PubMed:16220344 JSONTXT

Annnotations TAB JSON ListView MergeView

    Oryza-OGER

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and characterization of a novel splicing isoform of the iron-superoxide dismutase gene in rice (Oryza sativa L.).\nSuperoxide dismutases (SODs) are ubiquitous metalloenzymes in aerobic organisms that play a crucial role in protecting organisms against ROS. Here, we report the molecular cloning and functional characterization of a novel alternatively spliced variant of the iron-superoxide dismutase gene, OsFe-SODb, from a rice panicle cDNA library. The alternative splicing event occurred in the fourth exon of the OsFe-SOD gene, and led to the translation of two isoforms of different sizes. The 5' flanking region of the OsFe-SOD was cloned and many cis-acting regulatory elements were found that are involved in light responsiveness, including a G-box and an I-box. RT-PCR analysis showed that the two alternative forms of OsFe-SOD were expressed in both the vegetative and reproductive tissues of Cpslo17. Moreover, accumulation of both isoforms was upregulated by light induction. In addition, the alternative splicing of OsFe-SOD mRNA was sensitive to low temperature. High yield production of the two recombinant OsFe-SOD isoforms was achieved in Escherichia coli. SOD assays showed that C-terminal truncation in OsFe-SODb did not result in a loss of SOD enzyme activity."}

    OryzaGP_2021

    {"project":"OryzaGP_2021","denotations":[{"id":"T1","span":{"begin":64,"end":89},"obj":"http://identifiers.org/oryzabase.gene/9278"},{"id":"T2","span":{"begin":382,"end":407},"obj":"http://identifiers.org/oryzabase.gene/9278"},{"id":"T3","span":{"begin":414,"end":423},"obj":"http://identifiers.org/oryzabase.gene/9278"},{"id":"T4","span":{"begin":525,"end":533},"obj":"http://identifiers.org/oryzabase.gene/9278"},{"id":"T5","span":{"begin":633,"end":641},"obj":"http://identifiers.org/oryzabase.gene/9278"},{"id":"T6","span":{"begin":779,"end":781},"obj":"http://identifiers.org/oryzabase.gene/319"},{"id":"T7","span":{"begin":836,"end":844},"obj":"http://identifiers.org/oryzabase.gene/9278"},{"id":"T8","span":{"begin":1037,"end":1045},"obj":"http://identifiers.org/oryzabase.gene/9278"},{"id":"T9","span":{"begin":1130,"end":1138},"obj":"http://identifiers.org/oryzabase.gene/9278"},{"id":"T10","span":{"begin":1182,"end":1185},"obj":"http://identifiers.org/oryzabase.gene/540"},{"id":"T11","span":{"begin":1182,"end":1185},"obj":"http://identifiers.org/oryzabase.gene/20934"},{"id":"T12","span":{"begin":1230,"end":1239},"obj":"http://identifiers.org/oryzabase.gene/9278"},{"id":"T13","span":{"begin":1268,"end":1271},"obj":"http://identifiers.org/oryzabase.gene/540"},{"id":"T14","span":{"begin":1268,"end":1271},"obj":"http://identifiers.org/oryzabase.gene/20934"},{"id":"T65739","span":{"begin":64,"end":89},"obj":"http://identifiers.org/ricegap/LOC_Os06g05110"},{"id":"T1914","span":{"begin":122,"end":143},"obj":"http://identifiers.org/ricegap/LOC_Os04g48410"},{"id":"T15756","span":{"begin":145,"end":149},"obj":"http://identifiers.org/ricegap/LOC_Os04g48410"},{"id":"T2189","span":{"begin":382,"end":407},"obj":"http://identifiers.org/ricegap/LOC_Os06g05110"},{"id":"T4665","span":{"begin":414,"end":423},"obj":"http://identifiers.org/ricegap/LOC_Os06g05110"},{"id":"T94859","span":{"begin":525,"end":533},"obj":"http://identifiers.org/ricegap/LOC_Os06g05110"},{"id":"T16361","span":{"begin":633,"end":641},"obj":"http://identifiers.org/ricegap/LOC_Os06g05110"},{"id":"T3053","span":{"begin":836,"end":844},"obj":"http://identifiers.org/ricegap/LOC_Os06g05110"},{"id":"T48945","span":{"begin":1037,"end":1045},"obj":"http://identifiers.org/ricegap/LOC_Os06g05110"},{"id":"T19380","span":{"begin":1130,"end":1138},"obj":"http://identifiers.org/ricegap/LOC_Os06g05110"},{"id":"T21550","span":{"begin":1182,"end":1185},"obj":"http://identifiers.org/ricegap/LOC_Os04g48410"},{"id":"T18357","span":{"begin":1230,"end":1239},"obj":"http://identifiers.org/ricegap/LOC_Os06g05110"},{"id":"T70535","span":{"begin":1268,"end":1271},"obj":"http://identifiers.org/ricegap/LOC_Os04g48410"},{"id":"T57547","span":{"begin":64,"end":89},"obj":"http://identifiers.org/rapdb.locus/Os06g0143000"},{"id":"T16431","span":{"begin":122,"end":143},"obj":"http://identifiers.org/rapdb.locus/Os04g0573200"},{"id":"T27448","span":{"begin":145,"end":149},"obj":"http://identifiers.org/rapdb.locus/Os04g0573200"},{"id":"T90099","span":{"begin":382,"end":407},"obj":"http://identifiers.org/rapdb.locus/Os06g0143000"},{"id":"T80680","span":{"begin":414,"end":423},"obj":"http://identifiers.org/rapdb.locus/Os06g0143000"},{"id":"T2965","span":{"begin":525,"end":533},"obj":"http://identifiers.org/rapdb.locus/Os06g0143000"},{"id":"T9315","span":{"begin":633,"end":641},"obj":"http://identifiers.org/rapdb.locus/Os06g0143000"},{"id":"T66536","span":{"begin":836,"end":844},"obj":"http://identifiers.org/rapdb.locus/Os06g0143000"},{"id":"T73110","span":{"begin":1037,"end":1045},"obj":"http://identifiers.org/rapdb.locus/Os06g0143000"},{"id":"T82438","span":{"begin":1130,"end":1138},"obj":"http://identifiers.org/rapdb.locus/Os06g0143000"},{"id":"T68393","span":{"begin":1182,"end":1185},"obj":"http://identifiers.org/rapdb.locus/Os04g0573200"},{"id":"T10143","span":{"begin":1230,"end":1239},"obj":"http://identifiers.org/rapdb.locus/Os06g0143000"},{"id":"T34947","span":{"begin":1268,"end":1271},"obj":"http://identifiers.org/rapdb.locus/Os04g0573200"},{"id":"T92961","span":{"begin":64,"end":89},"obj":"http://identifiers.org/uniprot/B8B2C9"},{"id":"T69677","span":{"begin":382,"end":407},"obj":"http://identifiers.org/uniprot/B8B2C9"},{"id":"T30520","span":{"begin":414,"end":423},"obj":"http://identifiers.org/uniprot/B8B2C9"},{"id":"T49667","span":{"begin":525,"end":533},"obj":"http://identifiers.org/uniprot/B8B2C9"},{"id":"T87451","span":{"begin":633,"end":641},"obj":"http://identifiers.org/uniprot/B8B2C9"},{"id":"T49563","span":{"begin":836,"end":844},"obj":"http://identifiers.org/uniprot/B8B2C9"},{"id":"T16706","span":{"begin":1037,"end":1045},"obj":"http://identifiers.org/uniprot/B8B2C9"},{"id":"T27641","span":{"begin":1130,"end":1138},"obj":"http://identifiers.org/uniprot/B8B2C9"},{"id":"T6684","span":{"begin":1182,"end":1185},"obj":"http://identifiers.org/uniprot/Q7XTY9"},{"id":"T42541","span":{"begin":1182,"end":1185},"obj":"http://identifiers.org/uniprot/Q01JW6"},{"id":"T2126","span":{"begin":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and characterization of a novel splicing isoform of the iron-superoxide dismutase gene in rice (Oryza sativa L.).\nSuperoxide dismutases (SODs) are ubiquitous metalloenzymes in aerobic organisms that play a crucial role in protecting organisms against ROS. Here, we report the molecular cloning and functional characterization of a novel alternatively spliced variant of the iron-superoxide dismutase gene, OsFe-SODb, from a rice panicle cDNA library. The alternative splicing event occurred in the fourth exon of the OsFe-SOD gene, and led to the translation of two isoforms of different sizes. The 5' flanking region of the OsFe-SOD was cloned and many cis-acting regulatory elements were found that are involved in light responsiveness, including a G-box and an I-box. RT-PCR analysis showed that the two alternative forms of OsFe-SOD were expressed in both the vegetative and reproductive tissues of Cpslo17. Moreover, accumulation of both isoforms was upregulated by light induction. In addition, the alternative splicing of OsFe-SOD mRNA was sensitive to low temperature. High yield production of the two recombinant OsFe-SOD isoforms was achieved in Escherichia coli. SOD assays showed that C-terminal truncation in OsFe-SODb did not result in a loss of SOD enzyme activity."}

    OryzaGP_2022

    {"project":"OryzaGP_2022","denotations":[{"id":"T1","span":{"begin":69,"end":89},"obj":"http://identifiers.org/oryzabase.gene/540"},{"id":"T2","span":{"begin":69,"end":89},"obj":"http://identifiers.org/oryzabase.gene/20934"},{"id":"T3","span":{"begin":387,"end":407},"obj":"http://identifiers.org/oryzabase.gene/540"},{"id":"T4","span":{"begin":387,"end":407},"obj":"http://identifiers.org/oryzabase.gene/20934"}],"text":"Cloning and characterization of a novel splicing isoform of the iron-superoxide dismutase gene in rice (Oryza sativa L.).\nSuperoxide dismutases (SODs) are ubiquitous metalloenzymes in aerobic organisms that play a crucial role in protecting organisms against ROS. Here, we report the molecular cloning and functional characterization of a novel alternatively spliced variant of the iron-superoxide dismutase gene, OsFe-SODb, from a rice panicle cDNA library. The alternative splicing event occurred in the fourth exon of the OsFe-SOD gene, and led to the translation of two isoforms of different sizes. The 5' flanking region of the OsFe-SOD was cloned and many cis-acting regulatory elements were found that are involved in light responsiveness, including a G-box and an I-box. RT-PCR analysis showed that the two alternative forms of OsFe-SOD were expressed in both the vegetative and reproductive tissues of Cpslo17. Moreover, accumulation of both isoforms was upregulated by light induction. In addition, the alternative splicing of OsFe-SOD mRNA was sensitive to low temperature. High yield production of the two recombinant OsFe-SOD isoforms was achieved in Escherichia coli. SOD assays showed that C-terminal truncation in OsFe-SODb did not result in a loss of SOD enzyme activity."}

    OryzaGP_2021_v2

    {"project":"OryzaGP_2021_v2","denotations":[{"id":"T1","span":{"begin":414,"end":423},"obj":"http://identifiers.org/oryzabase.gene/9278"},{"id":"T2","span":{"begin":525,"end":533},"obj":"http://identifiers.org/oryzabase.gene/9278"},{"id":"T3","span":{"begin":633,"end":641},"obj":"http://identifiers.org/oryzabase.gene/9278"},{"id":"T4","span":{"begin":779,"end":781},"obj":"http://identifiers.org/oryzabase.gene/319"},{"id":"T5","span":{"begin":836,"end":844},"obj":"http://identifiers.org/oryzabase.gene/9278"},{"id":"T6","span":{"begin":1037,"end":1045},"obj":"http://identifiers.org/oryzabase.gene/9278"},{"id":"T7","span":{"begin":1130,"end":1138},"obj":"http://identifiers.org/oryzabase.gene/9278"},{"id":"T8","span":{"begin":1182,"end":1185},"obj":"http://identifiers.org/oryzabase.gene/540"},{"id":"T9","span":{"begin":1182,"end":1185},"obj":"http://identifiers.org/oryzabase.gene/20934"},{"id":"T10","span":{"begin":1230,"end":1239},"obj":"http://identifiers.org/oryzabase.gene/9278"},{"id":"T11","span":{"begin":1268,"end":1271},"obj":"http://identifiers.org/oryzabase.gene/540"},{"id":"T12","span":{"begin":1268,"end":1271},"obj":"http://identifiers.org/oryzabase.gene/20934"},{"id":"T87542","span":{"begin":414,"end":423},"obj":"http://identifiers.org/rapdb.locus/Os06g0143000"},{"id":"T4870","span":{"begin":525,"end":533},"obj":"http://identifiers.org/rapdb.locus/Os06g0143000"},{"id":"T10172","span":{"begin":633,"end":641},"obj":"http://identifiers.org/rapdb.locus/Os06g0143000"},{"id":"T73282","span":{"begin":836,"end":844},"obj":"http://identifiers.org/rapdb.locus/Os06g0143000"},{"id":"T94962","span":{"begin":1037,"end":1045},"obj":"http://identifiers.org/rapdb.locus/Os06g0143000"},{"id":"T36065","span":{"begin":1130,"end":1138},"obj":"http://identifiers.org/rapdb.locus/Os06g0143000"},{"id":"T39455","span":{"begin":1182,"end":1185},"obj":"http://identifiers.org/rapdb.locus/Os04g0573200"},{"id":"T23737","span":{"begin":1230,"end":1239},"obj":"http://identifiers.org/rapdb.locus/Os06g0143000"},{"id":"T57713","span":{"begin":1268,"end":1271},"obj":"http://identifiers.org/rapdb.locus/Os04g0573200"}],"text":"Cloning and characterization of a novel splicing isoform of the iron-superoxide dismutase gene in rice (Oryza sativa L.).\nSuperoxide dismutases (SODs) are ubiquitous metalloenzymes in aerobic organisms that play a crucial role in protecting organisms against ROS. Here, we report the molecular cloning and functional characterization of a novel alternatively spliced variant of the iron-superoxide dismutase gene, OsFe-SODb, from a rice panicle cDNA library. The alternative splicing event occurred in the fourth exon of the OsFe-SOD gene, and led to the translation of two isoforms of different sizes. The 5' flanking region of the OsFe-SOD was cloned and many cis-acting regulatory elements were found that are involved in light responsiveness, including a G-box and an I-box. RT-PCR analysis showed that the two alternative forms of OsFe-SOD were expressed in both the vegetative and reproductive tissues of Cpslo17. Moreover, accumulation of both isoforms was upregulated by light induction. In addition, the alternative splicing of OsFe-SOD mRNA was sensitive to low temperature. High yield production of the two recombinant OsFe-SOD isoforms was achieved in Escherichia coli. SOD assays showed that C-terminal truncation in OsFe-SODb did not result in a loss of SOD enzyme activity."}

    OryzaGP_2021_FLAIR

    {"project":"OryzaGP_2021_FLAIR","denotations":[{"id":"M_0","span":{"begin":145,"end":149},"obj":"hunflair:NA:Gene"},{"id":"M_1","span":{"begin":525,"end":533},"obj":"hunflair:NA:Gene"},{"id":"M_2","span":{"begin":633,"end":641},"obj":"hunflair:NA:Gene"},{"id":"M_3","span":{"begin":836,"end":844},"obj":"hunflair:NA:Gene"},{"id":"M_4","span":{"begin":1037,"end":1045},"obj":"hunflair:NA:Gene"},{"id":"M_5","span":{"begin":1130,"end":1138},"obj":"hunflair:NA:Gene"},{"id":"M_6","span":{"begin":525,"end":538},"obj":"hunflair:NA:Gene"},{"id":"M_7","span":{"begin":104,"end":116},"obj":"hunflair:NA:Species"},{"id":"M_8","span":{"begin":530,"end":533},"obj":"hunflair:NA:Gene"},{"id":"M_9","span":{"begin":638,"end":641},"obj":"hunflair:NA:Gene"},{"id":"M_10","span":{"begin":841,"end":844},"obj":"hunflair:NA:Gene"},{"id":"M_11","span":{"begin":1042,"end":1045},"obj":"hunflair:NA:Gene"},{"id":"M_12","span":{"begin":1135,"end":1138},"obj":"hunflair:NA:Gene"},{"id":"M_13","span":{"begin":1182,"end":1185},"obj":"hunflair:NA:Gene"},{"id":"M_14","span":{"begin":1268,"end":1271},"obj":"hunflair:NA:Gene"},{"id":"M_15","span":{"begin":122,"end":143},"obj":"hunflair:NA:Gene"},{"id":"M_16","span":{"begin":98,"end":102},"obj":"hunflair:NA:Species"},{"id":"M_17","span":{"begin":432,"end":436},"obj":"hunflair:NA:Species"},{"id":"M_18","span":{"begin":64,"end":89},"obj":"hunflair:NA:Gene"},{"id":"M_19","span":{"begin":382,"end":407},"obj":"hunflair:NA:Gene"},{"id":"M_20","span":{"begin":69,"end":79},"obj":"hunflair:NA:Chemical"},{"id":"M_21","span":{"begin":387,"end":397},"obj":"hunflair:NA:Chemical"},{"id":"M_22","span":{"begin":64,"end":68},"obj":"hunflair:NA:Chemical"},{"id":"M_23","span":{"begin":382,"end":386},"obj":"hunflair:NA:Chemical"},{"id":"M_24","span":{"begin":414,"end":418},"obj":"hunflair:NA:Gene"},{"id":"M_25","span":{"begin":525,"end":529},"obj":"hunflair:NA:Gene"},{"id":"M_26","span":{"begin":633,"end":637},"obj":"hunflair:NA:Gene"},{"id":"M_27","span":{"begin":836,"end":840},"obj":"hunflair:NA:Gene"},{"id":"M_28","span":{"begin":1037,"end":1041},"obj":"hunflair:NA:Gene"},{"id":"M_29","span":{"begin":1130,"end":1134},"obj":"hunflair:NA:Gene"},{"id":"M_30","span":{"begin":1230,"end":1234},"obj":"hunflair:NA:Gene"},{"id":"M_31","span":{"begin":1164,"end":1180},"obj":"hunflair:NA:Species"},{"id":"M_32","span":{"begin":414,"end":423},"obj":"hunflair:NA:Gene"},{"id":"M_33","span":{"begin":1230,"end":1239},"obj":"hunflair:NA:Gene"},{"id":"M_34","span":{"begin":122,"end":132},"obj":"hunflair:NA:Chemical"}],"text":"Cloning and characterization of a novel splicing isoform of the iron-superoxide dismutase gene in rice (Oryza sativa L.).\nSuperoxide dismutases (SODs) are ubiquitous metalloenzymes in aerobic organisms that play a crucial role in protecting organisms against ROS. Here, we report the molecular cloning and functional characterization of a novel alternatively spliced variant of the iron-superoxide dismutase gene, OsFe-SODb, from a rice panicle cDNA library. The alternative splicing event occurred in the fourth exon of the OsFe-SOD gene, and led to the translation of two isoforms of different sizes. The 5' flanking region of the OsFe-SOD was cloned and many cis-acting regulatory elements were found that are involved in light responsiveness, including a G-box and an I-box. RT-PCR analysis showed that the two alternative forms of OsFe-SOD were expressed in both the vegetative and reproductive tissues of Cpslo17. Moreover, accumulation of both isoforms was upregulated by light induction. In addition, the alternative splicing of OsFe-SOD mRNA was sensitive to low temperature. High yield production of the two recombinant OsFe-SOD isoforms was achieved in Escherichia coli. SOD assays showed that C-terminal truncation in OsFe-SODb did not result in a loss of SOD enzyme activity."}

    Oryza_sentences

    {"project":"Oryza_sentences","blocks":[{"id":"T1","span":{"begin":0,"end":121},"obj":"Sentence"},{"id":"T2","span":{"begin":122,"end":263},"obj":"Sentence"},{"id":"T3","span":{"begin":264,"end":458},"obj":"Sentence"},{"id":"T4","span":{"begin":459,"end":602},"obj":"Sentence"},{"id":"T5","span":{"begin":603,"end":778},"obj":"Sentence"},{"id":"T6","span":{"begin":779,"end":919},"obj":"Sentence"},{"id":"T7","span":{"begin":920,"end":995},"obj":"Sentence"},{"id":"T8","span":{"begin":996,"end":1084},"obj":"Sentence"},{"id":"T9","span":{"begin":1085,"end":1181},"obj":"Sentence"},{"id":"T10","span":{"begin":1182,"end":1288},"obj":"Sentence"}],"text":"Cloning and characterization of a novel splicing isoform of the iron-superoxide dismutase gene in rice (Oryza sativa L.).\nSuperoxide dismutases (SODs) are ubiquitous metalloenzymes in aerobic organisms that play a crucial role in protecting organisms against ROS. Here, we report the molecular cloning and functional characterization of a novel alternatively spliced variant of the iron-superoxide dismutase gene, OsFe-SODb, from a rice panicle cDNA library. The alternative splicing event occurred in the fourth exon of the OsFe-SOD gene, and led to the translation of two isoforms of different sizes. The 5' flanking region of the OsFe-SOD was cloned and many cis-acting regulatory elements were found that are involved in light responsiveness, including a G-box and an I-box. RT-PCR analysis showed that the two alternative forms of OsFe-SOD were expressed in both the vegetative and reproductive tissues of Cpslo17. Moreover, accumulation of both isoforms was upregulated by light induction. In addition, the alternative splicing of OsFe-SOD mRNA was sensitive to low temperature. High yield production of the two recombinant OsFe-SOD isoforms was achieved in Escherichia coli. SOD assays showed that C-terminal truncation in OsFe-SODb did not result in a loss of SOD enzyme activity."}