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PubMed:17000021 JSONTXT

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PubTator4TogoVar

Id Subject Object Predicate Lexical cue proteinmutation
17000021_0 260-265 ProteinMutation denotes R620W rs2476601
17000021_1 934-939 ProteinMutation denotes R620W rs2476601
17000021_2 1549-1572 ProteinMutation denotes (W) allele at codon 620 rs2476601
17000021_3 1751-1774 ProteinMutation denotes (R) allele at codon 620 rs2476601

TEST-DiseaseOrPhenotypicFeature

Id Subject Object Predicate Lexical cue #label
T1 93-108 DiseaseOrPhenotypicFeature denotes type 1 diabetes D003922
T2 113-142 DiseaseOrPhenotypicFeature denotes juvenile idiopathic arthritis D001171
T3 333-352 DiseaseOrPhenotypicFeature denotes autoimmune diseases D001327
T4 364-379 DiseaseOrPhenotypicFeature denotes type 1 diabetes D003922
T5 381-384 DiseaseOrPhenotypicFeature denotes T1D D003922
T6 390-419 DiseaseOrPhenotypicFeature denotes juvenile idiopathic arthritis D001171
T7 421-424 DiseaseOrPhenotypicFeature denotes JIA D001171
T8 789-792 DiseaseOrPhenotypicFeature denotes T1D D003922
T9 802-805 DiseaseOrPhenotypicFeature denotes JIA D001171
T10 823-826 DiseaseOrPhenotypicFeature denotes T1D D003922
T11 1049-1052 DiseaseOrPhenotypicFeature denotes T1D D003922
T12 1072-1075 DiseaseOrPhenotypicFeature denotes JIA D001171
T13 1144-1147 DiseaseOrPhenotypicFeature denotes T1D D003922
T14 1593-1596 DiseaseOrPhenotypicFeature denotes T1D D003922
T15 1672-1675 DiseaseOrPhenotypicFeature denotes JIA D001171

Test-SequenceVariant

Id Subject Object Predicate Lexical cue
T1 251-256 SequenceVariant denotes 1858C
T2 260-265 SequenceVariant denotes R620W
T3 381-384 SequenceVariant denotes T1D
T4 789-792 SequenceVariant denotes T1D
T5 823-826 SequenceVariant denotes T1D
T6 900-909 SequenceVariant denotes rs2488457
T7 919-928 SequenceVariant denotes rs2476601
T8 934-939 SequenceVariant denotes R620W
T9 966-975 SequenceVariant denotes rs1217412
T10 1049-1052 SequenceVariant denotes T1D
T11 1144-1147 SequenceVariant denotes T1D
T12 1593-1596 SequenceVariant denotes T1D

Test-GeneOrGeneProduct

Id Subject Object Predicate Lexical cue
T1 81-87 GeneOrGeneProduct denotes PTPN22
T2 113-121 GeneOrGeneProduct denotes juvenile
T3 191-197 GeneOrGeneProduct denotes PTPN22
T4 390-398 GeneOrGeneProduct denotes juvenile
T5 712-718 GeneOrGeneProduct denotes PTPN22
T6 1655-1658 GeneOrGeneProduct denotes 651
T7 2099-2105 GeneOrGeneProduct denotes PTPN22

Test-merged-2

Id Subject Object Predicate Lexical cue #label
T24388 251-256 SequenceVariant denotes 1858C
T283 260-265 SequenceVariant denotes R620W
T39204 381-384 SequenceVariant denotes T1D
T12775 789-792 SequenceVariant denotes T1D
T1630 823-826 SequenceVariant denotes T1D
T28162 900-909 SequenceVariant denotes rs2488457
T70152 919-928 SequenceVariant denotes rs2476601
T71319 934-939 SequenceVariant denotes R620W
T54624 966-975 SequenceVariant denotes rs1217412
T74869 1049-1052 SequenceVariant denotes T1D
T15155 1144-1147 SequenceVariant denotes T1D
T26704 1593-1596 SequenceVariant denotes T1D
T25130 81-87 GeneOrGeneProduct denotes PTPN22
T25881 113-121 GeneOrGeneProduct denotes juvenile
T14098 191-197 GeneOrGeneProduct denotes PTPN22
T67706 390-398 GeneOrGeneProduct denotes juvenile
T97672 712-718 GeneOrGeneProduct denotes PTPN22
T67161 1655-1658 GeneOrGeneProduct denotes 651
T10241 2099-2105 GeneOrGeneProduct denotes PTPN22
T1 93-108 DiseaseOrPhenotypicFeature denotes type 1 diabetes D003922
T2 113-142 DiseaseOrPhenotypicFeature denotes juvenile idiopathic arthritis D001171
T3 333-352 DiseaseOrPhenotypicFeature denotes autoimmune diseases D001327
T4 364-379 DiseaseOrPhenotypicFeature denotes type 1 diabetes D003922
T5 381-384 DiseaseOrPhenotypicFeature denotes T1D D003922
T6 390-419 DiseaseOrPhenotypicFeature denotes juvenile idiopathic arthritis D001171
T7 421-424 DiseaseOrPhenotypicFeature denotes JIA D001171
T8 789-792 DiseaseOrPhenotypicFeature denotes T1D D003922
T9 802-805 DiseaseOrPhenotypicFeature denotes JIA D001171
T10 823-826 DiseaseOrPhenotypicFeature denotes T1D D003922
T11 1049-1052 DiseaseOrPhenotypicFeature denotes T1D D003922
T12 1072-1075 DiseaseOrPhenotypicFeature denotes JIA D001171
T13 1144-1147 DiseaseOrPhenotypicFeature denotes T1D D003922
T14 1593-1596 DiseaseOrPhenotypicFeature denotes T1D D003922
T15 1672-1675 DiseaseOrPhenotypicFeature denotes JIA D001171

Test-merged

Id Subject Object Predicate Lexical cue #label
T15 1672-1675 DiseaseOrPhenotypicFeature denotes JIA D001171
T14 1593-1596 DiseaseOrPhenotypicFeature denotes T1D D003922
T13 1144-1147 DiseaseOrPhenotypicFeature denotes T1D D003922
T12 1072-1075 DiseaseOrPhenotypicFeature denotes JIA D001171
T11 1049-1052 DiseaseOrPhenotypicFeature denotes T1D D003922
T10 823-826 DiseaseOrPhenotypicFeature denotes T1D D003922
T9 802-805 DiseaseOrPhenotypicFeature denotes JIA D001171
T8 789-792 DiseaseOrPhenotypicFeature denotes T1D D003922
T7 421-424 DiseaseOrPhenotypicFeature denotes JIA D001171
T6 390-419 DiseaseOrPhenotypicFeature denotes juvenile idiopathic arthritis D001171
T5 381-384 DiseaseOrPhenotypicFeature denotes T1D D003922
T4 364-379 DiseaseOrPhenotypicFeature denotes type 1 diabetes D003922
T3 333-352 DiseaseOrPhenotypicFeature denotes autoimmune diseases D001327
T2 113-142 DiseaseOrPhenotypicFeature denotes juvenile idiopathic arthritis D001171
T1 93-108 DiseaseOrPhenotypicFeature denotes type 1 diabetes D003922
T10241 2099-2105 GeneOrGeneProduct denotes PTPN22
T67161 1655-1658 GeneOrGeneProduct denotes 651
T97672 712-718 GeneOrGeneProduct denotes PTPN22
T14098 191-197 GeneOrGeneProduct denotes PTPN22
T25130 81-87 GeneOrGeneProduct denotes PTPN22
T54624 966-975 SequenceVariant denotes rs1217412
T71319 934-939 SequenceVariant denotes R620W
T70152 919-928 SequenceVariant denotes rs2476601
T28162 900-909 SequenceVariant denotes rs2488457
T283 260-265 SequenceVariant denotes R620W
T24388 251-256 SequenceVariant denotes 1858C

DisGeNET

Id Subject Object Predicate Lexical cue
T0 712-718 gene:26191 denotes PTPN22
T1 789-792 disease:C0011854 denotes T1D
T2 712-718 gene:26191 denotes PTPN22
T3 802-805 disease:C3714757 denotes JIA
T4 712-718 gene:26191 denotes PTPN22
T5 802-805 disease:C3495559 denotes JIA
T6 712-718 gene:26191 denotes PTPN22
T7 823-826 disease:C0011854 denotes T1D
R1 T0 T1 associated_with PTPN22,T1D
R2 T2 T3 associated_with PTPN22,JIA
R3 T4 T5 associated_with PTPN22,JIA
R4 T6 T7 associated_with PTPN22,T1D

PubmedHPO

Id Subject Object Predicate Lexical cue
T1 333-352 HP_0002960 denotes autoimmune diseases
T2 333-343 HP_0002960 denotes autoimmune
T3 410-419 HP_0001369 denotes arthritis

DisGeNET5_variant_disease

Id Subject Object Predicate Lexical cue
17000021-2#14#19#geners2476601 260-265 geners2476601 denotes R620W
17000021-2#87#106#diseaseC0004364 333-352 diseaseC0004364 denotes autoimmune diseases
17000021-2#144#173#diseaseC3495559 390-419 diseaseC3495559 denotes juvenile idiopathic arthritis
17000021-2#175#178#diseaseC3495559 421-424 diseaseC3495559 denotes JIA
17000021-5#96#101#geners2476601 934-939 geners2476601 denotes R620W
17000021-5#62#71#geners2488457 900-909 geners2488457 denotes rs2488457
17000021-5#128#137#geners1217412 966-975 geners1217412 denotes rs1217412
17000021-5#81#90#geners2476601 919-928 geners2476601 denotes rs2476601
17000021-5#211#214#diseaseC0011854 1049-1052 diseaseC0011854 denotes T1D
17000021-5#306#309#diseaseC0011854 1144-1147 diseaseC0011854 denotes T1D
17000021-5#211#214#diseaseC0011854 1049-1052 diseaseC0011854 denotes T1D
14#19#geners247660187#106#diseaseC0004364 17000021-2#14#19#geners2476601 17000021-2#87#106#diseaseC0004364 associated_with R620W,autoimmune diseases
14#19#geners2476601144#173#diseaseC3495559 17000021-2#14#19#geners2476601 17000021-2#144#173#diseaseC3495559 associated_with R620W,juvenile idiopathic arthritis
14#19#geners2476601175#178#diseaseC3495559 17000021-2#14#19#geners2476601 17000021-2#175#178#diseaseC3495559 associated_with R620W,JIA
96#101#geners2476601211#214#diseaseC0011854 17000021-5#96#101#geners2476601 17000021-5#211#214#diseaseC0011854 associated_with R620W,T1D
96#101#geners2476601306#309#diseaseC0011854 17000021-5#96#101#geners2476601 17000021-5#306#309#diseaseC0011854 associated_with R620W,T1D
96#101#geners2476601211#214#diseaseC0011854 17000021-5#96#101#geners2476601 17000021-5#211#214#diseaseC0011854 associated_with R620W,T1D
62#71#geners2488457211#214#diseaseC0011854 17000021-5#62#71#geners2488457 17000021-5#211#214#diseaseC0011854 associated_with rs2488457,T1D
62#71#geners2488457306#309#diseaseC0011854 17000021-5#62#71#geners2488457 17000021-5#306#309#diseaseC0011854 associated_with rs2488457,T1D
62#71#geners2488457211#214#diseaseC0011854 17000021-5#62#71#geners2488457 17000021-5#211#214#diseaseC0011854 associated_with rs2488457,T1D
128#137#geners1217412211#214#diseaseC0011854 17000021-5#128#137#geners1217412 17000021-5#211#214#diseaseC0011854 associated_with rs1217412,T1D
128#137#geners1217412306#309#diseaseC0011854 17000021-5#128#137#geners1217412 17000021-5#306#309#diseaseC0011854 associated_with rs1217412,T1D
128#137#geners1217412211#214#diseaseC0011854 17000021-5#128#137#geners1217412 17000021-5#211#214#diseaseC0011854 associated_with rs1217412,T1D
81#90#geners2476601211#214#diseaseC0011854 17000021-5#81#90#geners2476601 17000021-5#211#214#diseaseC0011854 associated_with rs2476601,T1D
81#90#geners2476601306#309#diseaseC0011854 17000021-5#81#90#geners2476601 17000021-5#306#309#diseaseC0011854 associated_with rs2476601,T1D
81#90#geners2476601211#214#diseaseC0011854 17000021-5#81#90#geners2476601 17000021-5#211#214#diseaseC0011854 associated_with rs2476601,T1D

DisGeNET5_gene_disease

Id Subject Object Predicate Lexical cue
17000021-0#81#87#gene26191 81-87 gene26191 denotes PTPN22
17000021-0#81#87#gene26191 81-87 gene26191 denotes PTPN22
17000021-0#113#142#diseaseC3495559 113-142 diseaseC3495559 denotes juvenile idiopathic arthritis
17000021-0#113#142#diseaseC3714757 113-142 diseaseC3714757 denotes juvenile idiopathic arthritis
17000021-0#93#108#diseaseC0011854 93-108 diseaseC0011854 denotes type 1 diabetes
17000021-9#197#203#gene26191 2099-2105 gene26191 denotes PTPN22
17000021-9#241#253#diseaseC0004364 2143-2155 diseaseC0004364 denotes autoimmunity
81#87#gene26191113#142#diseaseC3495559 17000021-0#81#87#gene26191 17000021-0#113#142#diseaseC3495559 associated_with PTPN22,juvenile idiopathic arthritis
81#87#gene26191113#142#diseaseC3714757 17000021-0#81#87#gene26191 17000021-0#113#142#diseaseC3714757 associated_with PTPN22,juvenile idiopathic arthritis
81#87#gene2619193#108#diseaseC0011854 17000021-0#81#87#gene26191 17000021-0#93#108#diseaseC0011854 associated_with PTPN22,type 1 diabetes
81#87#gene26191113#142#diseaseC3495559 17000021-0#81#87#gene26191 17000021-0#113#142#diseaseC3495559 associated_with PTPN22,juvenile idiopathic arthritis
81#87#gene26191113#142#diseaseC3714757 17000021-0#81#87#gene26191 17000021-0#113#142#diseaseC3714757 associated_with PTPN22,juvenile idiopathic arthritis
81#87#gene2619193#108#diseaseC0011854 17000021-0#81#87#gene26191 17000021-0#93#108#diseaseC0011854 associated_with PTPN22,type 1 diabetes
197#203#gene26191241#253#diseaseC0004364 17000021-9#197#203#gene26191 17000021-9#241#253#diseaseC0004364 associated_with PTPN22,autoimmunity

tmVarCorpus

Id Subject Object Predicate Lexical cue
T1 27-36 DNAMutation:c|SUB|G|-1123|C denotes -1123 G>C
T2 40-49 DNAMutation:c|SUB|A|+2740|G denotes +2740 A>G
T3 250-258 DNAMutation:c|SUB|C|+1858|T denotes +1858C>T
T4 260-265 ProteinMutation:p|SUB|R|620|W denotes R620W
T5 900-909 SNP:rs2488457 denotes rs2488457
T6 919-928 SNP:rs2476601 denotes rs2476601
T7 934-939 ProteinMutation:p|SUB|R|620|W denotes R620W
T8 966-975 SNP:rs1217412 denotes rs1217412