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PubMed:16980326 JSONTXT

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Glycan-Motif

Id Subject Object Predicate Lexical cue
T1 376-387 https://glytoucan.org/Structures/Glycans/G43702JT denotes chondroitin
T2 668-679 https://glytoucan.org/Structures/Glycans/G43702JT denotes chondroitin
T3 986-997 https://glytoucan.org/Structures/Glycans/G43702JT denotes chondroitin

GlyCosmos6-Glycan-Motif-Image

Id Subject Object Predicate Lexical cue image
T1 376-387 Glycan_Motif denotes chondroitin https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G43702JT
T2 668-679 Glycan_Motif denotes chondroitin https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G43702JT
T3 986-997 Glycan_Motif denotes chondroitin https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G43702JT

GlyCosmos6-Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T1 376-387 https://glytoucan.org/Structures/Glycans/G43702JT denotes chondroitin
T2 668-679 https://glytoucan.org/Structures/Glycans/G43702JT denotes chondroitin
T3 986-997 https://glytoucan.org/Structures/Glycans/G43702JT denotes chondroitin

Glycosmos6-MAT

Id Subject Object Predicate Lexical cue
T1 74-83 http://purl.obolibrary.org/obo/MAT_0000189 denotes cartilage
T2 119-128 http://purl.obolibrary.org/obo/MAT_0000189 denotes cartilage
T3 160-177 http://purl.obolibrary.org/obo/MAT_0000301 denotes connective tissue
T4 717-726 http://purl.obolibrary.org/obo/MAT_0000189 denotes cartilage
T5 808-817 http://purl.obolibrary.org/obo/MAT_0000189 denotes cartilage
T6 1407-1416 http://purl.obolibrary.org/obo/MAT_0000189 denotes cartilage
T7 1479-1488 http://purl.obolibrary.org/obo/MAT_0000189 denotes cartilage
T8 1792-1809 http://purl.obolibrary.org/obo/MAT_0000301 denotes connective tissue

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-108 Sentence denotes Optimized extraction of glycosaminoglycans from normal and osteoarthritic cartilage for glycomics profiling.
TextSentencer_T2 109-366 Sentence denotes Articular cartilage is a highly specialized smooth connective tissue whose proper functioning depends on the maintenance of an extracellular matrix consisting of an integrated assembly of collagens, glycoproteins, proteoglycans (PG), and glycosaminoglycans.
TextSentencer_T3 367-564 Sentence denotes Isomeric chondroitin sulfate glycoforms differing in position and degree of sulfation and uronic acid epimerization play specific and distinct functional roles during development and disease onset.
TextSentencer_T4 565-761 Sentence denotes This work introduces a novel glycosaminoglycan extraction method for the quantification of mixtures of chondroitin sulfate oligosaccharides from intact cartilage tissue for mass spectral analysis.
TextSentencer_T5 762-975 Sentence denotes Glycosaminoglycans were extracted from intact cartilage samples using a combination of ethanol precipitation and enzymatic release followed by reversed-phase and strong anion exchange solid-phase extraction steps.
TextSentencer_T6 976-1258 Sentence denotes Extracted chondroitin sulfate glycosaminoglycans were partially depolymerized using chondroitinases, labeled with 2-anthranilic acid-d(4) (2-AA) and subjected to size exclusion chromatography with online electrospray ionization mass spectrometric detection in the negative ion mode.
TextSentencer_T7 1259-1425 Sentence denotes The method presented herein enabled simultaneous determination of sulfate position and uronic acid epimerization in juvenile bovine and adult human cartilage samples.
TextSentencer_T8 1426-1498 Sentence denotes The method was applied to a series of 13 adult human cartilage explants.
TextSentencer_T9 1499-1570 Sentence denotes Standard deviation of the mean for the measurements was 1.6 on average.
TextSentencer_T10 1571-1658 Sentence denotes Coefficients of variation were approximately 4% for all compositions of 40% or greater.
TextSentencer_T11 1659-1810 Sentence denotes These results show that the new method has sufficient accuracy to allow determination of topographical distribution of glycoforms in connective tissue.
T1 0-108 Sentence denotes Optimized extraction of glycosaminoglycans from normal and osteoarthritic cartilage for glycomics profiling.
T2 109-366 Sentence denotes Articular cartilage is a highly specialized smooth connective tissue whose proper functioning depends on the maintenance of an extracellular matrix consisting of an integrated assembly of collagens, glycoproteins, proteoglycans (PG), and glycosaminoglycans.
T3 367-564 Sentence denotes Isomeric chondroitin sulfate glycoforms differing in position and degree of sulfation and uronic acid epimerization play specific and distinct functional roles during development and disease onset.
T4 565-761 Sentence denotes This work introduces a novel glycosaminoglycan extraction method for the quantification of mixtures of chondroitin sulfate oligosaccharides from intact cartilage tissue for mass spectral analysis.
T5 762-975 Sentence denotes Glycosaminoglycans were extracted from intact cartilage samples using a combination of ethanol precipitation and enzymatic release followed by reversed-phase and strong anion exchange solid-phase extraction steps.
T6 976-1258 Sentence denotes Extracted chondroitin sulfate glycosaminoglycans were partially depolymerized using chondroitinases, labeled with 2-anthranilic acid-d(4) (2-AA) and subjected to size exclusion chromatography with online electrospray ionization mass spectrometric detection in the negative ion mode.
T7 1259-1425 Sentence denotes The method presented herein enabled simultaneous determination of sulfate position and uronic acid epimerization in juvenile bovine and adult human cartilage samples.
T8 1426-1498 Sentence denotes The method was applied to a series of 13 adult human cartilage explants.
T9 1499-1570 Sentence denotes Standard deviation of the mean for the measurements was 1.6 on average.
T10 1571-1658 Sentence denotes Coefficients of variation were approximately 4% for all compositions of 40% or greater.
T11 1659-1810 Sentence denotes These results show that the new method has sufficient accuracy to allow determination of topographical distribution of glycoforms in connective tissue.
T1 0-108 Sentence denotes Optimized extraction of glycosaminoglycans from normal and osteoarthritic cartilage for glycomics profiling.
T2 109-366 Sentence denotes Articular cartilage is a highly specialized smooth connective tissue whose proper functioning depends on the maintenance of an extracellular matrix consisting of an integrated assembly of collagens, glycoproteins, proteoglycans (PG), and glycosaminoglycans.
T3 367-564 Sentence denotes Isomeric chondroitin sulfate glycoforms differing in position and degree of sulfation and uronic acid epimerization play specific and distinct functional roles during development and disease onset.
T4 565-761 Sentence denotes This work introduces a novel glycosaminoglycan extraction method for the quantification of mixtures of chondroitin sulfate oligosaccharides from intact cartilage tissue for mass spectral analysis.
T5 762-975 Sentence denotes Glycosaminoglycans were extracted from intact cartilage samples using a combination of ethanol precipitation and enzymatic release followed by reversed-phase and strong anion exchange solid-phase extraction steps.
T6 976-1258 Sentence denotes Extracted chondroitin sulfate glycosaminoglycans were partially depolymerized using chondroitinases, labeled with 2-anthranilic acid-d(4) (2-AA) and subjected to size exclusion chromatography with online electrospray ionization mass spectrometric detection in the negative ion mode.
T7 1259-1425 Sentence denotes The method presented herein enabled simultaneous determination of sulfate position and uronic acid epimerization in juvenile bovine and adult human cartilage samples.
T8 1426-1498 Sentence denotes The method was applied to a series of 13 adult human cartilage explants.
T9 1499-1570 Sentence denotes Standard deviation of the mean for the measurements was 1.6 on average.
T10 1571-1658 Sentence denotes Coefficients of variation were approximately 4% for all compositions of 40% or greater.
T11 1659-1810 Sentence denotes These results show that the new method has sufficient accuracy to allow determination of topographical distribution of glycoforms in connective tissue.

Glycosmos6-GlycoEpitope

Id Subject Object Predicate Lexical cue
T1 376-387 http://www.glycoepitope.jp/epitopes/EP0081 denotes chondroitin
T2 668-679 http://www.glycoepitope.jp/epitopes/EP0081 denotes chondroitin
T3 986-997 http://www.glycoepitope.jp/epitopes/EP0081 denotes chondroitin

uniprot-human

Id Subject Object Predicate Lexical cue
T1 1060-1075 http://www.uniprot.org/uniprot/P34059 denotes chondroitinases

uniprot-mouse

Id Subject Object Predicate Lexical cue
T1 1060-1075 http://www.uniprot.org/uniprot/Q571E4 denotes chondroitinases

GlycoBiology-NCBITAXON

Id Subject Object Predicate Lexical cue
T1 171-177 http://purl.bioontology.org/ontology/STY/T024 denotes tissue
T2 727-733 http://purl.bioontology.org/ontology/STY/T024 denotes tissue
T3 1117-1119 http://purl.bioontology.org/ontology/NCBITAXON/152839 denotes AA
T4 1803-1809 http://purl.bioontology.org/ontology/STY/T024 denotes tissue

GO-BP

Id Subject Object Predicate Lexical cue
T1 388-395 http://purl.obolibrary.org/obo/GO_0051923 denotes sulfate
T2 680-687 http://purl.obolibrary.org/obo/GO_0051923 denotes sulfate
T3 998-1005 http://purl.obolibrary.org/obo/GO_0051923 denotes sulfate
T4 443-452 http://purl.obolibrary.org/obo/GO_0051923 denotes sulfation
T5 534-545 http://purl.obolibrary.org/obo/GO_0032502 denotes development
T6 937-945 http://purl.obolibrary.org/obo/GO_0015297 denotes exchange
T7 1060-1075 http://purl.obolibrary.org/obo/GO_0043890 denotes chondroitinases

GO-CC

Id Subject Object Predicate Lexical cue
T1 236-249 http://purl.obolibrary.org/obo/GO_0005576 denotes extracellular
T2 236-256 http://purl.obolibrary.org/obo/GO_0031012 denotes extracellular matrix
T3 338-340 http://purl.obolibrary.org/obo/GO_0010287 denotes PG

UBERON-AE

Id Subject Object Predicate Lexical cue
T1 160-177 http://purl.obolibrary.org/obo/UBERON_0002384 denotes connective tissue
T2 1792-1809 http://purl.obolibrary.org/obo/UBERON_0002384 denotes connective tissue
T3 171-177 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissue
T4 727-733 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissue
T5 1803-1809 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissue
T6 717-733 http://purl.obolibrary.org/obo/UBERON_0002418 denotes cartilage tissue

GlycoBiology-MAT

Id Subject Object Predicate Lexical cue
T1 74-83 http://purl.obolibrary.org/obo/MAT_0000189 denotes cartilage
T2 119-128 http://purl.obolibrary.org/obo/MAT_0000189 denotes cartilage
T3 160-177 http://purl.obolibrary.org/obo/MAT_0000301 denotes connective tissue
T4 717-726 http://purl.obolibrary.org/obo/MAT_0000189 denotes cartilage
T5 808-817 http://purl.obolibrary.org/obo/MAT_0000189 denotes cartilage
T6 1407-1416 http://purl.obolibrary.org/obo/MAT_0000189 denotes cartilage
T7 1479-1488 http://purl.obolibrary.org/obo/MAT_0000189 denotes cartilage
T8 1792-1809 http://purl.obolibrary.org/obo/MAT_0000301 denotes connective tissue

GlycoBiology-Motifs

Id Subject Object Predicate Lexical cue
T1 376-387 http://rdf.glycoinfo.org/glycan/G00018MO denotes chondroitin
T2 668-679 http://rdf.glycoinfo.org/glycan/G00018MO denotes chondroitin
T3 986-997 http://rdf.glycoinfo.org/glycan/G00018MO denotes chondroitin
T4 376-395 http://rdf.glycoinfo.org/glycan/G00018MO denotes chondroitin sulfate
T5 668-687 http://rdf.glycoinfo.org/glycan/G00018MO denotes chondroitin sulfate
T6 986-1005 http://rdf.glycoinfo.org/glycan/G00018MO denotes chondroitin sulfate

GlycoBiology-Epitope

Id Subject Object Predicate Lexical cue
PD-GlycoEpitope-B_T1 1077-1084 id denotes labeled
PD-GlycoEpitope-B_T2 376-387 http://www.glycoepitope.jp/epitopes/EP0081 denotes chondroitin
PD-GlycoEpitope-B_T3 668-679 http://www.glycoepitope.jp/epitopes/EP0081 denotes chondroitin
PD-GlycoEpitope-B_T4 986-997 http://www.glycoepitope.jp/epitopes/EP0081 denotes chondroitin

GlyTouCan-IUPAC

Id Subject Object Predicate Lexical cue
GlycanIUPAC_T1 1623-1626 "http://rdf.glycoinfo.org/glycan/G41652MJ" denotes all
GlycanIUPAC_T2 1623-1626 "http://rdf.glycoinfo.org/glycan/G20761YC" denotes all
GlycanIUPAC_T3 1623-1626 "http://rdf.glycoinfo.org/glycan/G19807HM" denotes all
GlycanIUPAC_T4 1623-1626 "http://rdf.glycoinfo.org/glycan/G20351TE" denotes all
GlycanIUPAC_T5 1623-1626 "http://rdf.glycoinfo.org/glycan/G71957MR" denotes all
GlycanIUPAC_T6 1623-1626 "http://rdf.glycoinfo.org/glycan/G59040AE" denotes all
GlycanIUPAC_T7 1623-1626 "http://rdf.glycoinfo.org/glycan/G14987PW" denotes all
GlycanIUPAC_T8 1623-1626 "http://rdf.glycoinfo.org/glycan/G95064PC" denotes all
GlycanIUPAC_T9 1623-1626 "http://rdf.glycoinfo.org/glycan/G39143AQ" denotes all
GlycanIUPAC_T10 1623-1626 "http://rdf.glycoinfo.org/glycan/G65149OO" denotes all
GlycanIUPAC_T11 1623-1626 "http://rdf.glycoinfo.org/glycan/G02766SY" denotes all
GlycanIUPAC_T12 1623-1626 "http://rdf.glycoinfo.org/glycan/G26019KJ" denotes all
GlycanIUPAC_T13 1623-1626 "http://rdf.glycoinfo.org/glycan/G36429CZ" denotes all
GlycanIUPAC_T14 1623-1626 "http://rdf.glycoinfo.org/glycan/G89633TP" denotes all
GlycanIUPAC_T15 1623-1626 "http://rdf.glycoinfo.org/glycan/G28494FO" denotes all
GlycanIUPAC_T16 1623-1626 "http://rdf.glycoinfo.org/glycan/G06219CP" denotes all
GlycanIUPAC_T17 1623-1626 "http://rdf.glycoinfo.org/glycan/G44237SM" denotes all
GlycanIUPAC_T18 1623-1626 "http://rdf.glycoinfo.org/glycan/G57948RL" denotes all
GlycanIUPAC_T19 1623-1626 "http://rdf.glycoinfo.org/glycan/G64016DN" denotes all
GlycanIUPAC_T20 1623-1626 "http://rdf.glycoinfo.org/glycan/G14536PC" denotes all
GlycanIUPAC_T21 1623-1626 "http://rdf.glycoinfo.org/glycan/G14356FW" denotes all
GlycanIUPAC_T22 1623-1626 "http://rdf.glycoinfo.org/glycan/G34565UO" denotes all
GlycanIUPAC_T23 1623-1626 "http://rdf.glycoinfo.org/glycan/G67124MW" denotes all
GlycanIUPAC_T24 1623-1626 "http://rdf.glycoinfo.org/glycan/G71457ZU" denotes all
GlycanIUPAC_T25 1623-1626 "http://rdf.glycoinfo.org/glycan/G55228VZ" denotes all
GlycanIUPAC_T26 1623-1626 "http://rdf.glycoinfo.org/glycan/G31034MJ" denotes all
GlycanIUPAC_T27 1623-1626 "http://rdf.glycoinfo.org/glycan/G25776IP" denotes all
GlycanIUPAC_T28 1623-1626 "http://rdf.glycoinfo.org/glycan/G64442BV" denotes all
GlycanIUPAC_T29 1623-1626 "http://rdf.glycoinfo.org/glycan/G57018LE" denotes all
GlycanIUPAC_T30 1623-1626 "http://rdf.glycoinfo.org/glycan/G61761GX" denotes all
GlycanIUPAC_T31 1623-1626 "http://rdf.glycoinfo.org/glycan/G76318UX" denotes all
GlycanIUPAC_T32 1623-1626 "http://rdf.glycoinfo.org/glycan/G61906ER" denotes all
GlycanIUPAC_T33 1623-1626 "http://rdf.glycoinfo.org/glycan/G68723GR" denotes all
GlycanIUPAC_T34 1623-1626 "http://rdf.glycoinfo.org/glycan/G19540LE" denotes all
GlycanIUPAC_T35 1623-1626 "http://rdf.glycoinfo.org/glycan/G74944PO" denotes all
GlycanIUPAC_T36 1623-1626 "http://rdf.glycoinfo.org/glycan/G89489ZJ" denotes all
GlycanIUPAC_T37 1623-1626 "http://rdf.glycoinfo.org/glycan/G04434YU" denotes all
GlycanIUPAC_T38 1623-1626 "http://rdf.glycoinfo.org/glycan/G21450PB" denotes all
GlycanIUPAC_T39 1623-1626 "http://rdf.glycoinfo.org/glycan/G93629QY" denotes all
GlycanIUPAC_T40 1623-1626 "http://rdf.glycoinfo.org/glycan/G02603TR" denotes all
GlycanIUPAC_T41 1623-1626 "http://rdf.glycoinfo.org/glycan/G40280JP" denotes all
GlycanIUPAC_T42 1623-1626 "http://rdf.glycoinfo.org/glycan/G95259IC" denotes all
GlycanIUPAC_T43 1623-1626 "http://rdf.glycoinfo.org/glycan/G26900FE" denotes all
GlycanIUPAC_T44 1623-1626 "http://rdf.glycoinfo.org/glycan/G21346KK" denotes all
GlycanIUPAC_T45 1623-1626 "http://rdf.glycoinfo.org/glycan/G62509FF" denotes all
GlycanIUPAC_T46 1623-1626 "http://rdf.glycoinfo.org/glycan/G83932AK" denotes all
GlycanIUPAC_T47 1623-1626 "http://rdf.glycoinfo.org/glycan/G96978IB" denotes all
GlycanIUPAC_T48 1623-1626 "http://rdf.glycoinfo.org/glycan/G34275DN" denotes all
GlycanIUPAC_T49 1623-1626 "http://rdf.glycoinfo.org/glycan/G07071JF" denotes all
GlycanIUPAC_T50 1623-1626 "http://rdf.glycoinfo.org/glycan/G80639QD" denotes all
GlycanIUPAC_T51 1623-1626 "http://rdf.glycoinfo.org/glycan/G99460PJ" denotes all
GlycanIUPAC_T52 1623-1626 "http://rdf.glycoinfo.org/glycan/G22024BZ" denotes all
GlycanIUPAC_T53 1623-1626 "http://rdf.glycoinfo.org/glycan/G74097ZY" denotes all
GlycanIUPAC_T54 1623-1626 "http://rdf.glycoinfo.org/glycan/G84439YP" denotes all
GlycanIUPAC_T55 1623-1626 "http://rdf.glycoinfo.org/glycan/G52207WQ" denotes all
GlycanIUPAC_T56 1623-1626 "http://rdf.glycoinfo.org/glycan/G90695MS" denotes all
GlycanIUPAC_T57 1623-1626 "http://rdf.glycoinfo.org/glycan/G50398QX" denotes all
GlycanIUPAC_T58 1623-1626 "http://rdf.glycoinfo.org/glycan/G12166ZT" denotes all
GlycanIUPAC_T59 1623-1626 "http://rdf.glycoinfo.org/glycan/G48368BR" denotes all
GlycanIUPAC_T60 1623-1626 "http://rdf.glycoinfo.org/glycan/G57407RW" denotes all
GlycanIUPAC_T61 1623-1626 "http://rdf.glycoinfo.org/glycan/G00386TY" denotes all
GlycanIUPAC_T62 1623-1626 "http://rdf.glycoinfo.org/glycan/G18723JK" denotes all
GlycanIUPAC_T63 1623-1626 "http://rdf.glycoinfo.org/glycan/G93757OR" denotes all
GlycanIUPAC_T64 1623-1626 "http://rdf.glycoinfo.org/glycan/G29006SI" denotes all
GlycanIUPAC_T65 1623-1626 "http://rdf.glycoinfo.org/glycan/G03099OQ" denotes all
GlycanIUPAC_T66 1623-1626 "http://rdf.glycoinfo.org/glycan/G53739OW" denotes all
GlycanIUPAC_T67 1623-1626 "http://rdf.glycoinfo.org/glycan/G70440ZO" denotes all
GlycanIUPAC_T68 1623-1626 "http://rdf.glycoinfo.org/glycan/G29951RR" denotes all
GlycanIUPAC_T69 1623-1626 "http://rdf.glycoinfo.org/glycan/G58402TI" denotes all
GlycanIUPAC_T70 1623-1626 "http://rdf.glycoinfo.org/glycan/G39875TP" denotes all
GlycanIUPAC_T71 1623-1626 "http://rdf.glycoinfo.org/glycan/G83439QV" denotes all
GlycanIUPAC_T72 1623-1626 "http://rdf.glycoinfo.org/glycan/G41762RC" denotes all
GlycanIUPAC_T73 1623-1626 "http://rdf.glycoinfo.org/glycan/G91604UI" denotes all
GlycanIUPAC_T74 1623-1626 "http://rdf.glycoinfo.org/glycan/G88447WE" denotes all
GlycanIUPAC_T75 1623-1626 "http://rdf.glycoinfo.org/glycan/G93634BS" denotes all
GlycanIUPAC_T76 1623-1626 "http://rdf.glycoinfo.org/glycan/G02587BH" denotes all
GlycanIUPAC_T77 1623-1626 "http://rdf.glycoinfo.org/glycan/G43511MX" denotes all
GlycanIUPAC_T78 1623-1626 "http://rdf.glycoinfo.org/glycan/G64958DH" denotes all
GlycanIUPAC_T79 1623-1626 "http://rdf.glycoinfo.org/glycan/G30384TR" denotes all
GlycanIUPAC_T80 1623-1626 "http://rdf.glycoinfo.org/glycan/G15624EX" denotes all
GlycanIUPAC_T81 1623-1626 "http://rdf.glycoinfo.org/glycan/G22706ST" denotes all
GlycanIUPAC_T82 1623-1626 "http://rdf.glycoinfo.org/glycan/G57408PI" denotes all
GlycanIUPAC_T83 1623-1626 "http://rdf.glycoinfo.org/glycan/G86403XX" denotes all
GlycanIUPAC_T84 1623-1626 "http://rdf.glycoinfo.org/glycan/G78043YB" denotes all
GlycanIUPAC_T85 1623-1626 "http://rdf.glycoinfo.org/glycan/G18952JK" denotes all
GlycanIUPAC_T86 1623-1626 "http://rdf.glycoinfo.org/glycan/G49020ND" denotes all
GlycanIUPAC_T87 1623-1626 "http://rdf.glycoinfo.org/glycan/G63590YW" denotes all
GlycanIUPAC_T88 1623-1626 "http://rdf.glycoinfo.org/glycan/G22793KS" denotes all
GlycanIUPAC_T89 1623-1626 "http://rdf.glycoinfo.org/glycan/G64134SS" denotes all
GlycanIUPAC_T90 1623-1626 "http://rdf.glycoinfo.org/glycan/G17338HY" denotes all
GlycanIUPAC_T91 1623-1626 "http://rdf.glycoinfo.org/glycan/G99745XF" denotes all
GlycanIUPAC_T92 1623-1626 "http://rdf.glycoinfo.org/glycan/G27782HN" denotes all
GlycanIUPAC_T93 1623-1626 "http://rdf.glycoinfo.org/glycan/G57496DC" denotes all
GlycanIUPAC_T94 1623-1626 "http://rdf.glycoinfo.org/glycan/G93169WB" denotes all
GlycanIUPAC_T95 1623-1626 "http://rdf.glycoinfo.org/glycan/G05518TD" denotes all
GlycanIUPAC_T96 1623-1626 "http://rdf.glycoinfo.org/glycan/G62603DN" denotes all
GlycanIUPAC_T97 1623-1626 "http://rdf.glycoinfo.org/glycan/G59574FS" denotes all
GlycanIUPAC_T98 1623-1626 "http://rdf.glycoinfo.org/glycan/G47567WC" denotes all

performance-test

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 171-177 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissue
PD-UBERON-AE-B_T2 727-733 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissue
PD-UBERON-AE-B_T3 1803-1809 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissue
PD-UBERON-AE-B_T4 160-177 http://purl.obolibrary.org/obo/UBERON_0002384 denotes connective tissue
PD-UBERON-AE-B_T5 1792-1809 http://purl.obolibrary.org/obo/UBERON_0002384 denotes connective tissue
PD-UBERON-AE-B_T6 717-733 http://purl.obolibrary.org/obo/UBERON_0002418 denotes cartilage tissue

Anatomy-MAT

Id Subject Object Predicate Lexical cue mat_id
T1 74-83 Body_part denotes cartilage http://purl.obolibrary.org/obo/MAT_0000189
T2 119-128 Body_part denotes cartilage http://purl.obolibrary.org/obo/MAT_0000189
T3 160-177 Body_part denotes connective tissue http://purl.obolibrary.org/obo/MAT_0000301
T4 717-726 Body_part denotes cartilage http://purl.obolibrary.org/obo/MAT_0000189
T5 808-817 Body_part denotes cartilage http://purl.obolibrary.org/obo/MAT_0000189
T6 1407-1416 Body_part denotes cartilage http://purl.obolibrary.org/obo/MAT_0000189
T7 1479-1488 Body_part denotes cartilage http://purl.obolibrary.org/obo/MAT_0000189
T8 1792-1809 Body_part denotes connective tissue http://purl.obolibrary.org/obo/MAT_0000301

Glycan-GlyCosmos

Id Subject Object Predicate Lexical cue image
T1 376-387 Glycan denotes chondroitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G43702JT
T2 668-679 Glycan denotes chondroitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G43702JT
T3 986-997 Glycan denotes chondroitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G43702JT

GlyCosmos15-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 74-83 Body_part denotes cartilage http://purl.obolibrary.org/obo/UBERON_0002418|http://purl.obolibrary.org/obo/UBERON_0007844
T3 109-128 Body_part denotes Articular cartilage http://purl.obolibrary.org/obo/UBERON_0010996
T4 160-177 Body_part denotes connective tissue http://purl.obolibrary.org/obo/UBERON_0002384
T5 236-256 Body_part denotes extracellular matrix http://purl.obolibrary.org/obo/GO_0031012
T6 717-733 Body_part denotes cartilage tissue http://purl.obolibrary.org/obo/UBERON_0002418
T7 808-817 Body_part denotes cartilage http://purl.obolibrary.org/obo/UBERON_0002418|http://purl.obolibrary.org/obo/UBERON_0007844
T9 1375-1383 Body_part denotes juvenile http://purl.obolibrary.org/obo/UBERON_0007021
T10 1407-1416 Body_part denotes cartilage http://purl.obolibrary.org/obo/UBERON_0002418|http://purl.obolibrary.org/obo/UBERON_0007844
T12 1479-1488 Body_part denotes cartilage http://purl.obolibrary.org/obo/UBERON_0002418|http://purl.obolibrary.org/obo/UBERON_0007844
T14 1792-1809 Body_part denotes connective tissue http://purl.obolibrary.org/obo/UBERON_0002384

GlyCosmos15-NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 1384-1390 OrganismTaxon denotes bovine 9913
T2 1401-1406 OrganismTaxon denotes human 9606
T3 1473-1478 OrganismTaxon denotes human 9606

GlyCosmos15-MAT

Id Subject Object Predicate Lexical cue mat_id
T1 74-83 Body_part denotes cartilage http://purl.obolibrary.org/obo/MAT_0000189
T2 119-128 Body_part denotes cartilage http://purl.obolibrary.org/obo/MAT_0000189
T3 160-177 Body_part denotes connective tissue http://purl.obolibrary.org/obo/MAT_0000301
T4 717-726 Body_part denotes cartilage http://purl.obolibrary.org/obo/MAT_0000189
T5 808-817 Body_part denotes cartilage http://purl.obolibrary.org/obo/MAT_0000189
T6 1407-1416 Body_part denotes cartilage http://purl.obolibrary.org/obo/MAT_0000189
T7 1479-1488 Body_part denotes cartilage http://purl.obolibrary.org/obo/MAT_0000189
T8 1792-1809 Body_part denotes connective tissue http://purl.obolibrary.org/obo/MAT_0000301

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-108 Sentence denotes Optimized extraction of glycosaminoglycans from normal and osteoarthritic cartilage for glycomics profiling.
TextSentencer_T2 109-366 Sentence denotes Articular cartilage is a highly specialized smooth connective tissue whose proper functioning depends on the maintenance of an extracellular matrix consisting of an integrated assembly of collagens, glycoproteins, proteoglycans (PG), and glycosaminoglycans.
TextSentencer_T3 367-564 Sentence denotes Isomeric chondroitin sulfate glycoforms differing in position and degree of sulfation and uronic acid epimerization play specific and distinct functional roles during development and disease onset.
TextSentencer_T4 565-761 Sentence denotes This work introduces a novel glycosaminoglycan extraction method for the quantification of mixtures of chondroitin sulfate oligosaccharides from intact cartilage tissue for mass spectral analysis.
TextSentencer_T5 762-975 Sentence denotes Glycosaminoglycans were extracted from intact cartilage samples using a combination of ethanol precipitation and enzymatic release followed by reversed-phase and strong anion exchange solid-phase extraction steps.
TextSentencer_T6 976-1258 Sentence denotes Extracted chondroitin sulfate glycosaminoglycans were partially depolymerized using chondroitinases, labeled with 2-anthranilic acid-d(4) (2-AA) and subjected to size exclusion chromatography with online electrospray ionization mass spectrometric detection in the negative ion mode.
TextSentencer_T7 1259-1425 Sentence denotes The method presented herein enabled simultaneous determination of sulfate position and uronic acid epimerization in juvenile bovine and adult human cartilage samples.
TextSentencer_T8 1426-1498 Sentence denotes The method was applied to a series of 13 adult human cartilage explants.
TextSentencer_T9 1499-1570 Sentence denotes Standard deviation of the mean for the measurements was 1.6 on average.
TextSentencer_T10 1571-1658 Sentence denotes Coefficients of variation were approximately 4% for all compositions of 40% or greater.
TextSentencer_T11 1659-1810 Sentence denotes These results show that the new method has sufficient accuracy to allow determination of topographical distribution of glycoforms in connective tissue.
T1 0-108 Sentence denotes Optimized extraction of glycosaminoglycans from normal and osteoarthritic cartilage for glycomics profiling.
T2 109-366 Sentence denotes Articular cartilage is a highly specialized smooth connective tissue whose proper functioning depends on the maintenance of an extracellular matrix consisting of an integrated assembly of collagens, glycoproteins, proteoglycans (PG), and glycosaminoglycans.
T3 367-564 Sentence denotes Isomeric chondroitin sulfate glycoforms differing in position and degree of sulfation and uronic acid epimerization play specific and distinct functional roles during development and disease onset.
T4 565-761 Sentence denotes This work introduces a novel glycosaminoglycan extraction method for the quantification of mixtures of chondroitin sulfate oligosaccharides from intact cartilage tissue for mass spectral analysis.
T5 762-975 Sentence denotes Glycosaminoglycans were extracted from intact cartilage samples using a combination of ethanol precipitation and enzymatic release followed by reversed-phase and strong anion exchange solid-phase extraction steps.
T6 976-1258 Sentence denotes Extracted chondroitin sulfate glycosaminoglycans were partially depolymerized using chondroitinases, labeled with 2-anthranilic acid-d(4) (2-AA) and subjected to size exclusion chromatography with online electrospray ionization mass spectrometric detection in the negative ion mode.
T7 1259-1425 Sentence denotes The method presented herein enabled simultaneous determination of sulfate position and uronic acid epimerization in juvenile bovine and adult human cartilage samples.
T8 1426-1498 Sentence denotes The method was applied to a series of 13 adult human cartilage explants.
T9 1499-1570 Sentence denotes Standard deviation of the mean for the measurements was 1.6 on average.
T10 1571-1658 Sentence denotes Coefficients of variation were approximately 4% for all compositions of 40% or greater.
T11 1659-1810 Sentence denotes These results show that the new method has sufficient accuracy to allow determination of topographical distribution of glycoforms in connective tissue.
T1 0-108 Sentence denotes Optimized extraction of glycosaminoglycans from normal and osteoarthritic cartilage for glycomics profiling.
T2 109-366 Sentence denotes Articular cartilage is a highly specialized smooth connective tissue whose proper functioning depends on the maintenance of an extracellular matrix consisting of an integrated assembly of collagens, glycoproteins, proteoglycans (PG), and glycosaminoglycans.
T3 367-564 Sentence denotes Isomeric chondroitin sulfate glycoforms differing in position and degree of sulfation and uronic acid epimerization play specific and distinct functional roles during development and disease onset.
T4 565-761 Sentence denotes This work introduces a novel glycosaminoglycan extraction method for the quantification of mixtures of chondroitin sulfate oligosaccharides from intact cartilage tissue for mass spectral analysis.
T5 762-975 Sentence denotes Glycosaminoglycans were extracted from intact cartilage samples using a combination of ethanol precipitation and enzymatic release followed by reversed-phase and strong anion exchange solid-phase extraction steps.
T6 976-1258 Sentence denotes Extracted chondroitin sulfate glycosaminoglycans were partially depolymerized using chondroitinases, labeled with 2-anthranilic acid-d(4) (2-AA) and subjected to size exclusion chromatography with online electrospray ionization mass spectrometric detection in the negative ion mode.
T7 1259-1425 Sentence denotes The method presented herein enabled simultaneous determination of sulfate position and uronic acid epimerization in juvenile bovine and adult human cartilage samples.
T8 1426-1498 Sentence denotes The method was applied to a series of 13 adult human cartilage explants.
T9 1499-1570 Sentence denotes Standard deviation of the mean for the measurements was 1.6 on average.
T10 1571-1658 Sentence denotes Coefficients of variation were approximately 4% for all compositions of 40% or greater.
T11 1659-1810 Sentence denotes These results show that the new method has sufficient accuracy to allow determination of topographical distribution of glycoforms in connective tissue.

GlyCosmos15-Sentences

Id Subject Object Predicate Lexical cue
T1 0-108 Sentence denotes Optimized extraction of glycosaminoglycans from normal and osteoarthritic cartilage for glycomics profiling.
T2 109-366 Sentence denotes Articular cartilage is a highly specialized smooth connective tissue whose proper functioning depends on the maintenance of an extracellular matrix consisting of an integrated assembly of collagens, glycoproteins, proteoglycans (PG), and glycosaminoglycans.
T3 367-564 Sentence denotes Isomeric chondroitin sulfate glycoforms differing in position and degree of sulfation and uronic acid epimerization play specific and distinct functional roles during development and disease onset.
T4 565-761 Sentence denotes This work introduces a novel glycosaminoglycan extraction method for the quantification of mixtures of chondroitin sulfate oligosaccharides from intact cartilage tissue for mass spectral analysis.
T5 762-975 Sentence denotes Glycosaminoglycans were extracted from intact cartilage samples using a combination of ethanol precipitation and enzymatic release followed by reversed-phase and strong anion exchange solid-phase extraction steps.
T6 976-1258 Sentence denotes Extracted chondroitin sulfate glycosaminoglycans were partially depolymerized using chondroitinases, labeled with 2-anthranilic acid-d(4) (2-AA) and subjected to size exclusion chromatography with online electrospray ionization mass spectrometric detection in the negative ion mode.
T7 1259-1425 Sentence denotes The method presented herein enabled simultaneous determination of sulfate position and uronic acid epimerization in juvenile bovine and adult human cartilage samples.
T8 1426-1498 Sentence denotes The method was applied to a series of 13 adult human cartilage explants.
T9 1499-1570 Sentence denotes Standard deviation of the mean for the measurements was 1.6 on average.
T10 1571-1658 Sentence denotes Coefficients of variation were approximately 4% for all compositions of 40% or greater.
T11 1659-1810 Sentence denotes These results show that the new method has sufficient accuracy to allow determination of topographical distribution of glycoforms in connective tissue.

GlyCosmos15-Glycan

Id Subject Object Predicate Lexical cue image
T1 376-387 Glycan denotes chondroitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G43702JT
T2 668-679 Glycan denotes chondroitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G43702JT
T3 986-997 Glycan denotes chondroitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G43702JT

GlyCosmos15-GlycoEpitope

Id Subject Object Predicate Lexical cue glycoepitope_id
T1 376-387 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes chondroitin http://www.glycoepitope.jp/epitopes/EP0081
T2 668-679 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes chondroitin http://www.glycoepitope.jp/epitopes/EP0081
T3 986-997 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes chondroitin http://www.glycoepitope.jp/epitopes/EP0081

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 1384-1390 OrganismTaxon denotes bovine 9913
T2 1401-1406 OrganismTaxon denotes human 9606
T3 1473-1478 OrganismTaxon denotes human 9606

GlyCosmos-GlycoEpitope

Id Subject Object Predicate Lexical cue glycoepitope_id
T1 376-387 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes chondroitin http://www.glycoepitope.jp/epitopes/EP0081
T2 668-679 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes chondroitin http://www.glycoepitope.jp/epitopes/EP0081
T3 986-997 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes chondroitin http://www.glycoepitope.jp/epitopes/EP0081

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 74-83 Body_part denotes cartilage http://purl.obolibrary.org/obo/UBERON_0002418|http://purl.obolibrary.org/obo/UBERON_0007844
T3 109-128 Body_part denotes Articular cartilage http://purl.obolibrary.org/obo/UBERON_0010996
T4 160-177 Body_part denotes connective tissue http://purl.obolibrary.org/obo/UBERON_0002384
T5 236-256 Body_part denotes extracellular matrix http://purl.obolibrary.org/obo/GO_0031012
T6 717-733 Body_part denotes cartilage tissue http://purl.obolibrary.org/obo/UBERON_0002418
T7 808-817 Body_part denotes cartilage http://purl.obolibrary.org/obo/UBERON_0002418|http://purl.obolibrary.org/obo/UBERON_0007844
T9 1375-1383 Body_part denotes juvenile http://purl.obolibrary.org/obo/UBERON_0007021
T10 1407-1416 Body_part denotes cartilage http://purl.obolibrary.org/obo/UBERON_0002418|http://purl.obolibrary.org/obo/UBERON_0007844
T12 1479-1488 Body_part denotes cartilage http://purl.obolibrary.org/obo/UBERON_0002418|http://purl.obolibrary.org/obo/UBERON_0007844
T14 1792-1809 Body_part denotes connective tissue http://purl.obolibrary.org/obo/UBERON_0002384