PubMed:16540530 / 1450-2150
Annnotations
Glycan-Motif
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T6 | 456-469 | https://glytoucan.org/Structures/Glycans/G00067MO | denotes | blood group B |
| T7 | 456-469 | https://glytoucan.org/Structures/Glycans/G26934CO | denotes | blood group B |
| T8 | 456-469 | https://glytoucan.org/Structures/Glycans/G41865GQ | denotes | blood group B |
| T9 | 456-469 | https://glytoucan.org/Structures/Glycans/G60395SO | denotes | blood group B |
| T10 | 456-469 | https://glytoucan.org/Structures/Glycans/G65112QB | denotes | blood group B |
| T11 | 665-674 | https://glytoucan.org/Structures/Glycans/G65889KE | denotes | galactose |
| T12 | 665-674 | https://glytoucan.org/Structures/Glycans/G68158BT | denotes | galactose |
GlyCosmos6-Glycan-Motif-Image
| Id | Subject | Object | Predicate | Lexical cue | image |
|---|---|---|---|---|---|
| T6 | 456-469 | Glycan_Motif | denotes | blood group B | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G65112QB|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G60395SO|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G41865GQ|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G26934CO|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00067MO |
| T11 | 665-674 | Glycan_Motif | denotes | galactose | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G68158BT|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G65889KE |
Glycosmos6-MAT
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T5 | 456-461 | http://purl.obolibrary.org/obo/MAT_0000083 | denotes | blood |
| T6 | 456-461 | http://purl.obolibrary.org/obo/MAT_0000315 | denotes | blood |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| TextSentencer_T10 | 0-700 | Sentence | denotes | It is concluded that (1) Galbeta1-3/4GlcNAc and other Galbeta1-related oligosaccharides with alpha1-3 extensions are essential for binding, their polyvalent form in cellular glycoconjugates being a key recognition force for galectin-5; (2) the combining site of galectin-5 appears to be of a shallow-groove type sufficiently large to accommodate a substituted beta-galactoside, especially with alpha-anomeric extension at the non-reducing end (e.g., human blood group B-active II and B-active IIbeta1-3L); (3) the preference within beta-anomeric positioning is Galbeta1-4 > or = Galbeta1-3 > Galbeta1-6; and (4) hydrophobic interactions in the vicinity of the core galactose unit can enhance binding. |
| T10 | 0-700 | Sentence | denotes | It is concluded that (1) Galbeta1-3/4GlcNAc and other Galbeta1-related oligosaccharides with alpha1-3 extensions are essential for binding, their polyvalent form in cellular glycoconjugates being a key recognition force for galectin-5; (2) the combining site of galectin-5 appears to be of a shallow-groove type sufficiently large to accommodate a substituted beta-galactoside, especially with alpha-anomeric extension at the non-reducing end (e.g., human blood group B-active II and B-active IIbeta1-3L); (3) the preference within beta-anomeric positioning is Galbeta1-4 > or = Galbeta1-3 > Galbeta1-6; and (4) hydrophobic interactions in the vicinity of the core galactose unit can enhance binding. |
| T10 | 0-700 | Sentence | denotes | It is concluded that (1) Galbeta1-3/4GlcNAc and other Galbeta1-related oligosaccharides with alpha1-3 extensions are essential for binding, their polyvalent form in cellular glycoconjugates being a key recognition force for galectin-5; (2) the combining site of galectin-5 appears to be of a shallow-groove type sufficiently large to accommodate a substituted beta-galactoside, especially with alpha-anomeric extension at the non-reducing end (e.g., human blood group B-active II and B-active IIbeta1-3L); (3) the preference within beta-anomeric positioning is Galbeta1-4 > or = Galbeta1-3 > Galbeta1-6; and (4) hydrophobic interactions in the vicinity of the core galactose unit can enhance binding. |
GlyCosmos6-Glycan-Motif-Structure
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T6 | 456-469 | https://glytoucan.org/Structures/Glycans/G00067MO | denotes | blood group B |
| T7 | 456-469 | https://glytoucan.org/Structures/Glycans/G26934CO | denotes | blood group B |
| T8 | 456-469 | https://glytoucan.org/Structures/Glycans/G41865GQ | denotes | blood group B |
| T9 | 456-469 | https://glytoucan.org/Structures/Glycans/G60395SO | denotes | blood group B |
| T10 | 456-469 | https://glytoucan.org/Structures/Glycans/G65112QB | denotes | blood group B |
| T11 | 665-674 | https://glytoucan.org/Structures/Glycans/G65889KE | denotes | galactose |
| T12 | 665-674 | https://glytoucan.org/Structures/Glycans/G68158BT | denotes | galactose |
GlycoBiology-NCBITAXON
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T4 | 63-70 | http://purl.bioontology.org/ontology/NCBITAXON/353209 | denotes | related |
| T5 | 360-364 | http://purl.bioontology.org/ontology/NCBITAXON/3554 | denotes | beta |
| T6 | 360-364 | http://purl.bioontology.org/ontology/NCBITAXON/158455 | denotes | beta |
| T7 | 426-429 | http://purl.bioontology.org/ontology/NCBITAXON/604139 | denotes | non |
| T8 | 462-467 | http://purl.bioontology.org/ontology/STY/T096 | denotes | group |
| T9 | 532-536 | http://purl.bioontology.org/ontology/NCBITAXON/3554 | denotes | beta |
| T10 | 532-536 | http://purl.bioontology.org/ontology/NCBITAXON/158455 | denotes | beta |
GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T5 | 468-476 | http://purl.obolibrary.org/obo/GO_0004066 | denotes | B-active |
| T6 | 484-492 | http://purl.obolibrary.org/obo/GO_0004066 | denotes | B-active |
| T7 | 165-173 | http://purl.obolibrary.org/obo/GO_0007349 | denotes | cellular |
GO-MF
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T4 | 131-138 | http://purl.obolibrary.org/obo/GO_0070026 | denotes | binding |
| T5 | 692-699 | http://purl.obolibrary.org/obo/GO_0070026 | denotes | binding |
| T7 | 131-138 | http://purl.obolibrary.org/obo/GO_0003680 | denotes | binding |
| T8 | 692-699 | http://purl.obolibrary.org/obo/GO_0003680 | denotes | binding |
| T10 | 131-138 | http://purl.obolibrary.org/obo/GO_0017091 | denotes | binding |
| T11 | 692-699 | http://purl.obolibrary.org/obo/GO_0017091 | denotes | binding |
| T13 | 131-138 | http://purl.obolibrary.org/obo/GO_0005488 | denotes | binding |
| T14 | 692-699 | http://purl.obolibrary.org/obo/GO_0005488 | denotes | binding |
| T15 | 684-699 | http://purl.obolibrary.org/obo/GO_0035326 | denotes | enhance binding |
GO-CC
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T4 | 300-306 | http://purl.obolibrary.org/obo/GO_0097610 | denotes | groove |
| T5 | 660-664 | http://purl.obolibrary.org/obo/GO_0019013 | denotes | core |
UBERON-AE
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T4 | 456-461 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
| T5 | 102-112 | http://purl.obolibrary.org/obo/UBERON_2000106 | denotes | extensions |
| T6 | 409-418 | http://purl.obolibrary.org/obo/UBERON_2000106 | denotes | extension |
GlycoBiology-MAT
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T5 | 456-461 | http://purl.obolibrary.org/obo/MAT_0000315 | denotes | blood |
| T6 | 456-461 | http://purl.obolibrary.org/obo/MAT_0000083 | denotes | blood |
GlycoBiology-Motifs
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T4 | 456-467 | http://rdf.glycoinfo.org/glycan/G00066MO | denotes | blood group |
| T8 | 456-469 | http://rdf.glycoinfo.org/glycan/G00067MO | denotes | blood group B |
GlyTouCan-IUPAC
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| GlycanIUPAC_T617 | 426-429 | "http://rdf.glycoinfo.org/glycan/G02780QX" | denotes | non |
| GlycanIUPAC_T618 | 426-429 | "http://rdf.glycoinfo.org/glycan/G18425DX" | denotes | non |
| GlycanIUPAC_T619 | 426-429 | "http://rdf.glycoinfo.org/glycan/G18630JE" | denotes | non |
| GlycanIUPAC_T620 | 426-429 | "http://rdf.glycoinfo.org/glycan/G01004IT" | denotes | non |
| GlycanIUPAC_T621 | 426-429 | "http://rdf.glycoinfo.org/glycan/G87301QZ" | denotes | non |
| GlycanIUPAC_T622 | 426-429 | "http://rdf.glycoinfo.org/glycan/G39790GW" | denotes | non |
| GlycanIUPAC_T623 | 426-429 | "http://rdf.glycoinfo.org/glycan/G42928BB" | denotes | non |
| GlycanIUPAC_T624 | 426-429 | "http://rdf.glycoinfo.org/glycan/G51134HC" | denotes | non |
| GlycanIUPAC_T625 | 426-429 | "http://rdf.glycoinfo.org/glycan/G68183GR" | denotes | non |
| GlycanIUPAC_T626 | 426-429 | "http://rdf.glycoinfo.org/glycan/G46883FA" | denotes | non |
| GlycanIUPAC_T627 | 426-429 | "http://rdf.glycoinfo.org/glycan/G54702VY" | denotes | non |
performance-test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| PD-UBERON-AE-B_T4 | 456-461 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
| PD-UBERON-AE-B_T5 | 102-112 | http://purl.obolibrary.org/obo/UBERON_2000106 | denotes | extensions |
| PD-UBERON-AE-B_T6 | 409-418 | http://purl.obolibrary.org/obo/UBERON_2000106 | denotes | extension |
Anatomy-MAT
| Id | Subject | Object | Predicate | Lexical cue | mat_id |
|---|---|---|---|---|---|
| T5 | 456-461 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/MAT_0000083|http://purl.obolibrary.org/obo/MAT_0000315 |
Lectin-Jamboree-Sentence
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T10 | 0-700 | Sentence | denotes | It is concluded that (1) Galbeta1-3/4GlcNAc and other Galbeta1-related oligosaccharides with alpha1-3 extensions are essential for binding, their polyvalent form in cellular glycoconjugates being a key recognition force for galectin-5; (2) the combining site of galectin-5 appears to be of a shallow-groove type sufficiently large to accommodate a substituted beta-galactoside, especially with alpha-anomeric extension at the non-reducing end (e.g., human blood group B-active II and B-active IIbeta1-3L); (3) the preference within beta-anomeric positioning is Galbeta1-4 > or = Galbeta1-3 > Galbeta1-6; and (4) hydrophobic interactions in the vicinity of the core galactose unit can enhance binding. |
NCBITAXON
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| T3 | 450-455 | OrganismTaxon | denotes | human | 9606 |
Anatomy-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T4 | 102-112 | Body_part | denotes | extensions | http://purl.obolibrary.org/obo/UBERON_2000106 |
| T5 | 300-306 | Body_part | denotes | groove | http://purl.obolibrary.org/obo/UBERON_0004704|http://purl.obolibrary.org/obo/UBERON_0006846|http://purl.obolibrary.org/obo/UBERON_0014764 |
| T8 | 409-418 | Body_part | denotes | extension | http://purl.obolibrary.org/obo/UBERON_2000106 |
| T9 | 456-461 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |