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PubMed:16037490 JSONTXT

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Glycan-Motif

Id Subject Object Predicate Lexical cue
T1 1199-1206 https://glytoucan.org/Structures/Glycans/G00021MO denotes heparin
T2 1199-1206 https://glytoucan.org/Structures/Glycans/G54161DR denotes heparin

GlyCosmos6-Glycan-Motif-Image

Id Subject Object Predicate Lexical cue image
T1 1199-1206 Glycan_Motif denotes heparin https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G54161DR|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00021MO

GlyCosmos6-Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T1 1199-1206 https://glytoucan.org/Structures/Glycans/G00021MO denotes heparin
T2 1199-1206 https://glytoucan.org/Structures/Glycans/G54161DR denotes heparin

uniprot-human

Id Subject Object Predicate Lexical cue
T1 70-82 http://www.uniprot.org/uniprot/Q8IVI8 denotes fibronectins
T2 829-841 http://www.uniprot.org/uniprot/Q8IVI8 denotes fibronectins
T3 1001-1003 http://www.uniprot.org/uniprot/Q8IVI8 denotes FN
T4 1444-1446 http://www.uniprot.org/uniprot/Q8IVI8 denotes FN
T5 1564-1566 http://www.uniprot.org/uniprot/Q8IVI8 denotes FN
T6 1632-1646 http://www.uniprot.org/uniprot/P08519 denotes apolipoprotein

uniprot-mouse

Id Subject Object Predicate Lexical cue
T1 70-82 http://www.uniprot.org/uniprot/P11276 denotes fibronectins
T2 829-841 http://www.uniprot.org/uniprot/P11276 denotes fibronectins
T3 1001-1003 http://www.uniprot.org/uniprot/P11276 denotes FN
T4 1444-1446 http://www.uniprot.org/uniprot/P11276 denotes FN
T5 1564-1566 http://www.uniprot.org/uniprot/P11276 denotes FN

GlycoBiology-NCBITAXON

Id Subject Object Predicate Lexical cue
T1 101-112 http://purl.bioontology.org/ontology/NCBITAXON/415099 denotes hydrophilic
T2 101-112 http://purl.bioontology.org/ontology/NCBITAXON/8683 denotes hydrophilic
T3 480-488 http://purl.bioontology.org/ontology/NCBITAXON/433098 denotes divalent
T4 747-762 http://purl.bioontology.org/ontology/NCBITAXON/1113441 denotes heterogeneities
T5 747-762 http://purl.bioontology.org/ontology/NCBITAXON/691256 denotes heterogeneities

GO-BP

Id Subject Object Predicate Lexical cue
T1 61-69 http://purl.obolibrary.org/obo/GO_0007349 denotes cellular
T2 820-828 http://purl.obolibrary.org/obo/GO_0007349 denotes cellular
T3 992-1000 http://purl.obolibrary.org/obo/GO_0007349 denotes cellular
T4 774-787 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T5 1105-1118 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T6 1358-1371 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T7 1427-1440 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T8 900-912 http://purl.obolibrary.org/obo/GO_0036065 denotes fucosylation
T9 976-988 http://purl.obolibrary.org/obo/GO_0036065 denotes fucosylation
T10 1167-1174 http://purl.obolibrary.org/obo/GO_0035282 denotes segment
T11 1412-1419 http://purl.obolibrary.org/obo/GO_0035282 denotes segment
T12 1632-1646 http://purl.obolibrary.org/obo/GO_0005319 denotes apolipoprotein

GO-MF

Id Subject Object Predicate Lexical cue
T1 538-545 http://purl.obolibrary.org/obo/GO_0070026 denotes binding
T2 1207-1214 http://purl.obolibrary.org/obo/GO_0070026 denotes binding
T3 1239-1246 http://purl.obolibrary.org/obo/GO_0070026 denotes binding
T4 538-545 http://purl.obolibrary.org/obo/GO_0003680 denotes binding
T5 1207-1214 http://purl.obolibrary.org/obo/GO_0003680 denotes binding
T6 1239-1246 http://purl.obolibrary.org/obo/GO_0003680 denotes binding
T7 538-545 http://purl.obolibrary.org/obo/GO_0017091 denotes binding
T8 1207-1214 http://purl.obolibrary.org/obo/GO_0017091 denotes binding
T9 1239-1246 http://purl.obolibrary.org/obo/GO_0017091 denotes binding
T10 538-545 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T11 1207-1214 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T12 1239-1246 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T13 1199-1214 http://purl.obolibrary.org/obo/GO_0008201 denotes heparin-binding
T14 1230-1246 http://purl.obolibrary.org/obo/GO_0005518 denotes collagen-binding

UBERON-AE

Id Subject Object Predicate Lexical cue
T1 278-285 http://purl.obolibrary.org/obo/UBERON_0000062 denotes organic
T2 515-522 http://purl.obolibrary.org/obo/UBERON_0000062 denotes organic

bionlp-st-epi-2011-training

Id Subject Object Predicate Lexical cue
T1 70-82 Protein denotes fibronectins
T2 829-841 Protein denotes fibronectins
T3 843-846 Protein denotes FNs
T4 1001-1003 Protein denotes FN
T5 1301-1311 Protein denotes agglutinin
T6 1444-1446 Protein denotes FN
T7 1564-1566 Protein denotes FN
T8 1632-1652 Protein denotes apolipoprotein B-100
T9 1654-1661 Protein denotes apoB100

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-157 Sentence denotes Differential analysis of site-specific glycans on plasma and cellular fibronectins: application of a hydrophilic affinity method for glycopeptide enrichment.
TextSentencer_T2 158-412 Sentence denotes Isolation of glycopeptides utilizing hydrogen bonding between glycopeptide glycans and a carbohydrate-gel matrix in the organic phase is useful for site-specific characterization of oligosaccharides of glycoproteins, when combined with mass spectrometry.
TextSentencer_T3 413-692 Sentence denotes In this study, recovery of glycopeptides was improved by including divalent cations or increasing the organic solvent in the binding solution, without losing specificity, whereas it was still less effective for those with a long peptide backbone exceeding 50 amino acid residues.
TextSentencer_T4 693-848 Sentence denotes The method was then applied to the analysis of glycan heterogeneities at seven N-glycosylation sites in each of the plasma and cellular fibronectins (FNs).
TextSentencer_T5 849-1083 Sentence denotes There was a remarkable site-specific difference in fucosylation between these isoforms; Asn1244 selectively escaped the global fucosylation of cellular FN, whereas only Asn1007 and Asn2108 of the plasma isoform underwent modification.
TextSentencer_T6 1084-1319 Sentence denotes In addition, a new O-glycosylation site was identified at Thr279 in the connecting segment between the fibrin- and heparin-binding domain and the collagen-binding domain, and the glycopeptide was reactive to a peanut agglutinin lectin.
TextSentencer_T7 1320-1592 Sentence denotes Considering that another mucin-type O-glycosylation site lies within a different connecting segment, the O-glycosylation of FN was suggested to play a significant role in segregating the neighboring domains and thus maintaining the topology of FN and the domain functions.
TextSentencer_T8 1593-1775 Sentence denotes In addition, the method was applied to apolipoprotein B-100 (apoB100) whose N-glycan structures at 17 of 19 potential sites have been reported, and characterized the remaining sites.
TextSentencer_T9 1776-1922 Sentence denotes The results also demonstrated that the enriched glycopeptide provides resources for site-specific analysis of oligosaccharides in glycoproteomics.
T1 0-157 Sentence denotes Differential analysis of site-specific glycans on plasma and cellular fibronectins: application of a hydrophilic affinity method for glycopeptide enrichment.
T2 158-412 Sentence denotes Isolation of glycopeptides utilizing hydrogen bonding between glycopeptide glycans and a carbohydrate-gel matrix in the organic phase is useful for site-specific characterization of oligosaccharides of glycoproteins, when combined with mass spectrometry.
T3 413-692 Sentence denotes In this study, recovery of glycopeptides was improved by including divalent cations or increasing the organic solvent in the binding solution, without losing specificity, whereas it was still less effective for those with a long peptide backbone exceeding 50 amino acid residues.
T4 693-848 Sentence denotes The method was then applied to the analysis of glycan heterogeneities at seven N-glycosylation sites in each of the plasma and cellular fibronectins (FNs).
T5 849-1083 Sentence denotes There was a remarkable site-specific difference in fucosylation between these isoforms; Asn1244 selectively escaped the global fucosylation of cellular FN, whereas only Asn1007 and Asn2108 of the plasma isoform underwent modification.
T6 1084-1319 Sentence denotes In addition, a new O-glycosylation site was identified at Thr279 in the connecting segment between the fibrin- and heparin-binding domain and the collagen-binding domain, and the glycopeptide was reactive to a peanut agglutinin lectin.
T7 1320-1592 Sentence denotes Considering that another mucin-type O-glycosylation site lies within a different connecting segment, the O-glycosylation of FN was suggested to play a significant role in segregating the neighboring domains and thus maintaining the topology of FN and the domain functions.
T8 1593-1775 Sentence denotes In addition, the method was applied to apolipoprotein B-100 (apoB100) whose N-glycan structures at 17 of 19 potential sites have been reported, and characterized the remaining sites.
T9 1776-1922 Sentence denotes The results also demonstrated that the enriched glycopeptide provides resources for site-specific analysis of oligosaccharides in glycoproteomics.
T1 0-157 Sentence denotes Differential analysis of site-specific glycans on plasma and cellular fibronectins: application of a hydrophilic affinity method for glycopeptide enrichment.
T2 158-412 Sentence denotes Isolation of glycopeptides utilizing hydrogen bonding between glycopeptide glycans and a carbohydrate-gel matrix in the organic phase is useful for site-specific characterization of oligosaccharides of glycoproteins, when combined with mass spectrometry.
T3 413-692 Sentence denotes In this study, recovery of glycopeptides was improved by including divalent cations or increasing the organic solvent in the binding solution, without losing specificity, whereas it was still less effective for those with a long peptide backbone exceeding 50 amino acid residues.
T4 693-848 Sentence denotes The method was then applied to the analysis of glycan heterogeneities at seven N-glycosylation sites in each of the plasma and cellular fibronectins (FNs).
T5 849-1083 Sentence denotes There was a remarkable site-specific difference in fucosylation between these isoforms; Asn1244 selectively escaped the global fucosylation of cellular FN, whereas only Asn1007 and Asn2108 of the plasma isoform underwent modification.
T6 1084-1319 Sentence denotes In addition, a new O-glycosylation site was identified at Thr279 in the connecting segment between the fibrin- and heparin-binding domain and the collagen-binding domain, and the glycopeptide was reactive to a peanut agglutinin lectin.
T7 1320-1592 Sentence denotes Considering that another mucin-type O-glycosylation site lies within a different connecting segment, the O-glycosylation of FN was suggested to play a significant role in segregating the neighboring domains and thus maintaining the topology of FN and the domain functions.
T8 1593-1775 Sentence denotes In addition, the method was applied to apolipoprotein B-100 (apoB100) whose N-glycan structures at 17 of 19 potential sites have been reported, and characterized the remaining sites.
T9 1776-1922 Sentence denotes The results also demonstrated that the enriched glycopeptide provides resources for site-specific analysis of oligosaccharides in glycoproteomics.

GlycoBiology-Motifs

Id Subject Object Predicate Lexical cue
T1 1199-1206 http://rdf.glycoinfo.org/glycan/G54161DR denotes heparin
T2 1669-1677 http://rdf.glycoinfo.org/glycan/G00027MO denotes N-glycan

performance-test

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 278-285 http://purl.obolibrary.org/obo/UBERON_0000062 denotes organic
PD-UBERON-AE-B_T2 515-522 http://purl.obolibrary.org/obo/UBERON_0000062 denotes organic

Lectin-Jamboree

Id Subject Object Predicate Lexical cue
T1 1312-1318 lectin denotes lectin

Lectin-Jamboree-Sentence

Id Subject Object Predicate Lexical cue
T1 0-157 Sentence denotes Differential analysis of site-specific glycans on plasma and cellular fibronectins: application of a hydrophilic affinity method for glycopeptide enrichment.
T2 158-412 Sentence denotes Isolation of glycopeptides utilizing hydrogen bonding between glycopeptide glycans and a carbohydrate-gel matrix in the organic phase is useful for site-specific characterization of oligosaccharides of glycoproteins, when combined with mass spectrometry.
T3 413-692 Sentence denotes In this study, recovery of glycopeptides was improved by including divalent cations or increasing the organic solvent in the binding solution, without losing specificity, whereas it was still less effective for those with a long peptide backbone exceeding 50 amino acid residues.
T4 693-848 Sentence denotes The method was then applied to the analysis of glycan heterogeneities at seven N-glycosylation sites in each of the plasma and cellular fibronectins (FNs).
T5 849-1083 Sentence denotes There was a remarkable site-specific difference in fucosylation between these isoforms; Asn1244 selectively escaped the global fucosylation of cellular FN, whereas only Asn1007 and Asn2108 of the plasma isoform underwent modification.
T6 1084-1319 Sentence denotes In addition, a new O-glycosylation site was identified at Thr279 in the connecting segment between the fibrin- and heparin-binding domain and the collagen-binding domain, and the glycopeptide was reactive to a peanut agglutinin lectin.
T7 1320-1592 Sentence denotes Considering that another mucin-type O-glycosylation site lies within a different connecting segment, the O-glycosylation of FN was suggested to play a significant role in segregating the neighboring domains and thus maintaining the topology of FN and the domain functions.
T8 1593-1775 Sentence denotes In addition, the method was applied to apolipoprotein B-100 (apoB100) whose N-glycan structures at 17 of 19 potential sites have been reported, and characterized the remaining sites.
T9 1776-1922 Sentence denotes The results also demonstrated that the enriched glycopeptide provides resources for site-specific analysis of oligosaccharides in glycoproteomics.

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 50-56 Body_part denotes plasma http://purl.obolibrary.org/obo/UBERON_0001969
T2 650-658 Body_part denotes backbone http://purl.obolibrary.org/obo/UBERON_0001130
T3 809-815 Body_part denotes plasma http://purl.obolibrary.org/obo/UBERON_0001969
T4 1045-1051 Body_part denotes plasma http://purl.obolibrary.org/obo/UBERON_0001969
T5 1167-1174 Body_part denotes segment http://purl.obolibrary.org/obo/UBERON_0000914
T6 1412-1419 Body_part denotes segment http://purl.obolibrary.org/obo/UBERON_0000914