1407 | GeneOrGeneProduct | denotes | protein |
T25 | 1469-1476 | GeneOrGeneProduct | denotes | reduced |
LitCoin-GeneOrGeneProduct-v0
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 65-70 | GeneOrGeneProduct | denotes | thiol |
T2 | 191-201 | GeneOrGeneProduct | denotes | putatively |
T3 | 224-230 | GeneOrGeneProduct | denotes | damage |
T4 | 246-251 | GeneOrGeneProduct | denotes | tumor |
T5 | 270-279 | GeneOrGeneProduct | denotes | Depletion |
T6 | 329-333 | GeneOrGeneProduct | denotes | cell |
T7 | 421-427 | GeneOrGeneProduct | denotes | tubule |
T8 | 428-433 | GeneOrGeneProduct | denotes | cells |
T9 | 500-510 | GeneOrGeneProduct | denotes | determined |
T10 | 514-521 | GeneOrGeneProduct | denotes | protein |
T11 | 531-535 | GeneOrGeneProduct | denotes | cell |
T12 | 564-568 | GeneOrGeneProduct | denotes | blue |
T13 | 589-598 | GeneOrGeneProduct | denotes | caspase-3 |
T14 | 599-607 | GeneOrGeneProduct | denotes | activity |
T15 | 614-620 | GeneOrGeneProduct | denotes | thiols |
T16 | 642-648 | GeneOrGeneProduct | denotes | method |
T17 | 664-671 | GeneOrGeneProduct | denotes | reduced |
T18 | 679-683 | GeneOrGeneProduct | denotes | cell |
T19 | 695-702 | GeneOrGeneProduct | denotes | protein |
T20 | 704-711 | GeneOrGeneProduct | denotes | induced |
T21 | 741-747 | GeneOrGeneProduct | denotes | thiols |
T22 | 820-838 | GeneOrGeneProduct | denotes | cysteine proteases |
T23 | 839-848 | GeneOrGeneProduct | denotes | caspase-3 |
T24 | 850-859 | GeneOrGeneProduct | denotes | caspase-8 |
T25 | 864-875 | GeneOrGeneProduct | denotes | cathepsin B |
T26 | 877-884 | GeneOrGeneProduct | denotes | Caspase |
T27 | 885-895 | GeneOrGeneProduct | denotes | activation |
T28 | 899-908 | GeneOrGeneProduct | denotes | cisplatin |
T29 | 934-939 | GeneOrGeneProduct | denotes | cells |
T30 | 995-1002 | GeneOrGeneProduct | denotes | induced |
T31 | 1028-1032 | GeneOrGeneProduct | denotes | size |
T32 | 1078-1095 | GeneOrGeneProduct | denotes | cysteine protease |
T33 | 1096-1106 | GeneOrGeneProduct | denotes | activities |
T34 | 1111-1117 | GeneOrGeneProduct | denotes | thiols |
T35 | 1141-1145 | GeneOrGeneProduct | denotes | cell |
T36 | 1175-1181 | GeneOrGeneProduct | denotes | slowed |
T37 | 1207-1212 | GeneOrGeneProduct | denotes | thiol |
T38 | 1232-1241 | GeneOrGeneProduct | denotes | attenuate |
T39 | 1278-1283 | GeneOrGeneProduct | denotes | thiol |
T40 | 1284-1293 | GeneOrGeneProduct | denotes | depletion |
T41 | 1298-1315 | GeneOrGeneProduct | denotes | cysteine protease |
T42 | 1337-1342 | GeneOrGeneProduct | denotes | cells |
T43 | 1375-1391 | GeneOrGeneProduct | denotes | cellular protein |
T44 | 1400-1407 | GeneOrGeneProduct | denotes | protein |
T45 | 1408-1414 | GeneOrGeneProduct | denotes | thiols |
T46 | 1416-1425 | GeneOrGeneProduct | denotes | mediating |
T47 | 1469-1476 | GeneOrGeneProduct | denotes | reduced |
LitCoin-Disease-MeSH
Id | Subject | Object | Predicate | Lexical cue | originalLabel |
---|---|---|---|---|---|
T1 | 92-103 | DiseaseOrPhenotypicFeature | denotes | nephropathy | DISEASE |
T2 | 218-230 | DiseaseOrPhenotypicFeature | denotes | renal damage | DISEASE |
T3 | 246-251 | DiseaseOrPhenotypicFeature | denotes | tumor | D009369 |
T4 | 480-488 | DiseaseOrPhenotypicFeature | denotes | Toxicity | DISEASE |
T5 | 767-775 | DiseaseOrPhenotypicFeature | denotes | necrosis | D009336 |
T6 | 1260-1268 | DiseaseOrPhenotypicFeature | denotes | necrosis | D009336 |
T7 | 1430-1438 | DiseaseOrPhenotypicFeature | denotes | toxicity | DISEASE |
T8 | 1562-1573 | DiseaseOrPhenotypicFeature | denotes | nephropathy | DISEASE |
LitCoin-GeneOrGeneProduct-v3
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 421-427 | GeneOrGeneProduct | denotes | tubule |
T2 | 514-529 | GeneOrGeneProduct | denotes | protein content |
T3 | 589-598 | GeneOrGeneProduct | denotes | caspase-3 |
T4 | 820-838 | GeneOrGeneProduct | denotes | cysteine proteases |
T5 | 839-848 | GeneOrGeneProduct | denotes | caspase-3 |
T6 | 850-859 | GeneOrGeneProduct | denotes | caspase-8 |
T7 | 864-875 | GeneOrGeneProduct | denotes | cathepsin B |
T8 | 877-884 | GeneOrGeneProduct | denotes | Caspase |
T9 | 1078-1095 | GeneOrGeneProduct | denotes | cysteine protease |
T10 | 1298-1315 | GeneOrGeneProduct | denotes | cysteine protease |
T11 | 1375-1391 | GeneOrGeneProduct | denotes | cellular protein |
LitCoin_Mondo_095
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T1 | 92-103 | DiseaseOrPhenotypicFeature | denotes | nephropathy | 0005240 |
T2 | 125-128 | DiseaseOrPhenotypicFeature | denotes | CAA | 0011921 |
T3 | 246-251 | DiseaseOrPhenotypicFeature | denotes | tumor | 0005070 |
T4 | 399-402 | DiseaseOrPhenotypicFeature | denotes | CAA | 0011921 |
T5 | 492-495 | DiseaseOrPhenotypicFeature | denotes | CAA | 0011921 |
T6 | 660-663 | DiseaseOrPhenotypicFeature | denotes | CAA | 0011921 |
T7 | 785-788 | DiseaseOrPhenotypicFeature | denotes | CAA | 0011921 |
T8 | 926-929 | DiseaseOrPhenotypicFeature | denotes | CAA | 0011921 |
T9 | 991-994 | DiseaseOrPhenotypicFeature | denotes | CAA | 0011921 |
T10 | 1071-1074 | DiseaseOrPhenotypicFeature | denotes | CAA | 0011921 |
T11 | 1198-1201 | DiseaseOrPhenotypicFeature | denotes | CAA | 0011921 |
T12 | 1253-1256 | DiseaseOrPhenotypicFeature | denotes | CAA | 0011921 |
T13 | 1350-1353 | DiseaseOrPhenotypicFeature | denotes | CAA | 0011921 |
T14 | 1462-1465 | DiseaseOrPhenotypicFeature | denotes | can | 0012833 |
T15 | 1562-1573 | DiseaseOrPhenotypicFeature | denotes | nephropathy | 0005240 |
LitCoin-MeSH-Disease-2
Id | Subject | Object | Predicate | Lexical cue | ID: |
---|---|---|---|---|---|
T1 | 92-103 | DiseaseOrPhenotypicFeature | denotes | nephropathy | DISEASE |
T2 | 218-230 | DiseaseOrPhenotypicFeature | denotes | renal damage | DISEASE |
T3 | 246-251 | DiseaseOrPhenotypicFeature | denotes | tumor | D009369 |
T4 | 480-488 | DiseaseOrPhenotypicFeature | denotes | Toxicity | DISEASE |
T5 | 767-775 | DiseaseOrPhenotypicFeature | denotes | necrosis | D009336 |
T6 | 1260-1268 | DiseaseOrPhenotypicFeature | denotes | necrosis | D009336 |
T7 | 1430-1438 | DiseaseOrPhenotypicFeature | denotes | toxicity | DISEASE |
T8 | 1562-1573 | DiseaseOrPhenotypicFeature | denotes | nephropathy | DISEASE |
LitCoin_CellLine
Id | Subject | Object | Predicate | Lexical cue | cellosaurus_accession_id |
---|---|---|---|---|---|
T1 | 454-460 | CellLine | denotes | hRPTEC | AddedByYayamamo |
T2 | 672-678 | CellLine | denotes | hRPTEC | AddedByYayamamo |
T3 | 1442-1448 | CellLine | denotes | hRPTEC | AddedByYayamamo |
LitCoin-MONDO_bioort2019
Id | Subject | Object | Predicate | Lexical cue | #label |
---|---|---|---|---|---|
T1 | 92-103 | DiseaseOrPhenotypicFeature | denotes | nephropathy | DISEASE |
T2 | 218-230 | DiseaseOrPhenotypicFeature | denotes | renal damage | DISEASE |
T3 | 246-251 | DiseaseOrPhenotypicFeature | denotes | tumor | D009369 |
T4 | 480-488 | DiseaseOrPhenotypicFeature | denotes | Toxicity | DISEASE |
T5 | 1430-1438 | DiseaseOrPhenotypicFeature | denotes | toxicity | DISEASE |
T6 | 1562-1573 | DiseaseOrPhenotypicFeature | denotes | nephropathy | DISEASE |
LitCoin-Chemical-MeSH-CHEBI
Id | Subject | Object | Predicate | Lexical cue | ID: |
---|---|---|---|---|---|
T1 | 0-18 | ChemicalEntity | denotes | Chloroacetaldehyde | http://purl.obolibrary.org/obo/CHEBI_27871 |
T2 | 24-42 | ChemicalEntity | denotes | sulfhydryl reagent | ChemicalEntity |
T3 | 65-70 | ChemicalEntity | denotes | thiol | D013438|http://purl.obolibrary.org/obo/CHEBI_29917|http://purl.obolibrary.org/obo/CHEBI_29256 |
T6 | 81-91 | ChemicalEntity | denotes | ifosfamide | D007069|http://purl.obolibrary.org/obo/CHEBI_5864 |
T8 | 105-123 | ChemicalEntity | denotes | Chloroacetaldehyde | http://purl.obolibrary.org/obo/CHEBI_27871 |
T9 | 125-128 | ChemicalEntity | denotes | CAA | http://purl.obolibrary.org/obo/CHEBI_27869|http://purl.obolibrary.org/obo/CHEBI_27871 |
T11 | 153-169 | ChemicalEntity | denotes | alkylating agent | ChemicalEntity |
T12 | 170-180 | ChemicalEntity | denotes | ifosfamide | D007069|http://purl.obolibrary.org/obo/CHEBI_5864 |
T14 | 182-185 | ChemicalEntity | denotes | IFO | ChemicalEntity|D007069 |
T16 | 265-268 | ChemicalEntity | denotes | IFO | ChemicalEntity|D007069 |
T18 | 283-293 | ChemicalEntity | denotes | sulfhydryl | ChemicalEntity |
T19 | 295-297 | ChemicalEntity | denotes | SH | ChemicalEntity |
T20 | 399-402 | ChemicalEntity | denotes | CAA | http://purl.obolibrary.org/obo/CHEBI_27869|http://purl.obolibrary.org/obo/CHEBI_27871 |
T22 | 492-495 | ChemicalEntity | denotes | CAA | http://purl.obolibrary.org/obo/CHEBI_27869|http://purl.obolibrary.org/obo/CHEBI_27871 |
T24 | 544-547 | ChemicalEntity | denotes | LDH | ChemicalEntity |
T25 | 557-568 | ChemicalEntity | denotes | trypan blue | D014343|http://purl.obolibrary.org/obo/CHEBI_78897 |
T27 | 614-620 | ChemicalEntity | denotes | thiols | D013438|http://purl.obolibrary.org/obo/CHEBI_29256 |
T29 | 660-663 | ChemicalEntity | denotes | CAA | http://purl.obolibrary.org/obo/CHEBI_27869|http://purl.obolibrary.org/obo/CHEBI_27871 |
T31 | 741-747 | ChemicalEntity | denotes | thiols | D013438|http://purl.obolibrary.org/obo/CHEBI_29256 |
T33 | 785-788 | ChemicalEntity | denotes | CAA | http://purl.obolibrary.org/obo/CHEBI_27869|http://purl.obolibrary.org/obo/CHEBI_27871 |
T35 | 797-805 | ChemicalEntity | denotes | acrolein | D000171|http://purl.obolibrary.org/obo/CHEBI_15368 |
T37 | 820-838 | ChemicalEntity | denotes | cysteine proteases | D057056 |
T38 | 864-875 | ChemicalEntity | denotes | cathepsin B | D002401 |
T39 | 899-908 | ChemicalEntity | denotes | cisplatin | D002945|http://purl.obolibrary.org/obo/CHEBI_27899 |
T41 | 926-929 | ChemicalEntity | denotes | CAA | http://purl.obolibrary.org/obo/CHEBI_27869|http://purl.obolibrary.org/obo/CHEBI_27871 |
T43 | 991-994 | ChemicalEntity | denotes | CAA | http://purl.obolibrary.org/obo/CHEBI_27869|http://purl.obolibrary.org/obo/CHEBI_27871 |
T45 | 1071-1074 | ChemicalEntity | denotes | CAA | http://purl.obolibrary.org/obo/CHEBI_27869|http://purl.obolibrary.org/obo/CHEBI_27871 |
T47 | 1078-1095 | ChemicalEntity | denotes | cysteine protease | D057056 |
T48 | 1111-1117 | ChemicalEntity | denotes | thiols | D013438|http://purl.obolibrary.org/obo/CHEBI_29256 |
T50 | 1198-1201 | ChemicalEntity | denotes | CAA | http://purl.obolibrary.org/obo/CHEBI_27869|http://purl.obolibrary.org/obo/CHEBI_27871 |
T52 | 1207-1212 | ChemicalEntity | denotes | thiol | D013438|http://purl.obolibrary.org/obo/CHEBI_29917|http://purl.obolibrary.org/obo/CHEBI_29256 |
T55 | 1253-1256 | ChemicalEntity | denotes | CAA | http://purl.obolibrary.org/obo/CHEBI_27869|http://purl.obolibrary.org/obo/CHEBI_27871 |
T57 | 1278-1283 | ChemicalEntity | denotes | thiol | D013438|http://purl.obolibrary.org/obo/CHEBI_29917|http://purl.obolibrary.org/obo/CHEBI_29256 |
T60 | 1298-1315 | ChemicalEntity | denotes | cysteine protease | D057056 |
T61 | 1350-1353 | ChemicalEntity | denotes | CAA | http://purl.obolibrary.org/obo/CHEBI_27869|http://purl.obolibrary.org/obo/CHEBI_27871 |
T63 | 1408-1414 | ChemicalEntity | denotes | thiols | D013438|http://purl.obolibrary.org/obo/CHEBI_29256 |
T65 | 1558-1561 | ChemicalEntity | denotes | IFO | ChemicalEntity|D007069 |
LitCoin-NCBITaxon-2
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 406-411 | OrganismTaxon | denotes | human |
T2 | 1577-1585 | OrganismTaxon | denotes | patients |
LitCoin-training-merged
Id | Subject | Object | Predicate | Lexical cue | #label | ID: | cellosaurus_accession_id |
---|---|---|---|---|---|---|---|
T3 | 1442-1448 | CellLine | denotes | hRPTEC | AddedByYayamamo | ||
T2 | 672-678 | CellLine | denotes | hRPTEC | AddedByYayamamo | ||
T1 | 454-460 | CellLine | denotes | hRPTEC | AddedByYayamamo | ||
T65 | 1558-1561 | ChemicalEntity | denotes | IFO | D007069|ChemicalEntity | ||
T63 | 1408-1414 | ChemicalEntity | denotes | thiols | http://purl.obolibrary.org/obo/CHEBI_29256|D013438 | ||
T61 | 1350-1353 | ChemicalEntity | denotes | CAA | http://purl.obolibrary.org/obo/CHEBI_27871|http://purl.obolibrary.org/obo/CHEBI_27869 | ||
T60 | 1298-1315 | ChemicalEntity | denotes | cysteine protease | D057056 | ||
T57 | 1278-1283 | ChemicalEntity | denotes | thiol | http://purl.obolibrary.org/obo/CHEBI_29256|http://purl.obolibrary.org/obo/CHEBI_29917|D013438 | ||
T55 | 1253-1256 | ChemicalEntity | denotes | CAA | http://purl.obolibrary.org/obo/CHEBI_27871|http://purl.obolibrary.org/obo/CHEBI_27869 | ||
T52 | 1207-1212 | ChemicalEntity | denotes | thiol | http://purl.obolibrary.org/obo/CHEBI_29256|http://purl.obolibrary.org/obo/CHEBI_29917|D013438 | ||
T50 | 1198-1201 | ChemicalEntity | denotes | CAA | http://purl.obolibrary.org/obo/CHEBI_27871|http://purl.obolibrary.org/obo/CHEBI_27869 | ||
T48 | 1111-1117 | ChemicalEntity | denotes | thiols | http://purl.obolibrary.org/obo/CHEBI_29256|D013438 | ||
T47 | 1078-1095 | ChemicalEntity | denotes | cysteine protease | D057056 | ||
T45 | 1071-1074 | ChemicalEntity | denotes | CAA | http://purl.obolibrary.org/obo/CHEBI_27871|http://purl.obolibrary.org/obo/CHEBI_27869 | ||
T43 | 991-994 | ChemicalEntity | denotes | CAA | http://purl.obolibrary.org/obo/CHEBI_27871|http://purl.obolibrary.org/obo/CHEBI_27869 | ||
T41 | 926-929 | ChemicalEntity | denotes | CAA | http://purl.obolibrary.org/obo/CHEBI_27871|http://purl.obolibrary.org/obo/CHEBI_27869 | ||
T39 | 899-908 | ChemicalEntity | denotes | cisplatin | http://purl.obolibrary.org/obo/CHEBI_27899|D002945 | ||
T38 | 864-875 | ChemicalEntity | denotes | cathepsin B | D002401 | ||
T37 | 820-838 | ChemicalEntity | denotes | cysteine proteases | D057056 | ||
T35 | 797-805 | ChemicalEntity | denotes | acrolein | http://purl.obolibrary.org/obo/CHEBI_15368|D000171 | ||
T33 | 785-788 | ChemicalEntity | denotes | CAA | http://purl.obolibrary.org/obo/CHEBI_27871|http://purl.obolibrary.org/obo/CHEBI_27869 | ||
T31 | 741-747 | ChemicalEntity | denotes | thiols | http://purl.obolibrary.org/obo/CHEBI_29256|D013438 | ||
T29 | 660-663 | ChemicalEntity | denotes | CAA | http://purl.obolibrary.org/obo/CHEBI_27871|http://purl.obolibrary.org/obo/CHEBI_27869 | ||
T27 | 614-620 | ChemicalEntity | denotes | thiols | http://purl.obolibrary.org/obo/CHEBI_29256|D013438 | ||
T25 | 557-568 | ChemicalEntity | denotes | trypan blue | http://purl.obolibrary.org/obo/CHEBI_78897|D014343 | ||
T24 | 544-547 | ChemicalEntity | denotes | LDH | ChemicalEntity | ||
T22 | 492-495 | ChemicalEntity | denotes | CAA | http://purl.obolibrary.org/obo/CHEBI_27871|http://purl.obolibrary.org/obo/CHEBI_27869 | ||
T20 | 399-402 | ChemicalEntity | denotes | CAA | http://purl.obolibrary.org/obo/CHEBI_27871|http://purl.obolibrary.org/obo/CHEBI_27869 | ||
T19 | 295-297 | ChemicalEntity | denotes | SH | ChemicalEntity | ||
T18 | 283-293 | ChemicalEntity | denotes | sulfhydryl | ChemicalEntity | ||
T16 | 265-268 | ChemicalEntity | denotes | IFO | D007069|ChemicalEntity | ||
T14 | 182-185 | ChemicalEntity | denotes | IFO | D007069|ChemicalEntity | ||
T12 | 170-180 | ChemicalEntity | denotes | ifosfamide | http://purl.obolibrary.org/obo/CHEBI_5864|D007069 | ||
T11 | 153-169 | ChemicalEntity | denotes | alkylating agent | ChemicalEntity | ||
T9 | 125-128 | ChemicalEntity | denotes | CAA | http://purl.obolibrary.org/obo/CHEBI_27871|http://purl.obolibrary.org/obo/CHEBI_27869 | ||
T8 | 105-123 | ChemicalEntity | denotes | Chloroacetaldehyde | http://purl.obolibrary.org/obo/CHEBI_27871 | ||
T6 | 81-91 | ChemicalEntity | denotes | ifosfamide | http://purl.obolibrary.org/obo/CHEBI_5864|D007069 | ||
T7021 | 65-70 | ChemicalEntity | denotes | thiol | http://purl.obolibrary.org/obo/CHEBI_29256|http://purl.obolibrary.org/obo/CHEBI_29917|D013438 | ||
T54356 | 24-42 | ChemicalEntity | denotes | sulfhydryl reagent | ChemicalEntity | ||
T66550 | 0-18 | ChemicalEntity | denotes | Chloroacetaldehyde | http://purl.obolibrary.org/obo/CHEBI_27871 | ||
T86529 | 1375-1391 | GeneOrGeneProduct | denotes | cellular protein | |||
T10 | 1298-1315 | GeneOrGeneProduct | denotes | cysteine protease | |||
T67388 | 1078-1095 | GeneOrGeneProduct | denotes | cysteine protease | |||
T99515 | 877-884 | GeneOrGeneProduct | denotes | Caspase | |||
T7 | 864-875 | GeneOrGeneProduct | denotes | cathepsin B | |||
T42236 | 850-859 | GeneOrGeneProduct | denotes | caspase-8 | |||
T5 | 839-848 | GeneOrGeneProduct | denotes | caspase-3 | |||
T4 | 820-838 | GeneOrGeneProduct | denotes | cysteine proteases | |||
T44498 | 589-598 | GeneOrGeneProduct | denotes | caspase-3 | |||
T4398 | 514-529 | GeneOrGeneProduct | denotes | protein content | |||
T1313 | 421-427 | GeneOrGeneProduct | denotes | tubule | |||
T63890 | 1562-1573 | DiseaseOrPhenotypicFeature | denotes | nephropathy | DISEASE | ||
T62693 | 1430-1438 | DiseaseOrPhenotypicFeature | denotes | toxicity | DISEASE | ||
T49495 | 480-488 | DiseaseOrPhenotypicFeature | denotes | Toxicity | DISEASE | ||
T2827 | 246-251 | DiseaseOrPhenotypicFeature | denotes | tumor | D009369 | ||
T91271 | 218-230 | DiseaseOrPhenotypicFeature | denotes | renal damage | DISEASE | ||
T68882 | 92-103 | DiseaseOrPhenotypicFeature | denotes | nephropathy | DISEASE | ||
T21690 | 1577-1585 | OrganismTaxon | denotes | patients | |||
T42707 | 406-411 | OrganismTaxon | denotes | human |
PubmedHPO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 246-251 | HP_0002664 | denotes | tumor |
T2 | 1562-1573 | HP_0000112 | denotes | nephropathy |