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Oryza-OGER

Id Subject Object Predicate Lexical cue
T1 10-13 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T2 10-13 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T3 36-47 http://purl.obolibrary.org/obo/GO_0009844 denotes germination
T4 51-55 http://id.nlm.nih.gov/mesh/D012275 denotes rice
T5 51-55 http://purl.bioontology.org/ontology/RXNORM/1311040 denotes rice
T6 51-55 http://www.ncbi.nlm.nih.gov/taxonomy/4530 denotes rice
T7 69-73 http://purl.obolibrary.org/obo/SO_0000704 denotes gene
T8 74-77 http://purl.obolibrary.org/obo/PR_Q9NZC7 denotes for
T9 74-77 http://purl.obolibrary.org/obo/PR_000001036 denotes for
T10 80-96 http://www.uniprot.org/uniprot/P86516 denotes carboxypeptidase
T11 102-118 http://www.uniprot.org/uniprot/P86516 denotes carboxypeptidase
T12 119-123 http://purl.obolibrary.org/obo/SO_0000704 denotes gene
T13 129-133 http://id.nlm.nih.gov/mesh/D012275 denotes rice
T14 129-133 http://purl.bioontology.org/ontology/RXNORM/1311040 denotes rice
T15 129-133 http://www.ncbi.nlm.nih.gov/taxonomy/4530 denotes rice
T16 134-137 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T17 134-137 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T18 152-156 http://id.nlm.nih.gov/mesh/D018076 denotes cDNA
T19 152-156 http://purl.obolibrary.org/obo/SO_0000756 denotes cDNA
T20 183-186 http://purl.obolibrary.org/obo/PR_P21750 denotes Sal
T21 183-186 http://purl.obolibrary.org/obo/PR_P39770 denotes Sal
T22 183-186 http://web.expasy.org/cellosaurus/CVCL_S862 denotes Sal
T23 183-186 http://www.uniprot.org/uniprot/P81608 denotes Sal
T24 183-186 http://purl.obolibrary.org/obo/PR_000014438 denotes Sal
T25 183-186 http://purl.obolibrary.org/obo/PR_Q62255 denotes Sal
T26 183-186 http://purl.obolibrary.org/obo/CHEBI_30762 denotes Sal
T27 183-186 http://web.expasy.org/cellosaurus/CVCL_7209 denotes Sal
T28 183-186 http://www.uniprot.org/uniprot/Q9PVW8 denotes Sal
T29 187-191 http://web.expasy.org/cellosaurus/CVCL_2H89 denotes I 11
T30 187-191 http://purl.obolibrary.org/obo/CHEBI_76380 denotes I 11
T31 187-191 http://id.nlm.nih.gov/mesh/C026760 denotes I 11
T32 187-191 http://id.nlm.nih.gov/mesh/C026760 denotes I 11
T33 192-193 AMT1;3 denotes 2
T34 197-205 http://purl.obolibrary.org/obo/SO_0000731 denotes fragment
T35 209-212 http://id.nlm.nih.gov/mesh/D004247 denotes DNA
T36 209-212 http://purl.obolibrary.org/obo/SO_0000352 denotes DNA
T37 209-212 http://purl.obolibrary.org/obo/GO_0005574 denotes DNA
T38 209-212 http://purl.obolibrary.org/obo/CHEBI_16991 denotes DNA
T39 213-219 http://purl.obolibrary.org/obo/SO_0000788 denotes cloned
T40 245-251 http://purl.obolibrary.org/obo/SO_0001026 denotes genome
T41 284-287 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T42 284-287 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T43 291-309 http://purl.obolibrary.org/obo/SO_0000236 denotes open reading frame
T44 296-309 http://purl.obolibrary.org/obo/SO_0000717 denotes reading frame
T45 327-332 http://purl.obolibrary.org/obo/CHEBI_46882 denotes amino
T46 327-338 http://purl.bioontology.org/ontology/RXNORM/1873122 denotes amino acids
T47 327-338 http://id.nlm.nih.gov/mesh/D000596 denotes amino acids
T48 327-338 http://id.nlm.nih.gov/mesh/D000596 denotes amino acids
T49 327-338 http://purl.obolibrary.org/obo/CHEBI_33709 denotes amino acids
T50 327-338 http://purl.obolibrary.org/obo/CHEBI_33704 denotes amino acids
T51 333-338 http://id.nlm.nih.gov/mesh/D000143 denotes acids
T52 333-338 http://purl.obolibrary.org/obo/CHEBI_37527 denotes acids
T53 333-338 http://id.nlm.nih.gov/mesh/D000143 denotes acids
T54 376-379 http://purl.obolibrary.org/obo/PR_Q9NZC7 denotes for
T55 376-379 http://purl.obolibrary.org/obo/PR_000001036 denotes for
T56 384-400 http://www.uniprot.org/uniprot/P86516 denotes carboxypeptidase
T57 406-410 http://id.nlm.nih.gov/mesh/D012275 denotes rice
T58 406-410 http://purl.bioontology.org/ontology/RXNORM/1311040 denotes rice
T59 406-410 http://www.ncbi.nlm.nih.gov/taxonomy/4530 denotes rice
T60 411-414 http://purl.obolibrary.org/obo/PR_000017371 denotes was
T61 411-414 http://purl.obolibrary.org/obo/PR_P42768 denotes was
T62 411-414 http://purl.obolibrary.org/obo/PR_P70315 denotes was
T63 411-414 http://id.nlm.nih.gov/mesh/D014923 denotes was
T64 449-455 http://id.nlm.nih.gov/mesh/D012694 denotes serine
T65 449-455 http://purl.obolibrary.org/obo/CHEBI_17822 denotes serine
T66 449-455 http://purl.obolibrary.org/obo/SO_0001444 denotes serine
T67 449-455 http://purl.bioontology.org/ontology/RXNORM/9671 denotes serine
T68 449-455 http://id.nlm.nih.gov/mesh/D012694 denotes serine
T69 449-455 http://purl.obolibrary.org/obo/CHEBI_17115 denotes serine
T70 456-473 http://id.nlm.nih.gov/mesh/D002268 denotes carboxypeptidases
T71 479-485 http://www.ncbi.nlm.nih.gov/taxonomy/4513 denotes barley
T72 479-485 http://purl.bioontology.org/ontology/RXNORM/862453 denotes barley
T73 479-485 http://id.nlm.nih.gov/mesh/D001467 denotes barley
T74 486-489 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T75 486-489 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T76 490-495 http://purl.bioontology.org/ontology/RXNORM/901299 denotes wheat
T77 490-495 http://purl.bioontology.org/ontology/RXNORM/1441652 denotes wheat
T78 490-495 http://id.nlm.nih.gov/mesh/D014908 denotes wheat
T79 490-495 http://www.ncbi.nlm.nih.gov/taxonomy/4565 denotes wheat
T80 527-532 http://purl.obolibrary.org/obo/CHEBI_46882 denotes amino
T81 527-537 http://purl.obolibrary.org/obo/SO_0001237 denotes amino acid
T82 527-537 http://purl.obolibrary.org/obo/CHEBI_33709 denotes amino acid
T83 527-537 http://purl.obolibrary.org/obo/CHEBI_33704 denotes amino acid
T84 533-537 http://purl.obolibrary.org/obo/CHEBI_37527 denotes acid
T85 538-546 http://purl.obolibrary.org/obo/SO_0000001 denotes sequence
T86 564-581 http://id.nlm.nih.gov/mesh/D002268 denotes carboxypeptidases
T87 587-593 http://www.ncbi.nlm.nih.gov/taxonomy/4513 denotes barley
T88 587-593 http://purl.bioontology.org/ontology/RXNORM/862453 denotes barley
T89 587-593 http://id.nlm.nih.gov/mesh/D001467 denotes barley
T90 594-597 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T91 594-597 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T92 598-603 http://purl.bioontology.org/ontology/RXNORM/901299 denotes wheat
T93 598-603 http://purl.bioontology.org/ontology/RXNORM/1441652 denotes wheat
T94 598-603 http://id.nlm.nih.gov/mesh/D014908 denotes wheat
T95 598-603 http://www.ncbi.nlm.nih.gov/taxonomy/4565 denotes wheat
T96 604-607 http://purl.obolibrary.org/obo/PR_000017371 denotes was
T97 604-607 http://purl.obolibrary.org/obo/PR_P42768 denotes was
T98 604-607 http://purl.obolibrary.org/obo/PR_P70315 denotes was
T99 604-607 http://id.nlm.nih.gov/mesh/D014923 denotes was
T100 611-612 AMT1;2 denotes 3
T101 614-617 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T102 614-617 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T103 621-622 AMT1;3 denotes 2
T104 659-663 http://id.nlm.nih.gov/mesh/D012333 denotes mRNA
T105 659-663 http://purl.obolibrary.org/obo/SO_0000234 denotes mRNA
T106 659-663 http://purl.obolibrary.org/obo/CHEBI_33699 denotes mRNA
T107 664-667 http://purl.obolibrary.org/obo/PR_Q9NZC7 denotes for
T108 664-667 http://purl.obolibrary.org/obo/PR_000001036 denotes for
T109 672-676 http://id.nlm.nih.gov/mesh/D012275 denotes rice
T110 672-676 http://purl.bioontology.org/ontology/RXNORM/1311040 denotes rice
T111 672-676 http://www.ncbi.nlm.nih.gov/taxonomy/4530 denotes rice
T112 677-693 http://www.uniprot.org/uniprot/P86516 denotes carboxypeptidase
T113 694-697 http://purl.obolibrary.org/obo/PR_000017371 denotes was
T114 694-697 http://purl.obolibrary.org/obo/PR_P42768 denotes was
T115 694-697 http://purl.obolibrary.org/obo/PR_P70315 denotes was
T116 694-697 http://id.nlm.nih.gov/mesh/D014923 denotes was
T117 751-759 http://id.nlm.nih.gov/mesh/C000624173 denotes aleurone
T118 800-803 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T119 800-803 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T120 832-836 http://id.nlm.nih.gov/mesh/D012333 denotes mRNA
T121 832-836 http://purl.obolibrary.org/obo/SO_0000234 denotes mRNA
T122 832-836 http://purl.obolibrary.org/obo/CHEBI_33699 denotes mRNA
T123 851-854 http://purl.obolibrary.org/obo/PR_000017371 denotes was
T124 851-854 http://purl.obolibrary.org/obo/PR_P42768 denotes was
T125 851-854 http://purl.obolibrary.org/obo/PR_P70315 denotes was
T126 851-854 http://id.nlm.nih.gov/mesh/D014923 denotes was
T127 867-883 http://id.nlm.nih.gov/mesh/C007842 denotes gibberellic acid
T128 867-883 http://id.nlm.nih.gov/mesh/C007842 denotes gibberellic acid
T129 867-883 http://purl.obolibrary.org/obo/CHEBI_28833 denotes gibberellic acid
T130 867-883 http://purl.obolibrary.org/obo/CHEBI_86644 denotes gibberellic acid
T131 879-883 http://purl.obolibrary.org/obo/CHEBI_37527 denotes acid
T132 889-892 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T133 889-892 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T134 913-917 http://id.nlm.nih.gov/mesh/D012333 denotes mRNA
T135 913-917 http://purl.obolibrary.org/obo/SO_0000234 denotes mRNA
T136 913-917 http://purl.obolibrary.org/obo/CHEBI_33699 denotes mRNA
T137 918-921 http://purl.obolibrary.org/obo/PR_000017371 denotes was
T138 918-921 http://purl.obolibrary.org/obo/PR_P42768 denotes was
T139 918-921 http://purl.obolibrary.org/obo/PR_P70315 denotes was
T140 918-921 http://id.nlm.nih.gov/mesh/D014923 denotes was
T141 935-948 http://purl.obolibrary.org/obo/CHEBI_28937 denotes abscisic acid
T142 935-948 http://purl.obolibrary.org/obo/CHEBI_22152 denotes abscisic acid
T143 935-948 ASR1 denotes abscisic acid
T144 935-948 http://purl.obolibrary.org/obo/CHEBI_2365 denotes abscisic acid
T145 935-948 http://purl.obolibrary.org/obo/CHEBI_62431 denotes abscisic acid
T146 935-948 ASR5 denotes abscisic acid
T147 935-948 http://id.nlm.nih.gov/mesh/D000040 denotes abscisic acid
T148 935-948 http://id.nlm.nih.gov/mesh/D000040 denotes abscisic acid
T149 944-948 http://purl.obolibrary.org/obo/CHEBI_37527 denotes acid
T150 950-953 http://purl.obolibrary.org/obo/CHEBI_28937 denotes ABA
T151 950-953 ASR1 denotes ABA
T152 950-953 http://purl.obolibrary.org/obo/CHEBI_2365 denotes ABA
T153 950-953 ASR4 denotes ABA
T154 950-953 ASR5 denotes ABA
T155 950-953 ASR2 denotes ABA
T156 950-953 http://www.uniprot.org/uniprot/Q00022 denotes ABA
T157 950-953 http://purl.obolibrary.org/obo/CHEBI_53554 denotes ABA
T158 950-953 ASR3 denotes ABA
T159 960-964 http://id.nlm.nih.gov/mesh/D012275 denotes rice
T160 960-964 http://purl.bioontology.org/ontology/RXNORM/1311040 denotes rice
T161 960-964 http://www.ncbi.nlm.nih.gov/taxonomy/4530 denotes rice
T162 965-969 http://purl.obolibrary.org/obo/SO_0000704 denotes gene
T163 970-973 http://purl.obolibrary.org/obo/PR_Q9NZC7 denotes for
T164 970-973 http://purl.obolibrary.org/obo/PR_000001036 denotes for
T165 974-990 http://www.uniprot.org/uniprot/P86516 denotes carboxypeptidase
T166 1006-1016 http://purl.obolibrary.org/obo/CHEBI_16898 denotes pyrimidine
T167 1006-1016 http://id.nlm.nih.gov/mesh/C030986 denotes pyrimidine
T168 1006-1016 http://id.nlm.nih.gov/mesh/C030986 denotes pyrimidine
T169 1045-1063 http://purl.obolibrary.org/obo/SO_0001416 denotes 5' flanking region
T170 1048-1063 http://purl.obolibrary.org/obo/SO_0000239 denotes flanking region
T171 1057-1063 http://purl.obolibrary.org/obo/SO_0000839 denotes region
T172 1057-1063 http://purl.obolibrary.org/obo/SO_0000001 denotes region
T173 1071-1074 http://purl.obolibrary.org/obo/SO_0001180 denotes are
T174 1071-1074 http://purl.obolibrary.org/obo/SO_0001853 denotes are
T175 1111-1115 http://purl.obolibrary.org/obo/SO_0000704 denotes gene

OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 935-948 http://identifiers.org/oryzabase.gene/8408 denotes abscisic acid
T2 950-953 http://identifiers.org/oryzabase.gene/6003 denotes ABA
T3 950-953 http://identifiers.org/oryzabase.gene/8408 denotes ABA
T92532 935-948 http://identifiers.org/ricegap/LOC_Os11g06720 denotes abscisic acid
T98508 950-953 http://identifiers.org/ricegap/LOC_Os11g06720 denotes ABA
T92054 950-953 http://identifiers.org/ricegap/LOC_Os04g34600 denotes ABA
T4 950-953 http://identifiers.org/ricegap/LOC_Os02g33820 denotes ABA
T5 950-953 http://identifiers.org/ricegap/LOC_Os01g73250 denotes ABA
T6 950-953 http://identifiers.org/ricegap/LOC_Os01g72910 denotes ABA
T7 950-953 http://identifiers.org/ricegap/LOC_Os01g72900 denotes ABA
T59579 935-948 http://identifiers.org/rapdb.locus/Os11g0167800 denotes abscisic acid
T97059 950-953 http://identifiers.org/rapdb.locus/Os11g0167800 denotes ABA
T25405 950-953 http://identifiers.org/rapdb.locus/Os04g0423400 denotes ABA
T58647 950-953 http://identifiers.org/rapdb.locus/Os02g0543000 denotes ABA
T53748 950-953 http://identifiers.org/rapdb.locus/Os01g0963600 denotes ABA
T60110 950-953 http://identifiers.org/rapdb.locus/Os01g0959200 denotes ABA
T28223 950-953 http://identifiers.org/rapdb.locus/Os01g0959100 denotes ABA
T61688 935-948 http://identifiers.org/uniprot/Q53JF7 denotes abscisic acid
T35522 950-953 http://identifiers.org/uniprot/Q53JF7 denotes ABA
M_0 440-473 hunflair:NA:Gene denotes type III serine carboxypeptidases
M_1 490-495 hunflair:NA:Species denotes wheat
M_2 598-603 hunflair:NA:Species denotes wheat
M_3 449-455 hunflair:NA:Chemical denotes serine
M_4 950-953 hunflair:NA:Chemical denotes ABA
M_5 527-537 hunflair:NA:Chemical denotes amino acid
M_6 935-948 hunflair:NA:Chemical denotes abscisic acid
M_7 102-123 hunflair:NA:Gene denotes carboxypeptidase gene
M_8 51-55 hunflair:NA:Species denotes rice
M_9 129-133 hunflair:NA:Species denotes rice
M_10 406-410 hunflair:NA:Species denotes rice
M_11 672-676 hunflair:NA:Species denotes rice
M_12 960-964 hunflair:NA:Species denotes rice
M_13 479-485 hunflair:NA:Species denotes barley
M_14 587-593 hunflair:NA:Species denotes barley
M_15 867-883 hunflair:NA:Chemical denotes gibberellic acid
M_16 80-96 hunflair:NA:Gene denotes carboxypeptidase
M_17 102-118 hunflair:NA:Gene denotes carboxypeptidase
M_18 384-400 hunflair:NA:Gene denotes carboxypeptidase
M_19 677-693 hunflair:NA:Gene denotes carboxypeptidase
M_20 974-990 hunflair:NA:Gene denotes carboxypeptidase
M_21 456-473 hunflair:NA:Gene denotes carboxypeptidases
M_22 564-581 hunflair:NA:Gene denotes carboxypeptidases

OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 950-953 http://identifiers.org/oryzabase.gene/6003 denotes ABA

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 440-473 hunflair:NA:Gene denotes type III serine carboxypeptidases
M_1 490-495 hunflair:NA:Species denotes wheat
M_2 598-603 hunflair:NA:Species denotes wheat
M_3 449-455 hunflair:NA:Chemical denotes serine
M_4 950-953 hunflair:NA:Chemical denotes ABA
M_5 527-537 hunflair:NA:Chemical denotes amino acid
M_6 935-948 hunflair:NA:Chemical denotes abscisic acid
M_7 102-123 hunflair:NA:Gene denotes carboxypeptidase gene
M_8 51-55 hunflair:NA:Species denotes rice
M_9 129-133 hunflair:NA:Species denotes rice
M_10 406-410 hunflair:NA:Species denotes rice
M_11 672-676 hunflair:NA:Species denotes rice
M_12 960-964 hunflair:NA:Species denotes rice
M_13 479-485 hunflair:NA:Species denotes barley
M_14 587-593 hunflair:NA:Species denotes barley
M_15 867-883 hunflair:NA:Chemical denotes gibberellic acid
M_16 80-96 hunflair:NA:Gene denotes carboxypeptidase
M_17 102-118 hunflair:NA:Gene denotes carboxypeptidase
M_18 384-400 hunflair:NA:Gene denotes carboxypeptidase
M_19 677-693 hunflair:NA:Gene denotes carboxypeptidase
M_20 974-990 hunflair:NA:Gene denotes carboxypeptidase
M_21 456-473 hunflair:NA:Gene denotes carboxypeptidases
M_22 564-581 hunflair:NA:Gene denotes carboxypeptidases

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-97 Sentence denotes Structure and expression during the germination of rice seeds of the gene for a carboxypeptidase.
T2 98-178 Sentence denotes The carboxypeptidase gene from rice and corresponding cDNA clones were isolated.
T3 179-353 Sentence denotes The Sal I 11.2 kb fragment of DNA cloned from a size-fractionated genome library contained eight introns and an open reading frame that encoded 500 amino acids (M(r) 55,445).
T4 354-496 Sentence denotes The structure deduced for the carboxypeptidase from rice was very similar to those of type III serine carboxypeptidases from barley and wheat.
T5 497-638 Sentence denotes The extent of homology of the amino acid sequence to that of these carboxypeptidases from barley and wheat was 92.3% and 87.2%, respectively.
T6 639-810 Sentence denotes The accumulation of mRNA for the rice carboxypeptidase was conspicuous in germinating endosperms that contained aleurone layers, but levels were lower in leaves and roots.
T7 811-955 Sentence denotes The abundance of the mRNA in endosperms was enhanced by gibberellic acid (GA) and accumulation of the mRNA was inhibited by abscisic acid (ABA).
T8 956-1116 Sentence denotes The rice gene for carboxypeptidase contained some pyrimidine boxes (C/TCTTTTC/T), in the 5' flanking region, which are a characteristic of a GA-responsive gene.