PubMed:16902199
Annnotations
Glycan-Motif
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 11-21 | https://glytoucan.org/Structures/Glycans/G25326UC | denotes | xyloglucan |
| T2 | 230-240 | https://glytoucan.org/Structures/Glycans/G25326UC | denotes | Xyloglucan |
| T3 | 425-435 | https://glytoucan.org/Structures/Glycans/G25326UC | denotes | xyloglucan |
| T4 | 554-564 | https://glytoucan.org/Structures/Glycans/G25326UC | denotes | xyloglucan |
| T5 | 722-732 | https://glytoucan.org/Structures/Glycans/G25326UC | denotes | xyloglucan |
| T6 | 976-986 | https://glytoucan.org/Structures/Glycans/G25326UC | denotes | xyloglucan |
| T7 | 1023-1033 | https://glytoucan.org/Structures/Glycans/G25326UC | denotes | xyloglucan |
| T8 | 1098-1109 | https://glytoucan.org/Structures/Glycans/G00024MO | denotes | beta-glucan |
GlyCosmos6-Glycan-Motif-Image
| Id | Subject | Object | Predicate | Lexical cue | image |
|---|---|---|---|---|---|
| T1 | 11-21 | Glycan_Motif | denotes | xyloglucan | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G25326UC |
| T2 | 230-240 | Glycan_Motif | denotes | Xyloglucan | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G25326UC |
| T3 | 425-435 | Glycan_Motif | denotes | xyloglucan | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G25326UC |
| T4 | 554-564 | Glycan_Motif | denotes | xyloglucan | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G25326UC |
| T5 | 722-732 | Glycan_Motif | denotes | xyloglucan | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G25326UC |
| T6 | 976-986 | Glycan_Motif | denotes | xyloglucan | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G25326UC |
| T7 | 1023-1033 | Glycan_Motif | denotes | xyloglucan | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G25326UC |
| T8 | 1098-1109 | Glycan_Motif | denotes | beta-glucan | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00024MO |
Glycosmos6-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 11-21 | http://www.glycoepitope.jp/epitopes/EP0511 | denotes | xyloglucan |
| T2 | 230-240 | http://www.glycoepitope.jp/epitopes/EP0511 | denotes | Xyloglucan |
| T3 | 425-435 | http://www.glycoepitope.jp/epitopes/EP0511 | denotes | xyloglucan |
| T4 | 480-487 | http://www.glycoepitope.jp/epitopes/AN0352 | denotes | CCRC-M1 |
| T5 | 554-564 | http://www.glycoepitope.jp/epitopes/EP0511 | denotes | xyloglucan |
| T6 | 722-732 | http://www.glycoepitope.jp/epitopes/EP0511 | denotes | xyloglucan |
| T7 | 976-986 | http://www.glycoepitope.jp/epitopes/EP0511 | denotes | xyloglucan |
| T8 | 1023-1033 | http://www.glycoepitope.jp/epitopes/EP0511 | denotes | xyloglucan |
GlyCosmos6-Glycan-Motif-Structure
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 11-21 | https://glytoucan.org/Structures/Glycans/G25326UC | denotes | xyloglucan |
| T2 | 230-240 | https://glytoucan.org/Structures/Glycans/G25326UC | denotes | Xyloglucan |
| T3 | 425-435 | https://glytoucan.org/Structures/Glycans/G25326UC | denotes | xyloglucan |
| T4 | 554-564 | https://glytoucan.org/Structures/Glycans/G25326UC | denotes | xyloglucan |
| T5 | 722-732 | https://glytoucan.org/Structures/Glycans/G25326UC | denotes | xyloglucan |
| T6 | 976-986 | https://glytoucan.org/Structures/Glycans/G25326UC | denotes | xyloglucan |
| T7 | 1023-1033 | https://glytoucan.org/Structures/Glycans/G25326UC | denotes | xyloglucan |
| T8 | 1098-1109 | https://glytoucan.org/Structures/Glycans/G00024MO | denotes | beta-glucan |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| TextSentencer_T1 | 0-67 | Sentence | denotes | Engineered xyloglucan specificity in a carbohydrate-binding module. |
| TextSentencer_T2 | 68-229 | Sentence | denotes | The field of plant cell wall biology is constantly growing and consequently so is the need for more sensitive and specific probes for individual wall components. |
| TextSentencer_T3 | 230-404 | Sentence | denotes | Xyloglucan is a key polysaccharide widely distributed in the plant kingdom in both structural and storage tissues that exist in both fucosylated and non-fucosylated variants. |
| TextSentencer_T4 | 405-592 | Sentence | denotes | Presently, the only xyloglucan marker available is the monoclonal antibody CCRC-M1 that is specific to terminal alpha-1,2-linked fucosyl residues on xyloglucan oligo- and polysaccharides. |
| TextSentencer_T5 | 593-890 | Sentence | denotes | As a viable alternative to searches for natural binding proteins or creation of new monoclonal antibodies, an approach to select xyloglucan-specific binding proteins from a combinatorial library of the carbohydrate-binding module, CBM4-2, from xylanase Xyn10A of Rhodothermus marinus is described. |
| TextSentencer_T6 | 891-1139 | Sentence | denotes | Using phage display technology in combination with a chemoenzymatic method to anchor xyloglucan to solid supports, the selection of xyloglucan-binding modules with no detectable residual wild-type xylan and beta-glucan-binding ability was achieved. |
| T1 | 0-67 | Sentence | denotes | Engineered xyloglucan specificity in a carbohydrate-binding module. |
| T2 | 68-229 | Sentence | denotes | The field of plant cell wall biology is constantly growing and consequently so is the need for more sensitive and specific probes for individual wall components. |
| T3 | 230-404 | Sentence | denotes | Xyloglucan is a key polysaccharide widely distributed in the plant kingdom in both structural and storage tissues that exist in both fucosylated and non-fucosylated variants. |
| T4 | 405-592 | Sentence | denotes | Presently, the only xyloglucan marker available is the monoclonal antibody CCRC-M1 that is specific to terminal alpha-1,2-linked fucosyl residues on xyloglucan oligo- and polysaccharides. |
| T5 | 593-890 | Sentence | denotes | As a viable alternative to searches for natural binding proteins or creation of new monoclonal antibodies, an approach to select xyloglucan-specific binding proteins from a combinatorial library of the carbohydrate-binding module, CBM4-2, from xylanase Xyn10A of Rhodothermus marinus is described. |
| T6 | 891-1139 | Sentence | denotes | Using phage display technology in combination with a chemoenzymatic method to anchor xyloglucan to solid supports, the selection of xyloglucan-binding modules with no detectable residual wild-type xylan and beta-glucan-binding ability was achieved. |
| T1 | 0-67 | Sentence | denotes | Engineered xyloglucan specificity in a carbohydrate-binding module. |
| T2 | 68-229 | Sentence | denotes | The field of plant cell wall biology is constantly growing and consequently so is the need for more sensitive and specific probes for individual wall components. |
| T3 | 230-404 | Sentence | denotes | Xyloglucan is a key polysaccharide widely distributed in the plant kingdom in both structural and storage tissues that exist in both fucosylated and non-fucosylated variants. |
| T4 | 405-592 | Sentence | denotes | Presently, the only xyloglucan marker available is the monoclonal antibody CCRC-M1 that is specific to terminal alpha-1,2-linked fucosyl residues on xyloglucan oligo- and polysaccharides. |
| T5 | 593-890 | Sentence | denotes | As a viable alternative to searches for natural binding proteins or creation of new monoclonal antibodies, an approach to select xyloglucan-specific binding proteins from a combinatorial library of the carbohydrate-binding module, CBM4-2, from xylanase Xyn10A of Rhodothermus marinus is described. |
| T6 | 891-1139 | Sentence | denotes | Using phage display technology in combination with a chemoenzymatic method to anchor xyloglucan to solid supports, the selection of xyloglucan-binding modules with no detectable residual wild-type xylan and beta-glucan-binding ability was achieved. |
GlycoBiology-NCBITAXON
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 336-343 | http://purl.bioontology.org/ontology/STY/T024 | denotes | tissues |
| T2 | 379-382 | http://purl.bioontology.org/ontology/NCBITAXON/604139 | denotes | non |
| T3 | 460-470 | http://purl.bioontology.org/ontology/NCBITAXON/608684 | denotes | monoclonal |
| T4 | 677-687 | http://purl.bioontology.org/ontology/NCBITAXON/608684 | denotes | monoclonal |
| T5 | 856-868 | http://purl.bioontology.org/ontology/NCBITAXON/374811 | denotes | Rhodothermus |
| T6 | 856-876 | http://purl.bioontology.org/ontology/NCBITAXON/29549 | denotes | Rhodothermus marinus |
| T7 | 1098-1102 | http://purl.bioontology.org/ontology/NCBITAXON/158455 | denotes | beta |
| T8 | 1098-1102 | http://purl.bioontology.org/ontology/NCBITAXON/3554 | denotes | beta |
GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 168-177 | http://purl.obolibrary.org/obo/GO_0046960 | denotes | sensitive |
| T2 | 328-335 | http://purl.obolibrary.org/obo/GO_0051235 | denotes | storage |
| T3 | 328-335 | http://purl.obolibrary.org/obo/GO_0035732 | denotes | storage |
| T4 | 363-374 | http://purl.obolibrary.org/obo/GO_0036065 | denotes | fucosylated |
| T5 | 383-394 | http://purl.obolibrary.org/obo/GO_0036065 | denotes | fucosylated |
| T6 | 534-541 | http://purl.obolibrary.org/obo/GO_0036065 | denotes | fucosyl |
| T7 | 837-845 | http://purl.obolibrary.org/obo/GO_0031176 | denotes | xylanase |
GO-MF
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 39-59 | http://purl.obolibrary.org/obo/GO_0030246 | denotes | carbohydrate-binding |
| T2 | 795-815 | http://purl.obolibrary.org/obo/GO_0030246 | denotes | carbohydrate-binding |
| T3 | 52-59 | http://purl.obolibrary.org/obo/GO_0070026 | denotes | binding |
| T4 | 641-648 | http://purl.obolibrary.org/obo/GO_0070026 | denotes | binding |
| T5 | 742-749 | http://purl.obolibrary.org/obo/GO_0070026 | denotes | binding |
| T6 | 808-815 | http://purl.obolibrary.org/obo/GO_0070026 | denotes | binding |
| T7 | 1034-1041 | http://purl.obolibrary.org/obo/GO_0070026 | denotes | binding |
| T8 | 1110-1117 | http://purl.obolibrary.org/obo/GO_0070026 | denotes | binding |
| T9 | 52-59 | http://purl.obolibrary.org/obo/GO_0003680 | denotes | binding |
| T10 | 641-648 | http://purl.obolibrary.org/obo/GO_0003680 | denotes | binding |
| T11 | 742-749 | http://purl.obolibrary.org/obo/GO_0003680 | denotes | binding |
| T12 | 808-815 | http://purl.obolibrary.org/obo/GO_0003680 | denotes | binding |
| T13 | 1034-1041 | http://purl.obolibrary.org/obo/GO_0003680 | denotes | binding |
| T14 | 1110-1117 | http://purl.obolibrary.org/obo/GO_0003680 | denotes | binding |
| T15 | 52-59 | http://purl.obolibrary.org/obo/GO_0017091 | denotes | binding |
| T16 | 641-648 | http://purl.obolibrary.org/obo/GO_0017091 | denotes | binding |
| T17 | 742-749 | http://purl.obolibrary.org/obo/GO_0017091 | denotes | binding |
| T18 | 808-815 | http://purl.obolibrary.org/obo/GO_0017091 | denotes | binding |
| T19 | 1034-1041 | http://purl.obolibrary.org/obo/GO_0017091 | denotes | binding |
| T20 | 1110-1117 | http://purl.obolibrary.org/obo/GO_0017091 | denotes | binding |
| T21 | 52-59 | http://purl.obolibrary.org/obo/GO_0005488 | denotes | binding |
| T22 | 641-648 | http://purl.obolibrary.org/obo/GO_0005488 | denotes | binding |
| T23 | 742-749 | http://purl.obolibrary.org/obo/GO_0005488 | denotes | binding |
| T24 | 808-815 | http://purl.obolibrary.org/obo/GO_0005488 | denotes | binding |
| T25 | 1034-1041 | http://purl.obolibrary.org/obo/GO_0005488 | denotes | binding |
| T26 | 1110-1117 | http://purl.obolibrary.org/obo/GO_0005488 | denotes | binding |
| T27 | 471-479 | http://purl.obolibrary.org/obo/GO_0003823 | denotes | antibody |
| T28 | 688-698 | http://purl.obolibrary.org/obo/GO_0003823 | denotes | antibodies |
| T29 | 641-657 | http://purl.obolibrary.org/obo/GO_0005515 | denotes | binding proteins |
| T30 | 742-758 | http://purl.obolibrary.org/obo/GO_0005515 | denotes | binding proteins |
| T31 | 733-758 | http://purl.obolibrary.org/obo/GO_0019904 | denotes | specific binding proteins |
| T32 | 969-975 | http://purl.obolibrary.org/obo/GO_0043495 | denotes | anchor |
GO-CC
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 87-91 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T2 | 87-96 | http://purl.obolibrary.org/obo/GO_0005618 | denotes | cell wall |
UBERON-AE
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 336-343 | http://purl.obolibrary.org/obo/UBERON_0000479 | denotes | tissues |
AlvisNLP-Test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 3770e137 | 856-876 | https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=29549 | denotes | Rhodothermus marinus |
GlyTouCan-IUPAC
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| GlycanIUPAC_T1 | 379-382 | "http://rdf.glycoinfo.org/glycan/G02780QX" | denotes | non |
| GlycanIUPAC_T2 | 379-382 | "http://rdf.glycoinfo.org/glycan/G18425DX" | denotes | non |
| GlycanIUPAC_T3 | 379-382 | "http://rdf.glycoinfo.org/glycan/G18630JE" | denotes | non |
| GlycanIUPAC_T4 | 379-382 | "http://rdf.glycoinfo.org/glycan/G01004IT" | denotes | non |
| GlycanIUPAC_T5 | 379-382 | "http://rdf.glycoinfo.org/glycan/G87301QZ" | denotes | non |
| GlycanIUPAC_T6 | 379-382 | "http://rdf.glycoinfo.org/glycan/G39790GW" | denotes | non |
| GlycanIUPAC_T7 | 379-382 | "http://rdf.glycoinfo.org/glycan/G42928BB" | denotes | non |
| GlycanIUPAC_T8 | 379-382 | "http://rdf.glycoinfo.org/glycan/G51134HC" | denotes | non |
| GlycanIUPAC_T9 | 379-382 | "http://rdf.glycoinfo.org/glycan/G68183GR" | denotes | non |
| GlycanIUPAC_T10 | 379-382 | "http://rdf.glycoinfo.org/glycan/G46883FA" | denotes | non |
| GlycanIUPAC_T11 | 379-382 | "http://rdf.glycoinfo.org/glycan/G54702VY" | denotes | non |
GlycoBiology-Motifs
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 1098-1109 | http://rdf.glycoinfo.org/glycan/G00024MO | denotes | beta-glucan |
GlycoBiology-Epitope
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| PD-GlycoEpitope-B_T1 | 11-21 | http://www.glycoepitope.jp/epitopes/EP0511 | denotes | xyloglucan |
| PD-GlycoEpitope-B_T2 | 230-240 | http://www.glycoepitope.jp/epitopes/EP0511 | denotes | Xyloglucan |
| PD-GlycoEpitope-B_T3 | 425-435 | http://www.glycoepitope.jp/epitopes/EP0511 | denotes | xyloglucan |
| PD-GlycoEpitope-B_T4 | 554-564 | http://www.glycoepitope.jp/epitopes/EP0511 | denotes | xyloglucan |
| PD-GlycoEpitope-B_T5 | 722-732 | http://www.glycoepitope.jp/epitopes/EP0511 | denotes | xyloglucan |
| PD-GlycoEpitope-B_T6 | 976-986 | http://www.glycoepitope.jp/epitopes/EP0511 | denotes | xyloglucan |
| PD-GlycoEpitope-B_T7 | 1023-1033 | http://www.glycoepitope.jp/epitopes/EP0511 | denotes | xyloglucan |
| PD-GlycoEpitope-B_T8 | 480-487 | http://www.glycoepitope.jp/epitopes/AN0352 | denotes | CCRC-M1 |
performance-test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| PD-UBERON-AE-B_T1 | 336-343 | http://purl.obolibrary.org/obo/UBERON_0000479 | denotes | tissues |
GlyCosmos15-Glycan
| Id | Subject | Object | Predicate | Lexical cue | image |
|---|---|---|---|---|---|
| T1 | 230-240 | Glycan | denotes | Xyloglucan | https://api.glycosmos.org/wurcs2image/latest/png/binary/G25326UC |
NCBITAXON
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| T1 | 856-876 | OrganismTaxon | denotes | Rhodothermus marinus | 29549 |
Glycosmos15-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue | glycoepitope_id |
|---|---|---|---|---|---|
| T1 | 11-21 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | xyloglucan | http://www.glycoepitope.jp/epitopes/EP0511 |
| T2 | 230-240 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | Xyloglucan | http://www.glycoepitope.jp/epitopes/EP0511 |
| T3 | 425-435 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | xyloglucan | http://www.glycoepitope.jp/epitopes/EP0511 |
| T4 | 480-487 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | CCRC-M1 | http://www.glycoepitope.jp/epitopes/AN0352 |
| T5 | 554-564 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | xyloglucan | http://www.glycoepitope.jp/epitopes/EP0511 |
| T6 | 722-732 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | xyloglucan | http://www.glycoepitope.jp/epitopes/EP0511 |
| T7 | 976-986 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | xyloglucan | http://www.glycoepitope.jp/epitopes/EP0511 |
| T8 | 1023-1033 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | xyloglucan | http://www.glycoepitope.jp/epitopes/EP0511 |
Anatomy-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 92-96 | Body_part | denotes | wall | http://purl.obolibrary.org/obo/UBERON_0000060 |
| T2 | 213-217 | Body_part | denotes | wall | http://purl.obolibrary.org/obo/UBERON_0000060 |