> top > docs > PubMed:16682641 > annotations

PubMed:16682641 JSONTXT

Annnotations TAB JSON ListView MergeView

OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 345-349 http://identifiers.org/oryzabase.gene/255 denotes Nr-2
T2 733-737 http://identifiers.org/oryzabase.gene/255 denotes Nr-2
T3 845-849 http://identifiers.org/oryzabase.gene/255 denotes Nr-2
T4 935-939 http://identifiers.org/oryzabase.gene/255 denotes Nr-2
T5 1099-1103 http://identifiers.org/oryzabase.gene/255 denotes Nr-2
T6 1237-1241 http://identifiers.org/oryzabase.gene/255 denotes Nr-2

OryzaGP_2022

Id Subject Object Predicate Lexical cue
T1 1313-1330 http://identifiers.org/oryzabase.gene/9857 denotes ethylene receptor

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 345-349 hunflair:NA:Gene denotes Nr-2
M_1 733-737 hunflair:NA:Gene denotes Nr-2
M_2 845-849 hunflair:NA:Gene denotes Nr-2
M_3 935-939 hunflair:NA:Gene denotes Nr-2
M_4 1099-1103 hunflair:NA:Gene denotes Nr-2
M_5 1237-1241 hunflair:NA:Gene denotes Nr-2
M_6 905-907 hunflair:NA:Gene denotes GR
M_7 1375-1377 hunflair:NA:Gene denotes GR
M_8 1397-1399 hunflair:NA:Gene denotes GR
M_9 103-111 hunflair:NA:Chemical denotes ethylene
M_10 259-267 hunflair:NA:Chemical denotes ethylene
M_11 394-402 hunflair:NA:Chemical denotes ethylene
M_12 461-469 hunflair:NA:Chemical denotes ethylene
M_13 1000-1008 hunflair:NA:Chemical denotes ethylene
M_14 1066-1074 hunflair:NA:Chemical denotes ethylene
M_15 1206-1214 hunflair:NA:Chemical denotes ethylene
M_16 1313-1321 hunflair:NA:Chemical denotes ethylene
M_17 1434-1442 hunflair:NA:Chemical denotes ethylene
M_18 1521-1529 hunflair:NA:Chemical denotes ethylene
M_19 1570-1578 hunflair:NA:Chemical denotes ethylene
M_20 331-343 hunflair:NA:Gene denotes Never-ripe 2
M_21 16-22 hunflair:NA:Species denotes tomato
M_22 177-183 hunflair:NA:Species denotes tomato
M_23 362-368 hunflair:NA:Species denotes tomato
M_24 1088-1094 hunflair:NA:Species denotes tomato
M_25 1334-1340 hunflair:NA:Species denotes tomato
M_26 23-33 hunflair:NA:Gene denotes Green-ripe
M_27 311-321 hunflair:NA:Gene denotes Green-ripe
M_28 897-907 hunflair:NA:Gene denotes CaMV35::GR
M_29 323-325 hunflair:NA:Gene denotes Gr
M_30 730-732 hunflair:NA:Gene denotes Gr
M_31 842-844 hunflair:NA:Gene denotes Gr
M_32 932-934 hunflair:NA:Gene denotes Gr
M_33 1096-1098 hunflair:NA:Gene denotes Gr
M_34 1234-1236 hunflair:NA:Gene denotes Gr

OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 669-671 http://identifiers.org/oryzabase.gene/870 denotes bp
T2 1313-1330 http://identifiers.org/oryzabase.gene/9858 denotes ethylene receptor
T51431 1313-1330 http://identifiers.org/ricegap/LOC_Os05g06320 denotes ethylene receptor
T44722 1313-1330 http://identifiers.org/rapdb.locus/Os05g0155200 denotes ethylene receptor
M_0 345-349 hunflair:NA:Gene denotes Nr-2
M_1 733-737 hunflair:NA:Gene denotes Nr-2
M_2 845-849 hunflair:NA:Gene denotes Nr-2
M_3 935-939 hunflair:NA:Gene denotes Nr-2
M_4 1099-1103 hunflair:NA:Gene denotes Nr-2
M_5 1237-1241 hunflair:NA:Gene denotes Nr-2
M_6 905-907 hunflair:NA:Gene denotes GR
M_7 1375-1377 hunflair:NA:Gene denotes GR
M_8 1397-1399 hunflair:NA:Gene denotes GR
M_9 103-111 hunflair:NA:Chemical denotes ethylene
M_10 259-267 hunflair:NA:Chemical denotes ethylene
M_11 394-402 hunflair:NA:Chemical denotes ethylene
M_12 461-469 hunflair:NA:Chemical denotes ethylene
M_13 1000-1008 hunflair:NA:Chemical denotes ethylene
M_14 1066-1074 hunflair:NA:Chemical denotes ethylene
M_15 1206-1214 hunflair:NA:Chemical denotes ethylene
M_16 1313-1321 hunflair:NA:Chemical denotes ethylene
M_17 1434-1442 hunflair:NA:Chemical denotes ethylene
M_18 1521-1529 hunflair:NA:Chemical denotes ethylene
M_19 1570-1578 hunflair:NA:Chemical denotes ethylene
M_20 331-343 hunflair:NA:Gene denotes Never-ripe 2
M_21 16-22 hunflair:NA:Species denotes tomato
M_22 177-183 hunflair:NA:Species denotes tomato
M_23 362-368 hunflair:NA:Species denotes tomato
M_24 1088-1094 hunflair:NA:Species denotes tomato
M_25 1334-1340 hunflair:NA:Species denotes tomato
M_26 23-33 hunflair:NA:Gene denotes Green-ripe
M_27 311-321 hunflair:NA:Gene denotes Green-ripe
M_28 897-907 hunflair:NA:Gene denotes CaMV35::GR
M_29 323-325 hunflair:NA:Gene denotes Gr
M_30 730-732 hunflair:NA:Gene denotes Gr
M_31 842-844 hunflair:NA:Gene denotes Gr
M_32 932-934 hunflair:NA:Gene denotes Gr
M_33 1096-1098 hunflair:NA:Gene denotes Gr
M_34 1234-1236 hunflair:NA:Gene denotes Gr

Trait curation

Id Subject Object Predicate Lexical cue
T1 323-325 142844 denotes Gr
T2 331-341 1357028 denotes Never-ripe
T3 345-347 1356831 denotes Nr
T4 730-732 142844 denotes Gr
T5 733-735 1356831 denotes Nr
T6 842-844 142844 denotes Gr
T7 845-847 1356831 denotes Nr
T8 905-907 142844 denotes GR
T9 932-934 142844 denotes Gr
T10 935-937 1356831 denotes Nr
T11 1096-1098 142844 denotes Gr
T12 1099-1101 1356831 denotes Nr
T13 1234-1236 142844 denotes Gr
T14 1237-1239 1356831 denotes Nr
T15 1297-1299 1356831 denotes Nr
T16 1301-1311 1357028 denotes Never-ripe
T17 1375-1377 142844 denotes GR
T18 1397-1399 142844 denotes GR

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-122 Sentence denotes Ripening in the tomato Green-ripe mutant is inhibited by ectopic expression of a protein that disrupts ethylene signaling.
T2 123-268 Sentence denotes To achieve full ripening, climacteric fruits, such as tomato require synthesis, perception and signal transduction of the plant hormone ethylene.
T3 269-435 Sentence denotes The nonripening phenotype of the dominant Green-ripe (Gr) and Never-ripe 2 (Nr-2) mutants of tomato is the result of reduced ethylene responsiveness in fruit tissues.
T4 436-606 Sentence denotes In addition, a subset of ethylene responses associated with floral senescence, abscission, and root elongation are also impacted in mutant plants, but to a lesser extent.
T5 607-744 Sentence denotes Using positional cloning, we have identified an identical 334-bp deletion in a gene of unknown biochemical function at the Gr/Nr-2 locus.
T6 745-894 Sentence denotes Consistent with a dominant gain of function mutation, this deletion causes ectopic expression of Gr/Nr-2, which in turn leads to ripening inhibition.
T7 895-1095 Sentence denotes A CaMV35::GR transgene recreates the Gr/Nr-2 mutant phenotype but does not lead to a global reduction in ethylene responsiveness, suggesting tissue-specific modulation of ethylene responses in tomato.
T8 1096-1225 Sentence denotes Gr/Nr-2 encodes an evolutionary conserved protein of unknown biochemical function that we associate here with ethylene signaling.
T9 1226-1378 Sentence denotes Because Gr/Nr-2 has no sequence homology with the previously described Nr (Never-ripe) ethylene receptor of tomato we now refer to this gene only as GR.
T10 1379-1613 Sentence denotes Identification of GR expands the current repertoire of ethylene signaling components in plants and provides a tool for further elucidation of ethylene response mechanisms and for controlling ethylene signal specificity in crop plants.