> top > docs > PubMed:1679576 > annotations

PubMed:1679576 JSONTXT

Annnotations TAB JSON ListView MergeView

jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 0-10 protein denotes NF-kappa B
T2 23-30 cell_type denotes T cells
T3 53-64 protein denotes Tax protein
T4 135-138 protein denotes Tax
T5 172-182 protein denotes NF-kappa B
T6 192-212 DNA denotes recognition sequence
T7 220-230 protein denotes NF-kappa B
T8 273-301 cell_line denotes T lymphoid Jurkat cell lines
T9 303-306 cell_line denotes 19D
T10 311-313 cell_line denotes 9J
T11 341-362 DNA denotes Tax expression vector
T12 364-391 cell_line denotes Tax expressing T cell lines
T13 426-436 protein denotes NF-kappa B
T14 519-547 DNA denotes palindromic NF-kappa B probe
T15 566-592 DNA denotes interferon beta PRDII site
T16 679-699 protein denotes DNA binding proteins
T17 703-721 protein denotes 85, 75, and 54 kDa
T18 734-754 cell_line denotes Tax expressing cells
T19 759-773 protein denotes 85-kDa protein
T20 780-806 protein denotes 92-kDa DNA binding protein
T21 850-861 protein denotes Tax protein
T22 865-868 cell_line denotes 19D
T23 873-875 cell_line denotes 9J
T24 909-994 DNA denotes endogenous NF-kappa B-dependent granulocyte-macrophage colony stimulating factor gene
T25 1047-1077 DNA denotes NF-kappa B-regulated promoters
T26 1185-1188 protein denotes Tax
T27 1203-1217 cell_line denotes Jurkat T cells
T28 1249-1259 protein denotes NF-kappa B
T29 1260-1280 protein denotes DNA binding proteins
T30 1315-1345 DNA denotes NF-kappa B-regulated promoters

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-107 Sentence denotes NF-kappa B activity in T cells stably expressing the Tax protein of human T cell lymphotropic virus type I.
S2 108-363 Sentence denotes The effect of constitutive Tax expression on the interaction of NF-kappa B with its recognition sequence and on NF-kappa B-dependent gene expression was examined in T lymphoid Jurkat cell lines (19D and 9J) stably transformed with a Tax expression vector.
S3 364-593 Sentence denotes Tax expressing T cell lines contained a constitutive level of NF-kappa B binding activity, detectable by mobility shift assay and uv cross-linking using a palindromic NF-kappa B probe homologous to the interferon beta PRDII site.
S4 594-835 Sentence denotes In Jurkat and NC2.10 induction with phorbol esters resulted in the appearance of new DNA binding proteins of 85, 75, and 54 kDa, whereas in Tax expressing cells the 85-kDa protein and a 92-kDa DNA binding protein were constitutively induced.
S5 836-1078 Sentence denotes Expression of Tax protein in 19D and 9J resulted in transcription of the endogenous NF-kappa B-dependent granulocyte-macrophage colony stimulating factor gene and increased basal level expression of transfected NF-kappa B-regulated promoters.
S6 1079-1184 Sentence denotes Nonetheless transcription of both the endogenous and the transfected gene was inducible by PMA treatment.
S7 1185-1346 Sentence denotes Tax expression in Jurkat T cells may alter the stoichiometry of NF-kappa B DNA binding proteins and thus change the expression of NF-kappa B-regulated promoters.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 23-30 NP denotes T cells
C2 49-64 NP denotes the Tax protein
C3 135-149 NP denotes Tax expression
C4 172-182 NP denotes NF-kappa B
C5 188-191 NP denotes its
C7 284-295 NP denotes Jurkat cell
C6 273-314 NP denotes T lymphoid Jurkat cell lines (19D and 9J)
C9 379-385 NP denotes T cell
C8 379-391 NP denotes T cell lines
C10 850-861 NP denotes Tax protein
C11 865-875 NP denotes 19D and 9J
C12 1047-1077 NP denotes NF-kappa B-regulated promoters
C13 1185-1199 NP denotes Tax expression
C14 1203-1217 NP denotes Jurkat T cells
C15 1315-1345 NP denotes NF-kappa B-regulated promoters
R1 C5 C4 coref-pron its,NF-kappa B
R2 C7 C1 coref-ident Jurkat cell,T cells
R3 C9 C7 coref-ident T cell,Jurkat cell
R4 C8 C6 coref-ident T cell lines,T lymphoid Jurkat cell lines (19D and 9J)
R5 C10 C2 coref-ident Tax protein,the Tax protein
R6 C11 C6 coref-ident 19D and 9J,T lymphoid Jurkat cell lines (19D and 9J)
R7 C13 C3 coref-ident Tax expression,Tax expression
R8 C14 C9 coref-ident Jurkat T cells,T cell
R9 C15 C12 coref-ident NF-kappa B-regulated promoters,NF-kappa B-regulated promoters

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 0-10 protein_molecule denotes NF-kappa B
T2 23-30 cell_type denotes T cells
T3 53-64 protein_molecule denotes Tax protein
T4 68-106 virus denotes human T cell lymphotropic virus type I
T5 135-138 protein_molecule denotes Tax
T6 172-182 protein_molecule denotes NF-kappa B
T7 192-212 DNA_domain_or_region denotes recognition sequence
T8 220-230 protein_molecule denotes NF-kappa B
T9 273-301 cell_line denotes T lymphoid Jurkat cell lines
T10 303-306 cell_line denotes 19D
T11 311-313 cell_line denotes 9J
T12 341-344 protein_molecule denotes Tax
T13 364-367 protein_molecule denotes Tax
T14 426-436 protein_molecule denotes NF-kappa B
T15 469-489 other_name denotes mobility shift assay
T16 494-510 other_name denotes uv cross-linking
T17 519-530 DNA_molecule denotes palindromic
T18 531-541 protein_molecule denotes NF-kappa B
T19 566-592 DNA_domain_or_region denotes interferon beta PRDII site
T20 630-644 other_organic_compound denotes phorbol esters
T21 679-699 protein_family_or_group denotes DNA binding proteins
T22 734-737 protein_molecule denotes Tax
T23 759-773 protein_molecule denotes 85-kDa protein
T24 780-806 protein_molecule denotes 92-kDa DNA binding protein
T25 850-853 protein_molecule denotes Tax
T26 865-868 cell_line denotes 19D
T27 873-875 cell_line denotes 9J
T28 909-919 DNA_domain_or_region denotes endogenous
T29 920-930 protein_molecule denotes NF-kappa B
T30 1009-1031 other_name denotes basal level expression
T31 1047-1057 protein_molecule denotes NF-kappa B
T32 1170-1183 other_name denotes PMA treatment
T33 1185-1188 protein_molecule denotes Tax
T34 1203-1217 cell_line denotes Jurkat T cells
T35 1249-1259 protein_molecule denotes NF-kappa B
T36 1260-1280 protein_family_or_group denotes DNA binding proteins
T37 1315-1325 protein_molecule denotes NF-kappa B