PubMed:16510493
Annnotations
Glycosmos6-MAT
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 60-71 | http://purl.obolibrary.org/obo/MAT_0000190 | denotes | prokaryotic |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| TextSentencer_T1 | 0-80 | Sentence | denotes | Asparagine-linked protein glycosylation: from eukaryotic to prokaryotic systems. |
| TextSentencer_T2 | 81-188 | Sentence | denotes | Asparagine-linked protein glycosylation is a prevalent protein modification reaction in eukaryotic systems. |
| TextSentencer_T3 | 189-408 | Sentence | denotes | This process involves the co-translational transfer of a pre-assembled tetradecasaccharide from a dolichyl-pyrophosphate donor to the asparagine side chain of nascent proteins at the endoplasmic reticulum (ER) membrane. |
| TextSentencer_T4 | 409-535 | Sentence | denotes | Recently, the first such system of N-linked glycosylation was discovered in the Gram-negative bacterium, Campylobacter jejuni. |
| TextSentencer_T5 | 536-730 | Sentence | denotes | Glycosylation in this organism involves the transfer of a heptasaccharide from an undecaprenyl-pyrophosphate donor to the asparagine side chain of proteins at the bacterial periplasmic membrane. |
| TextSentencer_T6 | 731-956 | Sentence | denotes | Here we provide a detailed comparison of the machinery involved in the N-linked glycosylation systems of eukaryotic organisms, exemplified by the yeast Saccharomyces cerevisiae, with that of the bacterial system in C. jejuni. |
| TextSentencer_T7 | 957-1178 | Sentence | denotes | The two systems display significant similarities and the relative simplicity of the bacterial glycosylation process could provide a model system that can be used to decipher the complex eukaryotic glycosylation machinery. |
| T1 | 0-80 | Sentence | denotes | Asparagine-linked protein glycosylation: from eukaryotic to prokaryotic systems. |
| T2 | 81-188 | Sentence | denotes | Asparagine-linked protein glycosylation is a prevalent protein modification reaction in eukaryotic systems. |
| T3 | 189-408 | Sentence | denotes | This process involves the co-translational transfer of a pre-assembled tetradecasaccharide from a dolichyl-pyrophosphate donor to the asparagine side chain of nascent proteins at the endoplasmic reticulum (ER) membrane. |
| T4 | 409-535 | Sentence | denotes | Recently, the first such system of N-linked glycosylation was discovered in the Gram-negative bacterium, Campylobacter jejuni. |
| T5 | 536-730 | Sentence | denotes | Glycosylation in this organism involves the transfer of a heptasaccharide from an undecaprenyl-pyrophosphate donor to the asparagine side chain of proteins at the bacterial periplasmic membrane. |
| T6 | 731-956 | Sentence | denotes | Here we provide a detailed comparison of the machinery involved in the N-linked glycosylation systems of eukaryotic organisms, exemplified by the yeast Saccharomyces cerevisiae, with that of the bacterial system in C. jejuni. |
| T7 | 957-1178 | Sentence | denotes | The two systems display significant similarities and the relative simplicity of the bacterial glycosylation process could provide a model system that can be used to decipher the complex eukaryotic glycosylation machinery. |
| T1 | 0-80 | Sentence | denotes | Asparagine-linked protein glycosylation: from eukaryotic to prokaryotic systems. |
| T2 | 81-188 | Sentence | denotes | Asparagine-linked protein glycosylation is a prevalent protein modification reaction in eukaryotic systems. |
| T3 | 189-408 | Sentence | denotes | This process involves the co-translational transfer of a pre-assembled tetradecasaccharide from a dolichyl-pyrophosphate donor to the asparagine side chain of nascent proteins at the endoplasmic reticulum (ER) membrane. |
| T4 | 409-535 | Sentence | denotes | Recently, the first such system of N-linked glycosylation was discovered in the Gram-negative bacterium, Campylobacter jejuni. |
| T5 | 536-730 | Sentence | denotes | Glycosylation in this organism involves the transfer of a heptasaccharide from an undecaprenyl-pyrophosphate donor to the asparagine side chain of proteins at the bacterial periplasmic membrane. |
| T6 | 731-956 | Sentence | denotes | Here we provide a detailed comparison of the machinery involved in the N-linked glycosylation systems of eukaryotic organisms, exemplified by the yeast Saccharomyces cerevisiae, with that of the bacterial system in C. jejuni. |
| T7 | 957-1178 | Sentence | denotes | The two systems display significant similarities and the relative simplicity of the bacterial glycosylation process could provide a model system that can be used to decipher the complex eukaryotic glycosylation machinery. |
GlycoBiology-PACDB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| _T1 | 514-534 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC257,LEC564 | denotes | Campylobacter jejuni |
| _T2 | 883-907 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC297 | denotes | Saccharomyces cerevisiae |
uniprot-human
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 395-397 | http://www.uniprot.org/uniprot/P03372 | denotes | ER |
uniprot-mouse
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 246-249 | http://www.uniprot.org/uniprot/Q99NH7 | denotes | pre |
| T2 | 395-397 | http://www.uniprot.org/uniprot/P19785 | denotes | ER |
GlycoBiology-NCBITAXON
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 46-56 | http://purl.bioontology.org/ontology/NCBITAXON/2759 | denotes | eukaryotic |
| T2 | 169-179 | http://purl.bioontology.org/ontology/NCBITAXON/2759 | denotes | eukaryotic |
| T3 | 215-217 | http://purl.bioontology.org/ontology/NCBITAXON/13893 | denotes | co |
| T4 | 489-512 | http://purl.bioontology.org/ontology/NCBITAXON/272903 | denotes | Gram-negative bacterium |
| T5 | 489-512 | http://purl.bioontology.org/ontology/NCBITAXON/203860 | denotes | Gram-negative bacterium |
| T6 | 489-512 | http://purl.bioontology.org/ontology/NCBITAXON/203859 | denotes | Gram-negative bacterium |
| T7 | 489-512 | http://purl.bioontology.org/ontology/NCBITAXON/203855 | denotes | Gram-negative bacterium |
| T8 | 489-512 | http://purl.bioontology.org/ontology/NCBITAXON/203850 | denotes | Gram-negative bacterium |
| T9 | 489-512 | http://purl.bioontology.org/ontology/NCBITAXON/203854 | denotes | Gram-negative bacterium |
| T10 | 489-512 | http://purl.bioontology.org/ontology/NCBITAXON/203853 | denotes | Gram-negative bacterium |
| T11 | 489-512 | http://purl.bioontology.org/ontology/NCBITAXON/170697 | denotes | Gram-negative bacterium |
| T12 | 489-512 | http://purl.bioontology.org/ontology/NCBITAXON/130804 | denotes | Gram-negative bacterium |
| T13 | 489-512 | http://purl.bioontology.org/ontology/NCBITAXON/245285 | denotes | Gram-negative bacterium |
| T14 | 489-512 | http://purl.bioontology.org/ontology/NCBITAXON/111956 | denotes | Gram-negative bacterium |
| T15 | 489-512 | http://purl.bioontology.org/ontology/NCBITAXON/170694 | denotes | Gram-negative bacterium |
| T16 | 489-512 | http://purl.bioontology.org/ontology/NCBITAXON/170693 | denotes | Gram-negative bacterium |
| T17 | 489-512 | http://purl.bioontology.org/ontology/NCBITAXON/170692 | denotes | Gram-negative bacterium |
| T18 | 489-512 | http://purl.bioontology.org/ontology/NCBITAXON/170689 | denotes | Gram-negative bacterium |
| T19 | 489-512 | http://purl.bioontology.org/ontology/NCBITAXON/662100 | denotes | Gram-negative bacterium |
| T20 | 489-512 | http://purl.bioontology.org/ontology/NCBITAXON/170698 | denotes | Gram-negative bacterium |
| T21 | 489-512 | http://purl.bioontology.org/ontology/NCBITAXON/130805 | denotes | Gram-negative bacterium |
| T22 | 503-512 | http://purl.bioontology.org/ontology/NCBITAXON/538072 | denotes | bacterium |
| T23 | 503-512 | http://purl.bioontology.org/ontology/NCBITAXON/400048 | denotes | bacterium |
| T24 | 503-512 | http://purl.bioontology.org/ontology/NCBITAXON/538075 | denotes | bacterium |
| T25 | 503-512 | http://purl.bioontology.org/ontology/NCBITAXON/336405 | denotes | bacterium |
| T26 | 503-512 | http://purl.bioontology.org/ontology/NCBITAXON/1730 | denotes | bacterium |
| T27 | 503-512 | http://purl.bioontology.org/ontology/NCBITAXON/674166 | denotes | bacterium |
| T28 | 503-512 | http://purl.bioontology.org/ontology/NCBITAXON/1144558 | denotes | bacterium |
| T29 | 503-512 | http://purl.bioontology.org/ontology/NCBITAXON/538076 | denotes | bacterium |
| T30 | 503-512 | http://purl.bioontology.org/ontology/NCBITAXON/538084 | denotes | bacterium |
| T31 | 503-512 | http://purl.bioontology.org/ontology/NCBITAXON/336404 | denotes | bacterium |
| T32 | 503-512 | http://purl.bioontology.org/ontology/NCBITAXON/336403 | denotes | bacterium |
| T33 | 503-512 | http://purl.bioontology.org/ontology/NCBITAXON/138290 | denotes | bacterium |
| T34 | 503-512 | http://purl.bioontology.org/ontology/NCBITAXON/336400 | denotes | bacterium |
| T35 | 503-512 | http://purl.bioontology.org/ontology/NCBITAXON/538117 | denotes | bacterium |
| T36 | 503-512 | http://purl.bioontology.org/ontology/NCBITAXON/538113 | denotes | bacterium |
| T37 | 503-512 | http://purl.bioontology.org/ontology/NCBITAXON/538108 | denotes | bacterium |
| T38 | 503-512 | http://purl.bioontology.org/ontology/NCBITAXON/538085 | denotes | bacterium |
| T39 | 503-512 | http://purl.bioontology.org/ontology/NCBITAXON/1368069 | denotes | bacterium |
| T40 | 503-512 | http://purl.bioontology.org/ontology/NCBITAXON/538104 | denotes | bacterium |
| T41 | 503-512 | http://purl.bioontology.org/ontology/NCBITAXON/538101 | denotes | bacterium |
| T42 | 503-512 | http://purl.bioontology.org/ontology/NCBITAXON/538099 | denotes | bacterium |
| T43 | 503-512 | http://purl.bioontology.org/ontology/NCBITAXON/538097 | denotes | bacterium |
| T44 | 503-512 | http://purl.bioontology.org/ontology/NCBITAXON/538091 | denotes | bacterium |
| T45 | 503-512 | http://purl.bioontology.org/ontology/NCBITAXON/538107 | denotes | bacterium |
| T46 | 514-534 | http://purl.bioontology.org/ontology/NCBITAXON/197 | denotes | Campylobacter jejuni |
| T47 | 836-846 | http://purl.bioontology.org/ontology/NCBITAXON/2759 | denotes | eukaryotic |
| T48 | 883-896 | http://purl.bioontology.org/ontology/NCBITAXON/4895 | denotes | Saccharomyces |
| T49 | 883-896 | http://purl.bioontology.org/ontology/NCBITAXON/36034 | denotes | Saccharomyces |
| T50 | 883-896 | http://purl.bioontology.org/ontology/NCBITAXON/4891 | denotes | Saccharomyces |
| T51 | 883-896 | http://purl.bioontology.org/ontology/NCBITAXON/4930 | denotes | Saccharomyces |
| T52 | 1143-1153 | http://purl.bioontology.org/ontology/NCBITAXON/2759 | denotes | eukaryotic |
GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 18-39 | http://purl.obolibrary.org/obo/GO_0006486 | denotes | protein glycosylation |
| T2 | 99-120 | http://purl.obolibrary.org/obo/GO_0006486 | denotes | protein glycosylation |
| T3 | 26-39 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | glycosylation |
| T4 | 107-120 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | glycosylation |
| T5 | 453-466 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | glycosylation |
| T6 | 811-824 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | glycosylation |
| T7 | 1051-1064 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | glycosylation |
| T8 | 536-549 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | Glycosylation |
| T9 | 136-156 | http://purl.obolibrary.org/obo/GO_0036211 | denotes | protein modification |
| T10 | 180-201 | http://purl.obolibrary.org/obo/GO_0003008 | denotes | systems. This process |
| T11 | 218-231 | http://purl.obolibrary.org/obo/GO_0006412 | denotes | translational |
| T12 | 246-249 | http://purl.obolibrary.org/obo/GO_0003904 | denotes | pre |
| T13 | 669-691 | http://purl.obolibrary.org/obo/GO_0035610 | denotes | side chain of proteins |
GO-CC
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 372-393 | http://purl.obolibrary.org/obo/GO_0005783 | denotes | endoplasmic reticulum |
| T2 | 395-397 | http://purl.obolibrary.org/obo/GO_0005783 | denotes | ER |
| T3 | 395-407 | http://purl.obolibrary.org/obo/GO_0005789 | denotes | ER) membrane |
| T4 | 399-407 | http://purl.obolibrary.org/obo/GO_0016020 | denotes | membrane |
| T5 | 721-729 | http://purl.obolibrary.org/obo/GO_0016020 | denotes | membrane |
| T6 | 709-720 | http://purl.obolibrary.org/obo/GO_0042597 | denotes | periplasmic |
UBERON-AE
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 558-566 | http://purl.obolibrary.org/obo/UBERON_0000062 | denotes | organism |
| T2 | 847-856 | http://purl.obolibrary.org/obo/UBERON_0000062 | denotes | organisms |
GlycoBiology-MAT
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 60-71 | http://purl.obolibrary.org/obo/MAT_0000190 | denotes | prokaryotic |
| T2 | 503-512 | http://purl.obolibrary.org/obo/MAT_0000191 | denotes | bacterium |
performance-test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| PD-UBERON-AE-B_T1 | 558-566 | http://purl.obolibrary.org/obo/UBERON_0000062 | denotes | organism |
| PD-UBERON-AE-B_T2 | 847-856 | http://purl.obolibrary.org/obo/UBERON_0000062 | denotes | organisms |
NCBITAXON
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| T1 | 514-534 | OrganismTaxon | denotes | Campylobacter jejuni | 197 |
| T2 | 883-907 | OrganismTaxon | denotes | Saccharomyces cerevisiae | 4932 |
Anatomy-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 384-393 | Body_part | denotes | reticulum | http://purl.obolibrary.org/obo/UBERON_0007361 |
| T2 | 399-407 | Body_part | denotes | membrane | http://purl.obolibrary.org/obo/GO_0016020|http://purl.obolibrary.org/obo/UBERON_0000094|http://purl.obolibrary.org/obo/UBERON_0000158 |
| T5 | 558-566 | Body_part | denotes | organism | http://purl.obolibrary.org/obo/UBERON_0000468 |
| T6 | 721-729 | Body_part | denotes | membrane | http://purl.obolibrary.org/obo/GO_0016020|http://purl.obolibrary.org/obo/UBERON_0000094|http://purl.obolibrary.org/obo/UBERON_0000158 |
| T9 | 847-856 | Body_part | denotes | organisms | http://purl.obolibrary.org/obo/UBERON_0000468 |
Anatomy-MAT
| Id | Subject | Object | Predicate | Lexical cue | mat_id |
|---|---|---|---|---|---|
| T1 | 60-71 | Body_part | denotes | prokaryotic | http://purl.obolibrary.org/obo/MAT_0000190 |