PubMed:16000696
Annnotations
Glycan-Motif
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 379-386 | https://glytoucan.org/Structures/Glycans/G00051MO | denotes | Lewis X |
T2 | 485-492 | https://glytoucan.org/Structures/Glycans/G00047MO | denotes | Lewis A |
T3 | 1482-1489 | https://glytoucan.org/Structures/Glycans/G00047MO | denotes | Lewis A |
T4 | 1491-1505 | https://glytoucan.org/Structures/Glycans/G00053MO | denotes | sialyl Lewis A |
GlyCosmos6-Glycan-Motif-Image
Id | Subject | Object | Predicate | Lexical cue | image |
---|---|---|---|---|---|
T1 | 379-386 | Glycan_Motif | denotes | Lewis X | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G01187XC|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00051MO |
T3 | 485-492 | Glycan_Motif | denotes | Lewis A | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G39023AU|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00047MO |
T5 | 1482-1489 | Glycan_Motif | denotes | Lewis A | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G39023AU|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00047MO |
T7 | 1491-1505 | Glycan_Motif | denotes | sialyl Lewis A | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G81971FM|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00053MO |
Glycosmos6-MAT
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 358-363 | http://purl.obolibrary.org/obo/MAT_0000083 | denotes | blood |
T2 | 358-363 | http://purl.obolibrary.org/obo/MAT_0000315 | denotes | blood |
T3 | 464-469 | http://purl.obolibrary.org/obo/MAT_0000083 | denotes | blood |
T4 | 464-469 | http://purl.obolibrary.org/obo/MAT_0000315 | denotes | blood |
sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
TextSentencer_T1 | 0-104 | Sentence | denotes | Molecular cloning and functional expression of a novel Helicobacter pylori alpha-1,4 fucosyltransferase. |
TextSentencer_T2 | 105-253 | Sentence | denotes | Helicobacter pylori is an important human pathogen which causes both gastric and duodenal ulcers and is associated with gastric cancer and lymphoma. |
TextSentencer_T3 | 254-499 | Sentence | denotes | This microorganism synthesizes fucosylated oligosaccharides, predominantly the Galb-1,4GlcNAc (Type II) blood group antigens Lewis X and Y, whereas a small population also expresses the Galb-1,3GlcNAc (Type I) blood group antigens Lewis A and B. |
TextSentencer_T4 | 500-632 | Sentence | denotes | These carbohydrate structures are known to mimic host cell antigens and permit the bacteria to escape from the host immune response. |
TextSentencer_T5 | 633-739 | Sentence | denotes | Here, we report the cloning and characterization of a novel H. pylori alpha-1,4 fucosyltransferase (FucT). |
TextSentencer_T6 | 740-865 | Sentence | denotes | In contrast to the family members characterized to date, this enzyme shows exclusively Type I acceptor substrate specificity. |
TextSentencer_T7 | 866-988 | Sentence | denotes | The enzyme consisting of 432 amino acids (MW 50,502 Da) was cloned using a polymerase chain reaction (PCR)-based approach. |
TextSentencer_T8 | 989-1141 | Sentence | denotes | It exhibits a high degree of identity (75-87%) and similar structural features, for example, in the heptamer repeat pattern, with other H. pylori FucTs. |
TextSentencer_T9 | 1142-1299 | Sentence | denotes | The kinetic characterization revealed a very efficient transferase (k(cat)/Km = 229 mM(-1) s(-1)) for the Type I acceptor substrate (Gal)-1,3 GlcNAc-Lem (1). |
TextSentencer_T10 | 1300-1534 | Sentence | denotes | Additionally, the enzyme possesses a broad tolerance toward nonnatural Type I acceptor substrate analogs and therefore represents a valuable tool for the chemoenzymatic synthesis of Lewis A, sialyl Lewis A as well as mimetics thereof. |
T1 | 0-104 | Sentence | denotes | Molecular cloning and functional expression of a novel Helicobacter pylori alpha-1,4 fucosyltransferase. |
T2 | 105-253 | Sentence | denotes | Helicobacter pylori is an important human pathogen which causes both gastric and duodenal ulcers and is associated with gastric cancer and lymphoma. |
T3 | 254-632 | Sentence | denotes | This microorganism synthesizes fucosylated oligosaccharides, predominantly the Galb-1,4GlcNAc (Type II) blood group antigens Lewis X and Y, whereas a small population also expresses the Galb-1,3GlcNAc (Type I) blood group antigens Lewis A and B. These carbohydrate structures are known to mimic host cell antigens and permit the bacteria to escape from the host immune response. |
T4 | 633-739 | Sentence | denotes | Here, we report the cloning and characterization of a novel H. pylori alpha-1,4 fucosyltransferase (FucT). |
T5 | 740-865 | Sentence | denotes | In contrast to the family members characterized to date, this enzyme shows exclusively Type I acceptor substrate specificity. |
T6 | 866-988 | Sentence | denotes | The enzyme consisting of 432 amino acids (MW 50,502 Da) was cloned using a polymerase chain reaction (PCR)-based approach. |
T7 | 989-1141 | Sentence | denotes | It exhibits a high degree of identity (75-87%) and similar structural features, for example, in the heptamer repeat pattern, with other H. pylori FucTs. |
T8 | 1142-1299 | Sentence | denotes | The kinetic characterization revealed a very efficient transferase (k(cat)/Km = 229 mM(-1) s(-1)) for the Type I acceptor substrate (Gal)-1,3 GlcNAc-Lem (1). |
T9 | 1300-1534 | Sentence | denotes | Additionally, the enzyme possesses a broad tolerance toward nonnatural Type I acceptor substrate analogs and therefore represents a valuable tool for the chemoenzymatic synthesis of Lewis A, sialyl Lewis A as well as mimetics thereof. |
T1 | 0-104 | Sentence | denotes | Molecular cloning and functional expression of a novel Helicobacter pylori alpha-1,4 fucosyltransferase. |
T2 | 105-253 | Sentence | denotes | Helicobacter pylori is an important human pathogen which causes both gastric and duodenal ulcers and is associated with gastric cancer and lymphoma. |
T3 | 254-499 | Sentence | denotes | This microorganism synthesizes fucosylated oligosaccharides, predominantly the Galb-1,4GlcNAc (Type II) blood group antigens Lewis X and Y, whereas a small population also expresses the Galb-1,3GlcNAc (Type I) blood group antigens Lewis A and B. |
T4 | 500-632 | Sentence | denotes | These carbohydrate structures are known to mimic host cell antigens and permit the bacteria to escape from the host immune response. |
T5 | 633-739 | Sentence | denotes | Here, we report the cloning and characterization of a novel H. pylori alpha-1,4 fucosyltransferase (FucT). |
T6 | 740-865 | Sentence | denotes | In contrast to the family members characterized to date, this enzyme shows exclusively Type I acceptor substrate specificity. |
T7 | 866-988 | Sentence | denotes | The enzyme consisting of 432 amino acids (MW 50,502 Da) was cloned using a polymerase chain reaction (PCR)-based approach. |
T8 | 989-1141 | Sentence | denotes | It exhibits a high degree of identity (75-87%) and similar structural features, for example, in the heptamer repeat pattern, with other H. pylori FucTs. |
T9 | 1142-1299 | Sentence | denotes | The kinetic characterization revealed a very efficient transferase (k(cat)/Km = 229 mM(-1) s(-1)) for the Type I acceptor substrate (Gal)-1,3 GlcNAc-Lem (1). |
T10 | 1300-1534 | Sentence | denotes | Additionally, the enzyme possesses a broad tolerance toward nonnatural Type I acceptor substrate analogs and therefore represents a valuable tool for the chemoenzymatic synthesis of Lewis A, sialyl Lewis A as well as mimetics thereof. |
GlyCosmos6-Glycan-Motif-Structure
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 379-386 | https://glytoucan.org/Structures/Glycans/G00051MO | denotes | Lewis X |
T2 | 485-492 | https://glytoucan.org/Structures/Glycans/G00047MO | denotes | Lewis A |
T3 | 1482-1489 | https://glytoucan.org/Structures/Glycans/G00047MO | denotes | Lewis A |
T4 | 1491-1505 | https://glytoucan.org/Structures/Glycans/G00053MO | denotes | sialyl Lewis A |
T5 | 1498-1505 | https://glytoucan.org/Structures/Glycans/G00047MO | denotes | Lewis A |
Glycosmos6-GlycoEpitope
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 379-386 | http://www.glycoepitope.jp/epitopes/EP0011 | denotes | Lewis X |
T2 | 485-492 | http://www.glycoepitope.jp/epitopes/EP0007 | denotes | Lewis A |
T3 | 1482-1489 | http://www.glycoepitope.jp/epitopes/EP0007 | denotes | Lewis A |
T4 | 1491-1505 | http://www.glycoepitope.jp/epitopes/EP0008 | denotes | sialyl Lewis A |
PubmedHPO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 174-201 | HP_0002592 | denotes | gastric and duodenal ulcers |
T2 | 186-201 | HP_0002588 | denotes | duodenal ulcers |
T3 | 225-239 | HP_0012126 | denotes | gastric cancer |
T4 | 233-239 | HP_0002664 | denotes | cancer |
T5 | 244-252 | HP_0002665 | denotes | lymphoma |
GlycoBiology-PACDB
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
_T1 | 55-74 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC049,LEC063,LEC070,LEC078,LEC107,LEC336,LEC343,LEC409,LEC419,LEC446,LEC582 | denotes | Helicobacter pylori |
_T2 | 55-74 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC444 | denotes | Helicobacter pylori |
_T3 | 55-74 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC362 | denotes | Helicobacter pylori |
_T4 | 55-74 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC121 | denotes | Helicobacter pylori |
_T5 | 105-124 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC362 | denotes | Helicobacter pylori |
_T6 | 105-124 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC121 | denotes | Helicobacter pylori |
_T7 | 105-124 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC049,LEC063,LEC070,LEC078,LEC107,LEC336,LEC343,LEC409,LEC419,LEC446,LEC582 | denotes | Helicobacter pylori |
_T8 | 105-124 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC444 | denotes | Helicobacter pylori |
ICD10
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 186-194 | http://purl.bioontology.org/ontology/ICD10/K29.8 | denotes | duodenal |
T2 | 186-201 | http://purl.bioontology.org/ontology/ICD10/K26 | denotes | duodenal ulcers |
uniprot-human
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 1197-1208 | http://www.uniprot.org/uniprot/Q99484 | denotes | transferase |
uniprot-mouse
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 1197-1208 | http://www.uniprot.org/uniprot/P38649 | denotes | transferase |
GlycoBiology-NCBITAXON
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 0-32 | http://purl.bioontology.org/ontology/STY/T044 | denotes | Molecular cloning and functional |
T2 | 55-67 | http://purl.bioontology.org/ontology/NCBITAXON/209 | denotes | Helicobacter |
T3 | 105-117 | http://purl.bioontology.org/ontology/NCBITAXON/209 | denotes | Helicobacter |
T4 | 233-239 | http://purl.bioontology.org/ontology/NCBITAXON/6754 | denotes | cancer |
T5 | 364-369 | http://purl.bioontology.org/ontology/STY/T096 | denotes | group |
T6 | 470-475 | http://purl.bioontology.org/ontology/STY/T096 | denotes | group |
T7 | 583-591 | http://purl.bioontology.org/ontology/NCBITAXON/629395 | denotes | bacteria |
T8 | 583-591 | http://purl.bioontology.org/ontology/NCBITAXON/2 | denotes | bacteria |
GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 285-296 | http://purl.obolibrary.org/obo/GO_0036065 | denotes | fucosylated |
T2 | 616-631 | http://purl.obolibrary.org/obo/GO_0006955 | denotes | immune response |
T3 | 733-737 | http://purl.obolibrary.org/obo/GO_0008424 | denotes | FucT |
T4 | 1135-1140 | http://purl.obolibrary.org/obo/GO_0008424 | denotes | FucTs |
T5 | 1212-1215 | http://purl.obolibrary.org/obo/GO_0004096 | denotes | cat |
T6 | 1469-1478 | http://purl.obolibrary.org/obo/GO_0009058 | denotes | synthesis |
T7 | 1491-1497 | http://purl.obolibrary.org/obo/GO_0097503 | denotes | sialyl |
GO-CC
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 549-553 | http://purl.obolibrary.org/obo/GO_0018995 | denotes | host |
T2 | 611-615 | http://purl.obolibrary.org/obo/GO_0018995 | denotes | host |
T3 | 549-558 | http://purl.obolibrary.org/obo/GO_0043657 | denotes | host cell |
T4 | 554-558 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
UBERON-AE
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 358-363 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
T2 | 464-469 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
NGLY1-deficiency
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
PD-NGLY1-deficiency-B_T1 | 1284-1290 | chem:24139 | denotes | GlcNAc |
GlycoBiology-MAT
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 358-363 | http://purl.obolibrary.org/obo/MAT_0000315 | denotes | blood |
T2 | 358-363 | http://purl.obolibrary.org/obo/MAT_0000083 | denotes | blood |
T3 | 464-469 | http://purl.obolibrary.org/obo/MAT_0000315 | denotes | blood |
T4 | 464-469 | http://purl.obolibrary.org/obo/MAT_0000083 | denotes | blood |
GlycoBiology-Motifs
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 358-369 | http://rdf.glycoinfo.org/glycan/G00066MO | denotes | blood group |
T2 | 464-475 | http://rdf.glycoinfo.org/glycan/G00066MO | denotes | blood group |
T3 | 379-384 | http://rdf.glycoinfo.org/glycan/G00047MO | denotes | Lewis |
T4 | 485-490 | http://rdf.glycoinfo.org/glycan/G00047MO | denotes | Lewis |
T5 | 1482-1487 | http://rdf.glycoinfo.org/glycan/G00047MO | denotes | Lewis |
T6 | 1498-1503 | http://rdf.glycoinfo.org/glycan/G00047MO | denotes | Lewis |
T7 | 379-386 | http://rdf.glycoinfo.org/glycan/G00051MO | denotes | Lewis X |
T8 | 1491-1503 | http://rdf.glycoinfo.org/glycan/G00053MO | denotes | sialyl Lewis |
GlyTouCan-IUPAC
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
GlycanIUPAC_T1 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G93924TT" | denotes | Gal |
GlycanIUPAC_T2 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G25565DN" | denotes | Gal |
GlycanIUPAC_T3 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G97215EV" | denotes | Gal |
GlycanIUPAC_T4 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G79664KO" | denotes | Gal |
GlycanIUPAC_T5 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G24107FU" | denotes | Gal |
GlycanIUPAC_T6 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G09864UE" | denotes | Gal |
GlycanIUPAC_T7 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G28032MC" | denotes | Gal |
GlycanIUPAC_T8 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G28005UP" | denotes | Gal |
GlycanIUPAC_T9 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G92708AT" | denotes | Gal |
GlycanIUPAC_T10 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G73757UC" | denotes | Gal |
GlycanIUPAC_T11 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G51062DM" | denotes | Gal |
GlycanIUPAC_T12 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G05866BJ" | denotes | Gal |
GlycanIUPAC_T13 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G87394FZ" | denotes | Gal |
GlycanIUPAC_T14 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G03871NF" | denotes | Gal |
GlycanIUPAC_T15 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G29377VE" | denotes | Gal |
GlycanIUPAC_T16 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G33457CX" | denotes | Gal |
GlycanIUPAC_T17 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G97368GU" | denotes | Gal |
GlycanIUPAC_T18 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G18512EL" | denotes | Gal |
GlycanIUPAC_T19 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G41137VS" | denotes | Gal |
GlycanIUPAC_T20 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G30521NA" | denotes | Gal |
GlycanIUPAC_T21 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G19388CD" | denotes | Gal |
GlycanIUPAC_T22 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G53151FU" | denotes | Gal |
GlycanIUPAC_T23 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G27105XC" | denotes | Gal |
GlycanIUPAC_T24 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G91210VM" | denotes | Gal |
GlycanIUPAC_T25 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G40841DE" | denotes | Gal |
GlycanIUPAC_T26 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G71241HP" | denotes | Gal |
GlycanIUPAC_T27 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G84636BJ" | denotes | Gal |
GlycanIUPAC_T28 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G47905LJ" | denotes | Gal |
GlycanIUPAC_T29 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G39340DV" | denotes | Gal |
GlycanIUPAC_T30 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G48801AQ" | denotes | Gal |
GlycanIUPAC_T31 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G14573NX" | denotes | Gal |
GlycanIUPAC_T32 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G56762TR" | denotes | Gal |
GlycanIUPAC_T33 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G20013XO" | denotes | Gal |
GlycanIUPAC_T34 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G39504DR" | denotes | Gal |
GlycanIUPAC_T35 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G35218RQ" | denotes | Gal |
GlycanIUPAC_T36 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G53048SH" | denotes | Gal |
GlycanIUPAC_T37 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G78418IX" | denotes | Gal |
GlycanIUPAC_T38 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G09780OD" | denotes | Gal |
GlycanIUPAC_T39 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G56359GL" | denotes | Gal |
GlycanIUPAC_T40 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G78941YC" | denotes | Gal |
GlycanIUPAC_T41 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G26829FC" | denotes | Gal |
GlycanIUPAC_T42 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G88538ZC" | denotes | Gal |
GlycanIUPAC_T43 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G46593ZR" | denotes | Gal |
GlycanIUPAC_T44 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G43523TH" | denotes | Gal |
GlycanIUPAC_T45 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G36445ON" | denotes | Gal |
GlycanIUPAC_T46 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G67363FK" | denotes | Gal |
GlycanIUPAC_T47 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G17562KT" | denotes | Gal |
GlycanIUPAC_T48 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G24774YJ" | denotes | Gal |
GlycanIUPAC_T49 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G32162UO" | denotes | Gal |
GlycanIUPAC_T50 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G89163RR" | denotes | Gal |
GlycanIUPAC_T51 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G99522DY" | denotes | Gal |
GlycanIUPAC_T52 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G59246IF" | denotes | Gal |
GlycanIUPAC_T53 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G95321NT" | denotes | Gal |
GlycanIUPAC_T54 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G17531ZI" | denotes | Gal |
GlycanIUPAC_T55 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G54322SU" | denotes | Gal |
GlycanIUPAC_T56 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G72010DO" | denotes | Gal |
GlycanIUPAC_T57 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G44269EP" | denotes | Gal |
GlycanIUPAC_T58 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G57335AD" | denotes | Gal |
GlycanIUPAC_T59 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G60837LL" | denotes | Gal |
GlycanIUPAC_T60 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G61929XX" | denotes | Gal |
GlycanIUPAC_T61 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G88747RA" | denotes | Gal |
GlycanIUPAC_T62 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G47955HA" | denotes | Gal |
GlycanIUPAC_T63 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G60982WS" | denotes | Gal |
GlycanIUPAC_T64 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G37035KG" | denotes | Gal |
GlycanIUPAC_T65 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G46297FI" | denotes | Gal |
GlycanIUPAC_T66 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G35475KI" | denotes | Gal |
GlycanIUPAC_T67 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G29771JN" | denotes | Gal |
GlycanIUPAC_T68 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G61285YR" | denotes | Gal |
GlycanIUPAC_T69 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G54785MW" | denotes | Gal |
GlycanIUPAC_T70 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G53039GT" | denotes | Gal |
GlycanIUPAC_T71 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G00601HK" | denotes | Gal |
GlycanIUPAC_T72 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G10485IJ" | denotes | Gal |
GlycanIUPAC_T73 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G16393IB" | denotes | Gal |
GlycanIUPAC_T74 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G98436FZ" | denotes | Gal |
GlycanIUPAC_T75 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G18825IA" | denotes | Gal |
GlycanIUPAC_T76 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G61281HQ" | denotes | Gal |
GlycanIUPAC_T77 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G07798TI" | denotes | Gal |
GlycanIUPAC_T78 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G55921QA" | denotes | Gal |
GlycanIUPAC_T79 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G99066DL" | denotes | Gal |
GlycanIUPAC_T80 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G33451PQ" | denotes | Gal |
GlycanIUPAC_T81 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G02111XU" | denotes | Gal |
GlycanIUPAC_T82 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G85193OM" | denotes | Gal |
GlycanIUPAC_T83 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G89174YQ" | denotes | Gal |
GlycanIUPAC_T84 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G28802LE" | denotes | Gal |
GlycanIUPAC_T85 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G56061JK" | denotes | Gal |
GlycanIUPAC_T86 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G68941BC" | denotes | Gal |
GlycanIUPAC_T87 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G55436FC" | denotes | Gal |
GlycanIUPAC_T88 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G24002PU" | denotes | Gal |
GlycanIUPAC_T89 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G61387SV" | denotes | Gal |
GlycanIUPAC_T90 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G31834HW" | denotes | Gal |
GlycanIUPAC_T91 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G35324RT" | denotes | Gal |
GlycanIUPAC_T92 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G34803QO" | denotes | Gal |
GlycanIUPAC_T93 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G92898FF" | denotes | Gal |
GlycanIUPAC_T94 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G01318VX" | denotes | Gal |
GlycanIUPAC_T95 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G83200MX" | denotes | Gal |
GlycanIUPAC_T96 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G56286UC" | denotes | Gal |
GlycanIUPAC_T97 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G07304QA" | denotes | Gal |
GlycanIUPAC_T98 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G06868OU" | denotes | Gal |
GlycanIUPAC_T99 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G12647BS" | denotes | Gal |
GlycanIUPAC_T100 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G51841DF" | denotes | Gal |
GlycanIUPAC_T101 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G32122AJ" | denotes | Gal |
GlycanIUPAC_T102 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G41125MN" | denotes | Gal |
GlycanIUPAC_T103 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G16093XS" | denotes | Gal |
GlycanIUPAC_T104 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G62425IX" | denotes | Gal |
GlycanIUPAC_T105 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G15673TO" | denotes | Gal |
GlycanIUPAC_T106 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G32857IK" | denotes | Gal |
GlycanIUPAC_T107 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G60047CJ" | denotes | Gal |
GlycanIUPAC_T108 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G55718ZB" | denotes | Gal |
GlycanIUPAC_T109 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G88355ZE" | denotes | Gal |
GlycanIUPAC_T110 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G11283PA" | denotes | Gal |
GlycanIUPAC_T111 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G71737IZ" | denotes | Gal |
GlycanIUPAC_T112 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G60912WZ" | denotes | Gal |
GlycanIUPAC_T113 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G99655SO" | denotes | Gal |
GlycanIUPAC_T114 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G10300TW" | denotes | Gal |
GlycanIUPAC_T115 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G89509FL" | denotes | Gal |
GlycanIUPAC_T116 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G31465TH" | denotes | Gal |
GlycanIUPAC_T117 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G94101LU" | denotes | Gal |
GlycanIUPAC_T118 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G38610BB" | denotes | Gal |
GlycanIUPAC_T119 | 1275-1278 | "http://rdf.glycoinfo.org/glycan/G85893UF" | denotes | Gal |
GlycanIUPAC_T120 | 1284-1290 | "http://rdf.glycoinfo.org/glycan/G26693XF" | denotes | GlcNAc |
GlycanIUPAC_T121 | 1284-1290 | "http://rdf.glycoinfo.org/glycan/G01864SU" | denotes | GlcNAc |
GlycanIUPAC_T122 | 1284-1290 | "http://rdf.glycoinfo.org/glycan/G17605FD" | denotes | GlcNAc |
GlycanIUPAC_T123 | 1284-1290 | "http://rdf.glycoinfo.org/glycan/G41950LU" | denotes | GlcNAc |
GlycanIUPAC_T124 | 1284-1290 | "http://rdf.glycoinfo.org/glycan/G57195RJ" | denotes | GlcNAc |
GlycanIUPAC_T125 | 1284-1290 | "http://rdf.glycoinfo.org/glycan/G85391SA" | denotes | GlcNAc |
GlycanIUPAC_T126 | 1284-1290 | "http://rdf.glycoinfo.org/glycan/G89565QL" | denotes | GlcNAc |
GlycanIUPAC_T127 | 1284-1290 | "http://rdf.glycoinfo.org/glycan/G80869MR" | denotes | GlcNAc |
GlycanIUPAC_T128 | 1284-1290 | "http://rdf.glycoinfo.org/glycan/G55978NL" | denotes | GlcNAc |
GlycanIUPAC_T129 | 1284-1290 | "http://rdf.glycoinfo.org/glycan/G54644LT" | denotes | GlcNAc |
GlycanIUPAC_T130 | 1284-1290 | "http://rdf.glycoinfo.org/glycan/G25694UG" | denotes | GlcNAc |
GlycanIUPAC_T131 | 1284-1290 | "http://rdf.glycoinfo.org/glycan/G25126RB" | denotes | GlcNAc |
GlycanIUPAC_T132 | 1284-1290 | "http://rdf.glycoinfo.org/glycan/G51848AD" | denotes | GlcNAc |
GlycanIUPAC_T133 | 1284-1290 | "http://rdf.glycoinfo.org/glycan/G94667GM" | denotes | GlcNAc |
GlycanIUPAC_T134 | 1284-1290 | "http://rdf.glycoinfo.org/glycan/G30124BO" | denotes | GlcNAc |
GlycanIUPAC_T135 | 1284-1290 | "http://rdf.glycoinfo.org/glycan/G82777EZ" | denotes | GlcNAc |
GlycanIUPAC_T136 | 1284-1290 | "http://rdf.glycoinfo.org/glycan/G10151YZ" | denotes | GlcNAc |
GlycanIUPAC_T137 | 1284-1290 | "http://rdf.glycoinfo.org/glycan/G17585ZM" | denotes | GlcNAc |
GlycanIUPAC_T138 | 1284-1290 | "http://rdf.glycoinfo.org/glycan/G04411CJ" | denotes | GlcNAc |
GlycanIUPAC_T139 | 1284-1290 | "http://rdf.glycoinfo.org/glycan/G38254HJ" | denotes | GlcNAc |
GlycanIUPAC_T140 | 1284-1290 | "http://rdf.glycoinfo.org/glycan/G75188FS" | denotes | GlcNAc |
GlycanIUPAC_T141 | 1284-1290 | "http://rdf.glycoinfo.org/glycan/G70374VG" | denotes | GlcNAc |
GlycanIUPAC_T142 | 1284-1290 | "http://rdf.glycoinfo.org/glycan/G45176LJ" | denotes | GlcNAc |
GlycanIUPAC_T143 | 1284-1290 | "http://rdf.glycoinfo.org/glycan/G30874VW" | denotes | GlcNAc |
GlycanIUPAC_T144 | 1284-1290 | "http://rdf.glycoinfo.org/glycan/G69333MI" | denotes | GlcNAc |
GlycanIUPAC_T145 | 1284-1290 | "http://rdf.glycoinfo.org/glycan/G10676XO" | denotes | GlcNAc |
GlycanIUPAC_T146 | 1284-1290 | "http://rdf.glycoinfo.org/glycan/G14843DJ" | denotes | GlcNAc |
GlycanIUPAC_T147 | 1284-1290 | "http://rdf.glycoinfo.org/glycan/G47546FR" | denotes | GlcNAc |
GlycanIUPAC_T148 | 1284-1290 | "http://rdf.glycoinfo.org/glycan/G73695ZM" | denotes | GlcNAc |
GlycanIUPAC_T149 | 1284-1290 | "http://rdf.glycoinfo.org/glycan/G31923TJ" | denotes | GlcNAc |
GlycanIUPAC_T150 | 1284-1290 | "http://rdf.glycoinfo.org/glycan/G60519EP" | denotes | GlcNAc |
GlycanIUPAC_T151 | 1284-1290 | "http://rdf.glycoinfo.org/glycan/G07933IA" | denotes | GlcNAc |
GlycanIUPAC_T152 | 1284-1290 | "http://rdf.glycoinfo.org/glycan/G40745NH" | denotes | GlcNAc |
GlycanIUPAC_T153 | 1284-1290 | "http://rdf.glycoinfo.org/glycan/G54496YV" | denotes | GlcNAc |
GlycanIUPAC_T154 | 1284-1290 | "http://rdf.glycoinfo.org/glycan/G62953SQ" | denotes | GlcNAc |
GlycanIUPAC_T155 | 1284-1290 | "http://rdf.glycoinfo.org/glycan/G70070AY" | denotes | GlcNAc |
GlycanIUPAC_T156 | 1284-1290 | "http://rdf.glycoinfo.org/glycan/G78792WC" | denotes | GlcNAc |
GlycanIUPAC_T157 | 1284-1290 | "http://rdf.glycoinfo.org/glycan/G25238AV" | denotes | GlcNAc |
GlycanIUPAC_T158 | 1284-1290 | "http://rdf.glycoinfo.org/glycan/G40510DP" | denotes | GlcNAc |
GlycanIUPAC_T159 | 1284-1290 | "http://rdf.glycoinfo.org/glycan/G61120TK" | denotes | GlcNAc |
GlycanIUPAC_T160 | 1284-1290 | "http://rdf.glycoinfo.org/glycan/G41342KV" | denotes | GlcNAc |
GlycanIUPAC_T161 | 1284-1290 | "http://rdf.glycoinfo.org/glycan/G90703NA" | denotes | GlcNAc |
GlycanIUPAC_T162 | 1284-1290 | "http://rdf.glycoinfo.org/glycan/G01591HR" | denotes | GlcNAc |
GlycanIUPAC_T163 | 1284-1290 | "http://rdf.glycoinfo.org/glycan/G56520XN" | denotes | GlcNAc |
GlycanIUPAC_T164 | 1284-1290 | "http://rdf.glycoinfo.org/glycan/G81830JX" | denotes | GlcNAc |
GlycoBiology-Epitope
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
PD-GlycoEpitope-B_T1 | 1491-1505 | http://www.glycoepitope.jp/epitopes/EP0008 | denotes | sialyl Lewis A |
PD-GlycoEpitope-B_T2 | 379-386 | http://www.glycoepitope.jp/epitopes/EP0011 | denotes | Lewis X |
PD-GlycoEpitope-B_T3 | 485-492 | http://www.glycoepitope.jp/epitopes/EP0007 | denotes | Lewis A |
PD-GlycoEpitope-B_T4 | 1482-1489 | http://www.glycoepitope.jp/epitopes/EP0007 | denotes | Lewis A |
PD-GlycoEpitope-B_T5 | 1498-1505 | http://www.glycoepitope.jp/epitopes/EP0007 | denotes | Lewis A |
PD-GlycoEpitope-B_T6 | 1222-1225 | http://www.glycoepitope.jp/epitopes/AN0620 | denotes | 229 |
performance-test
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
PD-UBERON-AE-B_T1 | 358-363 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
PD-UBERON-AE-B_T2 | 464-469 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
mondo_disease
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T1 | 186-201 | Disease | denotes | duodenal ulcers | http://purl.obolibrary.org/obo/MONDO_0005412 |
T2 | 225-239 | Disease | denotes | gastric cancer | http://purl.obolibrary.org/obo/MONDO_0001056 |
T3 | 244-252 | Disease | denotes | lymphoma | http://purl.obolibrary.org/obo/MONDO_0005062 |
Anatomy-MAT
Id | Subject | Object | Predicate | Lexical cue | mat_id |
---|---|---|---|---|---|
T1 | 358-363 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/MAT_0000083|http://purl.obolibrary.org/obo/MAT_0000315 |
T3 | 464-469 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/MAT_0000083|http://purl.obolibrary.org/obo/MAT_0000315 |
HP-phenotype
Id | Subject | Object | Predicate | Lexical cue | hp_id |
---|---|---|---|---|---|
T1 | 186-201 | Phenotype | denotes | duodenal ulcers | HP:0002588 |
T2 | 225-239 | Phenotype | denotes | gastric cancer | HP:0012126 |
T3 | 244-252 | Phenotype | denotes | lymphoma | HP:0002665 |
Glycan-GlyCosmos
Id | Subject | Object | Predicate | Lexical cue | image |
---|---|---|---|---|---|
T1 | 379-386 | Glycan | denotes | Lewis X | https://api.glycosmos.org/wurcs2image/latest/png/binary/G00051MO |
T2 | 485-492 | Glycan | denotes | Lewis A | https://api.glycosmos.org/wurcs2image/latest/png/binary/G39023AU |
T3 | 1482-1489 | Glycan | denotes | Lewis A | https://api.glycosmos.org/wurcs2image/latest/png/binary/G39023AU |
T4 | 1491-1505 | Glycan | denotes | sialyl Lewis A | https://api.glycosmos.org/wurcs2image/latest/png/binary/G00053MO |
GlyCosmos-GlycoEpitope
Id | Subject | Object | Predicate | Lexical cue | glycoepitope_id |
---|---|---|---|---|---|
T1 | 379-386 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | Lewis X | http://www.glycoepitope.jp/epitopes/EP0011 |
T2 | 485-492 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | Lewis A | http://www.glycoepitope.jp/epitopes/EP0007 |
T3 | 1482-1489 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | Lewis A | http://www.glycoepitope.jp/epitopes/EP0007 |
T4 | 1491-1505 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | sialyl Lewis A | http://www.glycoepitope.jp/epitopes/EP0008 |
GlyCosmos15-HP
Id | Subject | Object | Predicate | Lexical cue | hp_id |
---|---|---|---|---|---|
T1 | 186-201 | Phenotype | denotes | duodenal ulcers | HP:0002588 |
T2 | 225-239 | Phenotype | denotes | gastric cancer | HP:0012126 |
T3 | 244-252 | Phenotype | denotes | lymphoma | HP:0002665 |
GlyCosmos15-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T1 | 186-201 | Disease | denotes | duodenal ulcers | http://purl.obolibrary.org/obo/MONDO_0005412 |
T2 | 225-239 | Disease | denotes | gastric cancer | http://purl.obolibrary.org/obo/MONDO_0001056 |
T3 | 244-252 | Disease | denotes | lymphoma | http://purl.obolibrary.org/obo/MONDO_0005062 |
GlyCosmos15-NCBITAXON
Id | Subject | Object | Predicate | Lexical cue | db_id |
---|---|---|---|---|---|
T1 | 55-74 | OrganismTaxon | denotes | Helicobacter pylori | 210 |
T2 | 105-124 | OrganismTaxon | denotes | Helicobacter pylori | 210 |
T3 | 141-146 | OrganismTaxon | denotes | human | 9606 |
T4 | 583-591 | OrganismTaxon | denotes | bacteria | 2|629395 |
T6 | 1212-1215 | OrganismTaxon | denotes | cat | 9685 |
GlyCosmos15-CL
Id | Subject | Object | Predicate | Lexical cue | cl_id |
---|---|---|---|---|---|
T1 | 456-462 | Cell | denotes | Type I | http://purl.obolibrary.org/obo/CL:0004120|http://purl.obolibrary.org/obo/CL:0004138 |
T3 | 827-833 | Cell | denotes | Type I | http://purl.obolibrary.org/obo/CL:0004120|http://purl.obolibrary.org/obo/CL:0004138 |
T5 | 1248-1254 | Cell | denotes | Type I | http://purl.obolibrary.org/obo/CL:0004120|http://purl.obolibrary.org/obo/CL:0004138 |
T7 | 1371-1377 | Cell | denotes | Type I | http://purl.obolibrary.org/obo/CL:0004120|http://purl.obolibrary.org/obo/CL:0004138 |
GlyCosmos15-UBERON
Id | Subject | Object | Predicate | Lexical cue | uberon_id |
---|---|---|---|---|---|
T1 | 358-363 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
T2 | 464-469 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
GlyCosmos15-MAT
Id | Subject | Object | Predicate | Lexical cue | mat_id |
---|---|---|---|---|---|
T1 | 358-363 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/MAT_0000083|http://purl.obolibrary.org/obo/MAT_0000315 |
T3 | 464-469 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/MAT_0000083|http://purl.obolibrary.org/obo/MAT_0000315 |
sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
TextSentencer_T1 | 0-104 | Sentence | denotes | Molecular cloning and functional expression of a novel Helicobacter pylori alpha-1,4 fucosyltransferase. |
TextSentencer_T2 | 105-253 | Sentence | denotes | Helicobacter pylori is an important human pathogen which causes both gastric and duodenal ulcers and is associated with gastric cancer and lymphoma. |
TextSentencer_T3 | 254-499 | Sentence | denotes | This microorganism synthesizes fucosylated oligosaccharides, predominantly the Galb-1,4GlcNAc (Type II) blood group antigens Lewis X and Y, whereas a small population also expresses the Galb-1,3GlcNAc (Type I) blood group antigens Lewis A and B. |
TextSentencer_T4 | 500-632 | Sentence | denotes | These carbohydrate structures are known to mimic host cell antigens and permit the bacteria to escape from the host immune response. |
TextSentencer_T5 | 633-739 | Sentence | denotes | Here, we report the cloning and characterization of a novel H. pylori alpha-1,4 fucosyltransferase (FucT). |
TextSentencer_T6 | 740-865 | Sentence | denotes | In contrast to the family members characterized to date, this enzyme shows exclusively Type I acceptor substrate specificity. |
TextSentencer_T7 | 866-988 | Sentence | denotes | The enzyme consisting of 432 amino acids (MW 50,502 Da) was cloned using a polymerase chain reaction (PCR)-based approach. |
TextSentencer_T8 | 989-1141 | Sentence | denotes | It exhibits a high degree of identity (75-87%) and similar structural features, for example, in the heptamer repeat pattern, with other H. pylori FucTs. |
TextSentencer_T9 | 1142-1299 | Sentence | denotes | The kinetic characterization revealed a very efficient transferase (k(cat)/Km = 229 mM(-1) s(-1)) for the Type I acceptor substrate (Gal)-1,3 GlcNAc-Lem (1). |
TextSentencer_T10 | 1300-1534 | Sentence | denotes | Additionally, the enzyme possesses a broad tolerance toward nonnatural Type I acceptor substrate analogs and therefore represents a valuable tool for the chemoenzymatic synthesis of Lewis A, sialyl Lewis A as well as mimetics thereof. |
T1 | 0-104 | Sentence | denotes | Molecular cloning and functional expression of a novel Helicobacter pylori alpha-1,4 fucosyltransferase. |
T2 | 105-253 | Sentence | denotes | Helicobacter pylori is an important human pathogen which causes both gastric and duodenal ulcers and is associated with gastric cancer and lymphoma. |
T3 | 254-632 | Sentence | denotes | This microorganism synthesizes fucosylated oligosaccharides, predominantly the Galb-1,4GlcNAc (Type II) blood group antigens Lewis X and Y, whereas a small population also expresses the Galb-1,3GlcNAc (Type I) blood group antigens Lewis A and B. These carbohydrate structures are known to mimic host cell antigens and permit the bacteria to escape from the host immune response. |
T4 | 633-739 | Sentence | denotes | Here, we report the cloning and characterization of a novel H. pylori alpha-1,4 fucosyltransferase (FucT). |
T5 | 740-865 | Sentence | denotes | In contrast to the family members characterized to date, this enzyme shows exclusively Type I acceptor substrate specificity. |
T6 | 866-988 | Sentence | denotes | The enzyme consisting of 432 amino acids (MW 50,502 Da) was cloned using a polymerase chain reaction (PCR)-based approach. |
T7 | 989-1141 | Sentence | denotes | It exhibits a high degree of identity (75-87%) and similar structural features, for example, in the heptamer repeat pattern, with other H. pylori FucTs. |
T8 | 1142-1299 | Sentence | denotes | The kinetic characterization revealed a very efficient transferase (k(cat)/Km = 229 mM(-1) s(-1)) for the Type I acceptor substrate (Gal)-1,3 GlcNAc-Lem (1). |
T9 | 1300-1534 | Sentence | denotes | Additionally, the enzyme possesses a broad tolerance toward nonnatural Type I acceptor substrate analogs and therefore represents a valuable tool for the chemoenzymatic synthesis of Lewis A, sialyl Lewis A as well as mimetics thereof. |
T1 | 0-104 | Sentence | denotes | Molecular cloning and functional expression of a novel Helicobacter pylori alpha-1,4 fucosyltransferase. |
T2 | 105-253 | Sentence | denotes | Helicobacter pylori is an important human pathogen which causes both gastric and duodenal ulcers and is associated with gastric cancer and lymphoma. |
T3 | 254-499 | Sentence | denotes | This microorganism synthesizes fucosylated oligosaccharides, predominantly the Galb-1,4GlcNAc (Type II) blood group antigens Lewis X and Y, whereas a small population also expresses the Galb-1,3GlcNAc (Type I) blood group antigens Lewis A and B. |
T4 | 500-632 | Sentence | denotes | These carbohydrate structures are known to mimic host cell antigens and permit the bacteria to escape from the host immune response. |
T5 | 633-739 | Sentence | denotes | Here, we report the cloning and characterization of a novel H. pylori alpha-1,4 fucosyltransferase (FucT). |
T6 | 740-865 | Sentence | denotes | In contrast to the family members characterized to date, this enzyme shows exclusively Type I acceptor substrate specificity. |
T7 | 866-988 | Sentence | denotes | The enzyme consisting of 432 amino acids (MW 50,502 Da) was cloned using a polymerase chain reaction (PCR)-based approach. |
T8 | 989-1141 | Sentence | denotes | It exhibits a high degree of identity (75-87%) and similar structural features, for example, in the heptamer repeat pattern, with other H. pylori FucTs. |
T9 | 1142-1299 | Sentence | denotes | The kinetic characterization revealed a very efficient transferase (k(cat)/Km = 229 mM(-1) s(-1)) for the Type I acceptor substrate (Gal)-1,3 GlcNAc-Lem (1). |
T10 | 1300-1534 | Sentence | denotes | Additionally, the enzyme possesses a broad tolerance toward nonnatural Type I acceptor substrate analogs and therefore represents a valuable tool for the chemoenzymatic synthesis of Lewis A, sialyl Lewis A as well as mimetics thereof. |
GlyCosmos15-Sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 0-104 | Sentence | denotes | Molecular cloning and functional expression of a novel Helicobacter pylori alpha-1,4 fucosyltransferase. |
T2 | 105-253 | Sentence | denotes | Helicobacter pylori is an important human pathogen which causes both gastric and duodenal ulcers and is associated with gastric cancer and lymphoma. |
T3 | 254-632 | Sentence | denotes | This microorganism synthesizes fucosylated oligosaccharides, predominantly the Galb-1,4GlcNAc (Type II) blood group antigens Lewis X and Y, whereas a small population also expresses the Galb-1,3GlcNAc (Type I) blood group antigens Lewis A and B. These carbohydrate structures are known to mimic host cell antigens and permit the bacteria to escape from the host immune response. |
T4 | 633-739 | Sentence | denotes | Here, we report the cloning and characterization of a novel H. pylori alpha-1,4 fucosyltransferase (FucT). |
T5 | 740-865 | Sentence | denotes | In contrast to the family members characterized to date, this enzyme shows exclusively Type I acceptor substrate specificity. |
T6 | 866-988 | Sentence | denotes | The enzyme consisting of 432 amino acids (MW 50,502 Da) was cloned using a polymerase chain reaction (PCR)-based approach. |
T7 | 989-1141 | Sentence | denotes | It exhibits a high degree of identity (75-87%) and similar structural features, for example, in the heptamer repeat pattern, with other H. pylori FucTs. |
T8 | 1142-1299 | Sentence | denotes | The kinetic characterization revealed a very efficient transferase (k(cat)/Km = 229 mM(-1) s(-1)) for the Type I acceptor substrate (Gal)-1,3 GlcNAc-Lem (1). |
T9 | 1300-1534 | Sentence | denotes | Additionally, the enzyme possesses a broad tolerance toward nonnatural Type I acceptor substrate analogs and therefore represents a valuable tool for the chemoenzymatic synthesis of Lewis A, sialyl Lewis A as well as mimetics thereof. |
GlyCosmos15-Glycan
Id | Subject | Object | Predicate | Lexical cue | image |
---|---|---|---|---|---|
T1 | 379-386 | Glycan | denotes | Lewis X | https://api.glycosmos.org/wurcs2image/latest/png/binary/G00051MO |
T2 | 485-492 | Glycan | denotes | Lewis A | https://api.glycosmos.org/wurcs2image/latest/png/binary/G39023AU |
T3 | 1482-1489 | Glycan | denotes | Lewis A | https://api.glycosmos.org/wurcs2image/latest/png/binary/G39023AU |
T4 | 1491-1505 | Glycan | denotes | sialyl Lewis A | https://api.glycosmos.org/wurcs2image/latest/png/binary/G00053MO |
GlyCosmos15-GlycoEpitope
Id | Subject | Object | Predicate | Lexical cue | glycoepitope_id |
---|---|---|---|---|---|
T1 | 379-386 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | Lewis X | http://www.glycoepitope.jp/epitopes/EP0011 |
T2 | 485-492 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | Lewis A | http://www.glycoepitope.jp/epitopes/EP0007 |
T3 | 1482-1489 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | Lewis A | http://www.glycoepitope.jp/epitopes/EP0007 |
T4 | 1491-1505 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | sialyl Lewis A | http://www.glycoepitope.jp/epitopes/EP0008 |
NCBITAXON
Id | Subject | Object | Predicate | Lexical cue | db_id |
---|---|---|---|---|---|
T1 | 55-74 | OrganismTaxon | denotes | Helicobacter pylori | 210 |
T2 | 105-124 | OrganismTaxon | denotes | Helicobacter pylori | 210 |
T3 | 141-146 | OrganismTaxon | denotes | human | 9606 |
T4 | 583-591 | OrganismTaxon | denotes | bacteria | 2|629395 |
T6 | 1212-1215 | OrganismTaxon | denotes | cat | 9685 |
Anatomy-UBERON
Id | Subject | Object | Predicate | Lexical cue | uberon_id |
---|---|---|---|---|---|
T1 | 358-363 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
T2 | 464-469 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
CL-cell
Id | Subject | Object | Predicate | Lexical cue | cl_id |
---|---|---|---|---|---|
T1 | 456-462 | Cell | denotes | Type I | http://purl.obolibrary.org/obo/CL:0004120|http://purl.obolibrary.org/obo/CL:0004138 |
T3 | 827-833 | Cell | denotes | Type I | http://purl.obolibrary.org/obo/CL:0004120|http://purl.obolibrary.org/obo/CL:0004138 |
T5 | 1248-1254 | Cell | denotes | Type I | http://purl.obolibrary.org/obo/CL:0004120|http://purl.obolibrary.org/obo/CL:0004138 |
T7 | 1371-1377 | Cell | denotes | Type I | http://purl.obolibrary.org/obo/CL:0004120|http://purl.obolibrary.org/obo/CL:0004138 |