PubMed:17003357 / 970-1276
Annnotations
LitCoin-entities-OrganismTaxon-PD
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| T1 | 179-184 | OrganismTaxon | denotes | codon | NCBItxid:79338 |
LitCoin-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T8 | 10-199 | Sentence | denotes | Analysis of PTPN22 transcripts from a subject heterozygous for this variant indicated that it interfered with normal mRNA splicing, resulting in a premature termination codon after exon 17. |
LitCoin-entities
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| 3395 | 22-28 | GeneOrGeneProduct | denotes | PTPN22 | NCBIGene:26191 |
| 3396 | 246-253 | SequenceVariant | denotes | 1858C/T | DBSNP:rs2476601 |
| 3397 | 291-306 | DiseaseOrPhenotypicFeature | denotes | type 1 diabetes | MESH:D003922 |
LitCoin-SeqVar
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T4 | 246-251 | SequenceVariant | denotes | 1858C |
LitCoin-GeneOrGeneProduct-v0
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T26 | 22-28 | GeneOrGeneProduct | denotes | PTPN22 |
| T27 | 29-40 | GeneOrGeneProduct | denotes | transcripts |
| T28 | 127-131 | GeneOrGeneProduct | denotes | mRNA |
| T29 | 132-140 | GeneOrGeneProduct | denotes | splicing |
| T30 | 152-156 | GeneOrGeneProduct | denotes | in a |
| T31 | 268-273 | GeneOrGeneProduct | denotes | major |
| T32 | 298-306 | GeneOrGeneProduct | denotes | diabetes |
LitCoin-GeneOrGeneProduct-v2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T16 | 22-28 | GeneOrGeneProduct | denotes | PTPN22 |
| T17 | 127-131 | GeneOrGeneProduct | denotes | mRNA |
| T18 | 268-273 | GeneOrGeneProduct | denotes | major |
| T19 | 298-306 | GeneOrGeneProduct | denotes | diabetes |
LitCoin-Disease-MeSH
| Id | Subject | Object | Predicate | Lexical cue | originalLabel |
|---|---|---|---|---|---|
| T7 | 291-306 | DiseaseOrPhenotypicFeature | denotes | type 1 diabetes | D003922 |
LitCoin-GeneOrGeneProduct-v3
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T7 | 22-28 | GeneOrGeneProduct | denotes | PTPN22 |
LitCoin_Mondo_095
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T8 | 291-306 | DiseaseOrPhenotypicFeature | denotes | type 1 diabetes | 0005147 |
LitCoin-MeSH-Disease-2
| Id | Subject | Object | Predicate | Lexical cue | ID: |
|---|---|---|---|---|---|
| T7 | 291-306 | DiseaseOrPhenotypicFeature | denotes | type 1 diabetes | D003922 |
LitCoin-MONDO_bioort2019
| Id | Subject | Object | Predicate | Lexical cue | #label |
|---|---|---|---|---|---|
| T7 | 291-306 | DiseaseOrPhenotypicFeature | denotes | type 1 diabetes | D003922 |
LitCoin-training-merged
| Id | Subject | Object | Predicate | Lexical cue | #label |
|---|---|---|---|---|---|
| T7 | 22-28 | GeneOrGeneProduct | denotes | PTPN22 | |
| T6692 | 291-306 | DiseaseOrPhenotypicFeature | denotes | type 1 diabetes | D003922 |
| T67104 | 246-251 | SequenceVariant | denotes | 1858C |
DisGeNET
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T9 | 291-306 | disease:C0011854 | denotes | type 1 diabetes |
| T13 | 291-306 | disease:C0011854 | denotes | type 1 diabetes |
DisGeNET5_variant_disease
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 17003357-8#46#53#geners2476601 | 246-253 | geners2476601 | denotes | 1858C/T |
| 17003357-8#91#106#diseaseC0011854 | 291-306 | diseaseC0011854 | denotes | type 1 diabetes |
| 46#53#geners247660191#106#diseaseC0011854 | 17003357-8#46#53#geners2476601 | 17003357-8#91#106#diseaseC0011854 | associated_with | 1858C/T,type 1 diabetes |
DisGeNET5_gene_disease
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 17003357-0#50#65#diseaseC0011854 | 0-306 | diseaseC0011854 | denotes | titution. Analysis of PTPN22 transcripts from a subject heterozygous for this variant indicated that it interfered with normal mRNA splicing, resulting in a premature termination codon after exon 17. These results support the conclusion that the 1858C/T allele is the major risk variant for type 1 diabetes |
tmVarCorpus
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3 | 246-253 | DNAMutation:|SUB|C|1858|T | denotes | 1858C/T |