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PubMed:1671881 JSONTXT

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LitCoin-entities-OrganismTaxon-PD

Id Subject Object Predicate Lexical cue db_id
T1 343-348 OrganismTaxon denotes codon NCBItxid:79338

LitCoin-sentences

Id Subject Object Predicate Lexical cue
T1 0-65 Sentence denotes Two distinct mutations at a single BamHI site in phenylketonuria.
T2 66-192 Sentence denotes Classical phenylketonuria is an autosomal recessive disease caused by a deficiency of hepatic phenylalanine hydroxylase (PAH).
T3 193-410 Sentence denotes The abolition of an invariant BamHI site located in the coding sequence of the PAH gene (exon 7) led to the recognition of two new point mutations at codon 272 and 273 (272gly----stop and 273ser----phe, respectively).
T4 411-534 Sentence denotes Both mutations were detected in north eastern France or Belgium and occurred on the background of RFLP haplotype 7 alleles.
T5 535-701 Sentence denotes The present study supports the view that the clinical heterogeneity in PKU is accounted for by the large variety of mutant genotypes associated with PAH deficiencies.

LitCoin-entities

Id Subject Object Predicate Lexical cue db_id
15 49-64 DiseaseOrPhenotypicFeature denotes phenylketonuria MESH:D010661
16 66-91 DiseaseOrPhenotypicFeature denotes Classical phenylketonuria MESH:D010661
17 98-125 DiseaseOrPhenotypicFeature denotes autosomal recessive disease MESH:D030342
18 138-185 DiseaseOrPhenotypicFeature denotes deficiency of hepatic phenylalanine hydroxylase OMIM:261600
19 187-190 GeneOrGeneProduct denotes PAH NCBIGene:5053
20 272-275 GeneOrGeneProduct denotes PAH NCBIGene:5053
21 362-376 SequenceVariant denotes 272gly----stop DBSNP:rs62514952
22 381-394 SequenceVariant denotes 273ser----phe DBSNP:rs62514953
23 606-609 DiseaseOrPhenotypicFeature denotes PKU MESH:D010661
24 684-700 DiseaseOrPhenotypicFeature denotes PAH deficiencies OMIM:261600

LitCoin_Mondo

Id Subject Object Predicate Lexical cue mondo_id
T1 49-64 DiseaseOrPhenotypicFeature denotes phenylketonuria 0009861
T2 66-91 DiseaseOrPhenotypicFeature denotes Classical phenylketonuria 0019259
T3 76-91 DiseaseOrPhenotypicFeature denotes phenylketonuria 0009861
T4 98-125 DiseaseOrPhenotypicFeature denotes autosomal recessive disease 0006025
T5 152-159 DiseaseOrPhenotypicFeature denotes hepatic 0002251

LitCoin-GeneOrGeneProduct-v0

Id Subject Object Predicate Lexical cue
T1 13-22 GeneOrGeneProduct denotes mutations
T2 160-185 GeneOrGeneProduct denotes phenylalanine hydroxylase
T3 187-190 GeneOrGeneProduct denotes PAH
T4 272-275 GeneOrGeneProduct denotes PAH
T5 324-329 GeneOrGeneProduct denotes point
T6 330-339 GeneOrGeneProduct denotes mutations
T7 357-360 GeneOrGeneProduct denotes 273
T8 372-376 GeneOrGeneProduct denotes stop
T9 416-425 GeneOrGeneProduct denotes mutations
T10 509-513 GeneOrGeneProduct denotes RFLP
T11 634-639 GeneOrGeneProduct denotes large
T12 651-657 GeneOrGeneProduct denotes mutant
T13 684-687 GeneOrGeneProduct denotes PAH

LitCoin-GeneOrGeneProduct-v2

Id Subject Object Predicate Lexical cue
T1 160-185 GeneOrGeneProduct denotes phenylalanine hydroxylase
T2 187-190 GeneOrGeneProduct denotes PAH
T3 272-275 GeneOrGeneProduct denotes PAH
T4 357-360 GeneOrGeneProduct denotes 273
T5 372-376 GeneOrGeneProduct denotes stop
T6 634-639 GeneOrGeneProduct denotes large
T7 651-657 GeneOrGeneProduct denotes mutant
T8 684-687 GeneOrGeneProduct denotes PAH

LitCoin-Disease-MeSH

Id Subject Object Predicate Lexical cue originalLabel
T1 49-64 DiseaseOrPhenotypicFeature denotes phenylketonuria D010661
T2 76-91 DiseaseOrPhenotypicFeature denotes phenylketonuria D010661
T3 118-125 DiseaseOrPhenotypicFeature denotes disease D004194
T4 684-700 DiseaseOrPhenotypicFeature denotes PAH deficiencies D010661

LitCoin-GeneOrGeneProduct-v3

Id Subject Object Predicate Lexical cue
T1 160-185 GeneOrGeneProduct denotes phenylalanine hydroxylase
T2 187-190 GeneOrGeneProduct denotes PAH
T3 272-275 GeneOrGeneProduct denotes PAH
T4 357-360 GeneOrGeneProduct denotes 273
T5 684-687 GeneOrGeneProduct denotes PAH

LitCoin_Mondo_095

Id Subject Object Predicate Lexical cue mondo_id
T1 49-64 DiseaseOrPhenotypicFeature denotes phenylketonuria 0009861
T2 76-91 DiseaseOrPhenotypicFeature denotes phenylketonuria 0009861
T3 98-125 DiseaseOrPhenotypicFeature denotes autosomal recessive disease 0006025
T4 187-190 DiseaseOrPhenotypicFeature denotes PAH 0015924
T5 272-275 DiseaseOrPhenotypicFeature denotes PAH 0015924
T6 606-609 DiseaseOrPhenotypicFeature denotes PKU 0009861
T7 684-687 DiseaseOrPhenotypicFeature denotes PAH 0015924

LitCoin-MeSH-Disease-2

Id Subject Object Predicate Lexical cue ID:
T1 49-64 DiseaseOrPhenotypicFeature denotes phenylketonuria D010661
T2 76-91 DiseaseOrPhenotypicFeature denotes phenylketonuria D010661
T3 118-125 DiseaseOrPhenotypicFeature denotes disease D004194
T4 138-185 DiseaseOrPhenotypicFeature denotes deficiency of hepatic phenylalanine hydroxylase DISEASE
T5 606-609 DiseaseOrPhenotypicFeature denotes PKU DISEASE
T6 684-700 DiseaseOrPhenotypicFeature denotes PAH deficiencies D010661

LitCoin-MONDO_bioort2019

Id Subject Object Predicate Lexical cue #label
T1 49-64 DiseaseOrPhenotypicFeature denotes phenylketonuria D010661
T2 76-91 DiseaseOrPhenotypicFeature denotes phenylketonuria D010661
T3 98-125 DiseaseOrPhenotypicFeature denotes autosomal recessive disease EisukeAdded
T4 138-185 DiseaseOrPhenotypicFeature denotes deficiency of hepatic phenylalanine hydroxylase DISEASE
T5 606-609 DiseaseOrPhenotypicFeature denotes PKU DISEASE
T6 684-700 DiseaseOrPhenotypicFeature denotes PAH deficiencies D010661

LitCoin-Chemical-MeSH-CHEBI

Id Subject Object Predicate Lexical cue ID:
T1 160-185 ChemicalEntity denotes phenylalanine hydroxylase D010651
T2 187-190 ChemicalEntity denotes PAH http://purl.obolibrary.org/obo/CHEBI_53305|http://purl.obolibrary.org/obo/CHEBI_33848|http://purl.obolibrary.org/obo/CHEBI_31204|http://purl.obolibrary.org/obo/CHEBI_104011|D010651
T7 272-275 ChemicalEntity denotes PAH http://purl.obolibrary.org/obo/CHEBI_53305|http://purl.obolibrary.org/obo/CHEBI_33848|http://purl.obolibrary.org/obo/CHEBI_31204|http://purl.obolibrary.org/obo/CHEBI_104011|D010651
T12 684-687 ChemicalEntity denotes PAH http://purl.obolibrary.org/obo/CHEBI_53305|http://purl.obolibrary.org/obo/CHEBI_33848|http://purl.obolibrary.org/obo/CHEBI_31204|http://purl.obolibrary.org/obo/CHEBI_104011|D010651

LitCoin-training-merged

Id Subject Object Predicate Lexical cue #label ID:
T12 684-687 ChemicalEntity denotes PAH D010651|http://purl.obolibrary.org/obo/CHEBI_104011|http://purl.obolibrary.org/obo/CHEBI_31204|http://purl.obolibrary.org/obo/CHEBI_33848|http://purl.obolibrary.org/obo/CHEBI_53305
T7 272-275 ChemicalEntity denotes PAH D010651|http://purl.obolibrary.org/obo/CHEBI_104011|http://purl.obolibrary.org/obo/CHEBI_31204|http://purl.obolibrary.org/obo/CHEBI_33848|http://purl.obolibrary.org/obo/CHEBI_53305
T2 187-190 ChemicalEntity denotes PAH D010651|http://purl.obolibrary.org/obo/CHEBI_104011|http://purl.obolibrary.org/obo/CHEBI_31204|http://purl.obolibrary.org/obo/CHEBI_33848|http://purl.obolibrary.org/obo/CHEBI_53305
T1 160-185 ChemicalEntity denotes phenylalanine hydroxylase D010651
T5 684-687 GeneOrGeneProduct denotes PAH
T4 357-360 GeneOrGeneProduct denotes 273
T3 272-275 GeneOrGeneProduct denotes PAH
T67422 187-190 GeneOrGeneProduct denotes PAH
T69534 160-185 GeneOrGeneProduct denotes phenylalanine hydroxylase
T6 684-700 DiseaseOrPhenotypicFeature denotes PAH deficiencies D010661
T27351 606-609 DiseaseOrPhenotypicFeature denotes PKU DISEASE
T94853 138-185 DiseaseOrPhenotypicFeature denotes deficiency of hepatic phenylalanine hydroxylase DISEASE
T19330 98-125 DiseaseOrPhenotypicFeature denotes autosomal recessive disease EisukeAdded
T75160 76-91 DiseaseOrPhenotypicFeature denotes phenylketonuria D010661
T13886 49-64 DiseaseOrPhenotypicFeature denotes phenylketonuria D010661

NCBIDiseaseCorpus

Id Subject Object Predicate Lexical cue
T1 49-64 SpecificDisease:D010661 denotes phenylketonuria
T2 66-91 SpecificDisease:D010661 denotes Classical phenylketonuria
T3 98-125 DiseaseClass:D030342 denotes autosomal recessive disease
T4 138-185 SpecificDisease:OMIM:261600 denotes deficiency of hepatic phenylalanine hydroxylase
T5 606-609 SpecificDisease:D010661 denotes PKU
T6 684-700 SpecificDisease:OMIM:261600 denotes PAH deficiencies

biored-valid-deepseek-nr-ng

Id Subject Object Predicate Lexical cue
T1 0-3 OrganismTaxon denotes Two
T2 4-12 OrganismTaxon denotes distinct
T3 13-22 SequenceVariant denotes mutations
T4 28-34 OrganismTaxon denotes single
T5 35-40 ChemicalEntity denotes BamHI
T6 41-45 OrganismTaxon denotes site
T7 49-64 DiseaseOrPhenotypicFeature denotes phenylketonuria
T8 64-65 OrganismTaxon denotes .
T9 66-75 OrganismTaxon denotes Classical
T10 90-91 OrganismTaxon denotes a
T11 92-94 OrganismTaxon denotes is
T12 95-97 OrganismTaxon denotes an
T13 98-107 OrganismTaxon denotes autosomal
T14 108-117 OrganismTaxon denotes recessive
T15 118-125 DiseaseOrPhenotypicFeature denotes disease
T16 126-132 OrganismTaxon denotes caused
T17 133-135 OrganismTaxon denotes by
T18 138-148 DiseaseOrPhenotypicFeature denotes deficiency
T19 149-151 OrganismTaxon denotes of
T20 152-159 OrganismTaxon denotes hepatic
T21 160-173 ChemicalEntity denotes phenylalanine
T22 174-185 GeneOrGeneProduct denotes hydroxylase
T23 186-191 GeneOrGeneProduct denotes (PAH)
T24 191-192 OrganismTaxon denotes .
T25 193-196 OrganismTaxon denotes The
T26 197-206 OrganismTaxon denotes abolition
T27 207-209 OrganismTaxon denotes of
T28 210-212 OrganismTaxon denotes an
T29 213-222 OrganismTaxon denotes invariant
T30 223-228 ChemicalEntity denotes BamHI
T31 229-233 OrganismTaxon denotes site
T32 234-241 OrganismTaxon denotes located
T33 245-248 OrganismTaxon denotes the
T34 249-255 OrganismTaxon denotes coding
T35 256-264 OrganismTaxon denotes sequence
T36 265-267 OrganismTaxon denotes of
T37 272-275 GeneOrGeneProduct denotes PAH
T38 276-280 GeneOrGeneProduct denotes gene
T39 281-286 OrganismTaxon denotes (exon
T40 287-288 OrganismTaxon denotes 7
T41 288-289 OrganismTaxon denotes )
T42 290-293 OrganismTaxon denotes led
T43 294-296 OrganismTaxon denotes to
T44 297-300 OrganismTaxon denotes the
T45 301-312 OrganismTaxon denotes recognition
T46 313-315 OrganismTaxon denotes of
T47 316-319 OrganismTaxon denotes two
T48 320-323 OrganismTaxon denotes new
T49 324-329 OrganismTaxon denotes point
T50 330-339 SequenceVariant denotes mutations
T51 343-348 OrganismTaxon denotes codon
T52 349-352 OrganismTaxon denotes 272
T53 353-356 OrganismTaxon denotes and
T54 357-360 OrganismTaxon denotes 273
T55 361-368 SequenceVariant denotes (272gly
T56 368-376 SequenceVariant denotes ----stop
T57 381-387 SequenceVariant denotes 273ser
T58 387-394 SequenceVariant denotes ----phe
T59 394-395 OrganismTaxon denotes ,
T60 396-408 OrganismTaxon denotes respectively
T61 408-409 OrganismTaxon denotes )
T62 409-410 OrganismTaxon denotes .
T63 411-415 OrganismTaxon denotes Both
T64 416-425 SequenceVariant denotes mutations
T65 426-430 OrganismTaxon denotes were
T66 431-439 OrganismTaxon denotes detected
T67 440-442 OrganismTaxon denotes in
T68 443-448 OrganismTaxon denotes north
T69 449-456 OrganismTaxon denotes eastern
T70 457-463 OrganismTaxon denotes France
T71 467-474 OrganismTaxon denotes Belgium
T72 475-478 OrganismTaxon denotes and
T73 479-487 OrganismTaxon denotes occurred
T74 488-490 OrganismTaxon denotes on
T75 491-494 OrganismTaxon denotes the
T76 495-505 OrganismTaxon denotes background
T77 506-508 OrganismTaxon denotes of
T78 509-513 ChemicalEntity denotes RFLP
T79 514-523 OrganismTaxon denotes haplotype
T80 524-525 OrganismTaxon denotes 7
T81 526-533 OrganismTaxon denotes alleles
T82 533-534 OrganismTaxon denotes .
T83 535-538 OrganismTaxon denotes The
T84 539-546 OrganismTaxon denotes present
T85 547-552 OrganismTaxon denotes study
T86 553-561 OrganismTaxon denotes supports
T87 562-565 OrganismTaxon denotes the
T88 566-570 OrganismTaxon denotes view
T89 571-575 OrganismTaxon denotes that
T90 580-588 OrganismTaxon denotes clinical
T91 589-602 OrganismTaxon denotes heterogeneity
T92 606-609 DiseaseOrPhenotypicFeature denotes PKU
T93 610-612 OrganismTaxon denotes is
T94 613-622 OrganismTaxon denotes accounted
T95 623-626 OrganismTaxon denotes for
T96 627-629 OrganismTaxon denotes by
T97 630-633 OrganismTaxon denotes the
T98 634-639 OrganismTaxon denotes large
T99 640-647 OrganismTaxon denotes variety
T100 648-650 OrganismTaxon denotes of
T101 651-657 OrganismTaxon denotes mutant
T102 658-667 OrganismTaxon denotes genotypes
T103 668-678 OrganismTaxon denotes associated
T104 679-683 OrganismTaxon denotes with
T105 684-687 GeneOrGeneProduct denotes PAH
T106 688-700 DiseaseOrPhenotypicFeature denotes deficiencies
T107 700-701 OrganismTaxon denotes .

biored-valid

Id Subject Object Predicate Lexical cue
T1 49-64 DiseaseOrPhenotypicFeature denotes phenylketonuria
T2 66-91 DiseaseOrPhenotypicFeature denotes Classical phenylketonuria
T3 98-125 DiseaseOrPhenotypicFeature denotes autosomal recessive disease
T4 138-185 DiseaseOrPhenotypicFeature denotes deficiency of hepatic phenylalanine hydroxylase
T5 187-190 GeneOrGeneProduct denotes PAH
T6 272-275 GeneOrGeneProduct denotes PAH
T7 362-376 SequenceVariant denotes 272gly----stop
T8 381-394 SequenceVariant denotes 273ser----phe
T9 606-609 DiseaseOrPhenotypicFeature denotes PKU
T10 684-700 DiseaseOrPhenotypicFeature denotes PAH deficiencies

biored-valid-deepseek-nr-g

Id Subject Object Predicate Lexical cue
T1 35-40 SequenceVariant denotes BamHI
T2 49-64 DiseaseOrPhenotypicFeature denotes phenylketonuria
T3 160-185 GeneOrGeneProduct denotes phenylalanine hydroxylase
T4 187-190 GeneOrGeneProduct denotes PAH
T5 223-228 SequenceVariant denotes BamHI
T6 272-275 GeneOrGeneProduct denotes PAH
T7 362-376 SequenceVariant denotes 272gly----stop
T8 381-394 SequenceVariant denotes 273ser----phe
T9 509-513 SequenceVariant denotes RFLP
T10 606-609 DiseaseOrPhenotypicFeature denotes PKU

biored-valid-deepseek-r-ng

Id Subject Object Predicate Lexical cue
T1 35-40 SequenceVariant denotes BamHI
T2 49-64 DiseaseOrPhenotypicFeature denotes phenylketonuria
T3 160-185 GeneOrGeneProduct denotes phenylalanine hydroxylase
T4 187-190 GeneOrGeneProduct denotes PAH
T5 223-228 SequenceVariant denotes BamHI
T6 282-288 GeneOrGeneProduct denotes exon 7
T7 343-352 SequenceVariant denotes codon 272
T8 362-376 SequenceVariant denotes 272gly----stop
T9 381-394 SequenceVariant denotes 273ser----phe
T10 509-533 SequenceVariant denotes RFLP haplotype 7 alleles
T11 606-609 DiseaseOrPhenotypicFeature denotes PKU
T12 651-667 SequenceVariant denotes mutant genotypes

biored-valid-deepseek-r-g

Id Subject Object Predicate Lexical cue
T1 35-40 GeneOrGeneProduct denotes BamHI
T2 49-64 DiseaseOrPhenotypicFeature denotes phenylketonuria
T3 160-185 GeneOrGeneProduct denotes phenylalanine hydroxylase
T4 187-190 GeneOrGeneProduct denotes PAH
T5 223-228 GeneOrGeneProduct denotes BamHI
T6 272-275 GeneOrGeneProduct denotes PAH
T7 324-339 SequenceVariant denotes point mutations
T8 362-376 SequenceVariant denotes 272gly----stop
T9 381-394 SequenceVariant denotes 273ser----phe
T10 509-533 SequenceVariant denotes RFLP haplotype 7 alleles
T11 606-609 DiseaseOrPhenotypicFeature denotes PKU

biored-valid-gemini-nr-ng

Id Subject Object Predicate Lexical cue
T1 49-64 DiseaseOrPhenotypicFeature denotes phenylketonuria
T2 152-185 GeneOrGeneProduct denotes hepatic phenylalanine hydroxylase
T3 187-190 GeneOrGeneProduct denotes PAH
T4 272-280 GeneOrGeneProduct denotes PAH gene
T5 362-376 SequenceVariant denotes 272gly----stop
T6 381-394 SequenceVariant denotes 273ser----phe
T7 457-463 OrganismTaxon denotes France
T8 467-474 OrganismTaxon denotes Belgium
T9 606-609 DiseaseOrPhenotypicFeature denotes PKU
T10 684-700 DiseaseOrPhenotypicFeature denotes PAH deficiencies

biored-valid-gemini-r-ng

Id Subject Object Predicate Lexical cue
T1 13-22 SequenceVariant denotes mutations
T2 35-40 ChemicalEntity denotes BamHI
T3 49-64 DiseaseOrPhenotypicFeature denotes phenylketonuria
T4 66-91 DiseaseOrPhenotypicFeature denotes Classical phenylketonuria
T5 98-125 DiseaseOrPhenotypicFeature denotes autosomal recessive disease
T6 138-185 DiseaseOrPhenotypicFeature denotes deficiency of hepatic phenylalanine hydroxylase
T7 187-190 GeneOrGeneProduct denotes PAH
T8 223-228 ChemicalEntity denotes BamHI
T9 272-275 GeneOrGeneProduct denotes PAH
T10 324-339 SequenceVariant denotes point mutations
T11 362-376 SequenceVariant denotes 272gly----stop
T12 381-394 SequenceVariant denotes 273ser----phe
T13 416-425 SequenceVariant denotes mutations
T14 509-525 SequenceVariant denotes RFLP haplotype 7
T15 606-609 DiseaseOrPhenotypicFeature denotes PKU
T16 651-667 SequenceVariant denotes mutant genotypes
T17 684-700 DiseaseOrPhenotypicFeature denotes PAH deficiencies

biored-valid-gemini-r-g

Id Subject Object Predicate Lexical cue
T1 35-40 GeneOrGeneProduct denotes BamHI
T2 49-64 DiseaseOrPhenotypicFeature denotes phenylketonuria
T3 66-91 DiseaseOrPhenotypicFeature denotes Classical phenylketonuria
T4 160-185 GeneOrGeneProduct denotes phenylalanine hydroxylase
T5 187-190 GeneOrGeneProduct denotes PAH
T6 223-228 GeneOrGeneProduct denotes BamHI
T7 272-275 GeneOrGeneProduct denotes PAH
T8 362-376 SequenceVariant denotes 272gly----stop
T9 381-394 SequenceVariant denotes 273ser----phe
T10 606-609 DiseaseOrPhenotypicFeature denotes PKU
T11 684-700 DiseaseOrPhenotypicFeature denotes PAH deficiencies

biored-valid-gpt-nr-ng

Id Subject Object Predicate Lexical cue
T1 35-40 GeneOrGeneProduct denotes BamHI
T2 49-64 DiseaseOrPhenotypicFeature denotes phenylketonuria
T3 160-185 GeneOrGeneProduct denotes phenylalanine hydroxylase
T4 187-190 GeneOrGeneProduct denotes PAH
T5 223-228 GeneOrGeneProduct denotes BamHI
T6 272-275 GeneOrGeneProduct denotes PAH
T7 362-376 SequenceVariant denotes 272gly----stop
T8 381-394 SequenceVariant denotes 273ser----phe
T9 606-609 DiseaseOrPhenotypicFeature denotes PKU
T10 684-687 GeneOrGeneProduct denotes PAH

biored-valid-gpt-nr-g

Id Subject Object Predicate Lexical cue
T1 35-40 GeneOrGeneProduct denotes BamHI
T2 49-64 DiseaseOrPhenotypicFeature denotes phenylketonuria
T3 160-185 GeneOrGeneProduct denotes phenylalanine hydroxylase
T4 187-190 GeneOrGeneProduct denotes PAH
T5 223-228 GeneOrGeneProduct denotes BamHI
T6 272-280 GeneOrGeneProduct denotes PAH gene
T7 362-376 SequenceVariant denotes 272gly----stop
T8 381-394 SequenceVariant denotes 273ser----phe
T9 606-609 DiseaseOrPhenotypicFeature denotes PKU
T10 684-687 GeneOrGeneProduct denotes PAH

biored-valid-gpt-r-ng

Id Subject Object Predicate Lexical cue
T1 35-40 GeneOrGeneProduct denotes BamHI
T2 49-64 DiseaseOrPhenotypicFeature denotes phenylketonuria
T3 66-91 DiseaseOrPhenotypicFeature denotes Classical phenylketonuria
T4 98-125 DiseaseOrPhenotypicFeature denotes autosomal recessive disease
T5 138-185 DiseaseOrPhenotypicFeature denotes deficiency of hepatic phenylalanine hydroxylase
T6 187-190 GeneOrGeneProduct denotes PAH
T7 223-228 GeneOrGeneProduct denotes BamHI
T8 272-280 GeneOrGeneProduct denotes PAH gene
T9 362-376 SequenceVariant denotes 272gly----stop
T10 381-394 SequenceVariant denotes 273ser----phe
T11 606-609 DiseaseOrPhenotypicFeature denotes PKU
T12 684-687 GeneOrGeneProduct denotes PAH

biored-valid-gpt-r-g

Id Subject Object Predicate Lexical cue
T1 35-40 GeneOrGeneProduct denotes BamHI
T2 49-64 DiseaseOrPhenotypicFeature denotes phenylketonuria
T3 66-91 DiseaseOrPhenotypicFeature denotes Classical phenylketonuria
T4 138-191 DiseaseOrPhenotypicFeature denotes deficiency of hepatic phenylalanine hydroxylase (PAH)
T5 223-228 GeneOrGeneProduct denotes BamHI
T6 272-275 GeneOrGeneProduct denotes PAH
T7 362-376 SequenceVariant denotes 272gly----stop
T8 381-394 SequenceVariant denotes 273ser----phe
T9 514-533 SequenceVariant denotes haplotype 7 alleles
T10 606-609 DiseaseOrPhenotypicFeature denotes PKU
T11 684-700 DiseaseOrPhenotypicFeature denotes PAH deficiencies

biored-valid-gemini-nr-g

Id Subject Object Predicate Lexical cue
T1 49-64 DiseaseOrPhenotypicFeature denotes phenylketonuria
T2 160-191 GeneOrGeneProduct denotes phenylalanine hydroxylase (PAH)
T3 272-280 GeneOrGeneProduct denotes PAH gene
T4 362-376 SequenceVariant denotes 272gly----stop
T5 381-394 SequenceVariant denotes 273ser----phe
T6 606-609 DiseaseOrPhenotypicFeature denotes PKU
T7 684-700 DiseaseOrPhenotypicFeature denotes PAH deficiencies

biored-valid-gpt-r-m

Id Subject Object Predicate Lexical cue
T1 35-40 GeneOrGeneProduct denotes BamHI
T2 49-64 DiseaseOrPhenotypicFeature denotes phenylketonuria
T3 66-91 DiseaseOrPhenotypicFeature denotes Classical phenylketonuria
T4 138-185 DiseaseOrPhenotypicFeature denotes deficiency of hepatic phenylalanine hydroxylase
T5 187-190 GeneOrGeneProduct denotes PAH
T6 223-228 GeneOrGeneProduct denotes BamHI
T7 272-275 GeneOrGeneProduct denotes PAH
T8 362-376 SequenceVariant denotes 272gly----stop
T9 381-394 SequenceVariant denotes 273ser----phe
T10 509-533 SequenceVariant denotes RFLP haplotype 7 alleles
T11 606-609 DiseaseOrPhenotypicFeature denotes PKU
T12 684-700 DiseaseOrPhenotypicFeature denotes PAH deficiencies

biored-valid-gemini-r-m

Id Subject Object Predicate Lexical cue
T1 49-64 DiseaseOrPhenotypicFeature denotes phenylketonuria
T2 66-91 DiseaseOrPhenotypicFeature denotes Classical phenylketonuria
T3 160-185 GeneOrGeneProduct denotes phenylalanine hydroxylase
T4 187-190 GeneOrGeneProduct denotes PAH
T5 362-376 SequenceVariant denotes 272gly----stop
T6 381-394 SequenceVariant denotes 273ser----phe
T7 509-533 SequenceVariant denotes RFLP haplotype 7 alleles
T8 606-609 DiseaseOrPhenotypicFeature denotes PKU
T9 684-700 DiseaseOrPhenotypicFeature denotes PAH deficiencies

biored-valid-deepseek-r-m

Id Subject Object Predicate Lexical cue
T1 49-64 DiseaseOrPhenotypicFeature denotes phenylketonuria
T2 160-185 GeneOrGeneProduct denotes phenylalanine hydroxylase
T3 187-190 GeneOrGeneProduct denotes PAH
T4 362-376 SequenceVariant denotes 272gly----stop
T5 381-394 SequenceVariant denotes 273ser----phe
T6 606-609 DiseaseOrPhenotypicFeature denotes PKU

NCBI-Disease-Train

Id Subject Object Predicate Lexical cue database_id
T3337 49-64 SpecificDisease denotes phenylketonuria D010661
T3338 66-91 SpecificDisease denotes Classical phenylketonuria D010661
T3339 98-125 DiseaseClass denotes autosomal recessive disease D030342
T3340 138-185 SpecificDisease denotes deficiency of hepatic phenylalanine hydroxylase OMIM:261600
T3341 606-609 SpecificDisease denotes PKU D010661
T3342 684-700 SpecificDisease denotes PAH deficiencies OMIM:261600

NCBI-Disease-Corpus-All

Id Subject Object Predicate Lexical cue database_id
T3337 49-64 SpecificDisease denotes phenylketonuria D010661
T3338 66-91 SpecificDisease denotes Classical phenylketonuria D010661
T3339 98-125 DiseaseClass denotes autosomal recessive disease D030342
T3340 138-185 SpecificDisease denotes deficiency of hepatic phenylalanine hydroxylase OMIM:261600
T3341 606-609 SpecificDisease denotes PKU D010661
T3342 684-700 SpecificDisease denotes PAH deficiencies OMIM:261600

NCBI-Disease-Corpus-2stage-All

Id Subject Object Predicate Lexical cue
T1 49-64 SpecificDisease denotes phenylketonuria
T2 76-91 SpecificDisease denotes phenylketonuria
T3 606-609 SpecificDisease denotes PKU

NCBI-Disease-Corpus-rezarta-All

Id Subject Object Predicate Lexical cue
T1 49-64 SpecificDisease denotes phenylketonuria
T2 76-91 SpecificDisease denotes phenylketonuria
T3 606-609 SpecificDisease denotes PKU

NCBI-Disease-Corpus-4oGuideline-All

Id Subject Object Predicate Lexical cue
T1 49-64 SpecificDisease denotes phenylketonuria
T2 66-91 SpecificDisease denotes Classical phenylketonuria
T3 98-125 DiseaseClass denotes autosomal recessive disease
T4 606-609 SpecificDisease denotes PKU

NCBI-Disease-Corpus-Simple-All

Id Subject Object Predicate Lexical cue
T1 49-64 SpecificDisease denotes phenylketonuria
T2 66-91 SpecificDisease denotes Classical phenylketonuria
T3 118-125 DiseaseClass denotes disease
T4 606-609 SpecificDisease denotes PKU