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PubMed:15867855 JSONTXT

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LitCoin-entities-OrganismTaxon-PD

Id Subject Object Predicate Lexical cue db_id
T1 725-742 OrganismTaxon denotes hepatitis A virus NCBItxid:12092
T2 1410-1427 OrganismTaxon denotes hepatitis A virus NCBItxid:12092

LitCoin-sentences

Id Subject Object Predicate Lexical cue
T1 0-162 Sentence denotes Genetic variants of the T-cell immunoglobulin mucin 1 but not the T-cell immunoglobulin mucin 3 gene are associated with asthma in an African American population.
T2 163-174 Sentence denotes BACKGROUND:
T3 175-318 Sentence denotes The T-cell immunoglobulin mucin ( TIM ) proteins and their genetic variants have been suggested to play a role in regulating allergic diseases.
T4 319-329 Sentence denotes OBJECTIVE:
T5 330-464 Sentence denotes Genetic association of the sequence variants for TIM-1 and TIM-3 genes with asthma in an African American population was investigated.
T6 465-473 Sentence denotes METHODS:
T7 474-708 Sentence denotes Both case-control and family-based association analyses were performed for a total of 7 polymorphisms, including 3 single nucleotide polymorphism (SNPs) and 1 insertion/deletion polymorphism in the TIM-1 and 3 SNPs in the TIM-3 genes.
T8 709-789 Sentence denotes The exposure to hepatitis A virus as judged by seropositivity was also examined.
T9 790-798 Sentence denotes RESULTS:
T10 799-1121 Sentence denotes In the case-control design, the frequencies of the TT genotype for SNP rs2277025 and the homozygous deletion variant (157delMTTTVP) in the fourth exon of the TIM-1 gene were higher among patients with patients with asthma compared with the controls (odds ratio [OR], 2.779, P = .016; and OR, 3.09, P = .022, respectively).
T11 1122-1352 Sentence denotes This association was substantiated by haplotype analysis of these and 2 additional SNPs (OR, 2.48; P = .004), and also by family-based tests for the allele and haplotype carrying 157delMTTTVP (P = .009 and P = .048, respectively).
T12 1353-1462 Sentence denotes Furthermore, this association seems to exist even in the hepatitis A virus-seronegative subjects in our data.
T13 1463-1581 Sentence denotes None of the 3 variants in TIM-3 genes yielded significant association with either asthma or asthma-related phenotypes.
T14 1582-1593 Sentence denotes CONCLUSION:
T15 1594-1749 Sentence denotes Our findings suggest that the genetic variants of the TIM-1 but not the TIM-3 gene contribute to asthma susceptibility in this African-American population.

LitCoin-entities

Id Subject Object Predicate Lexical cue db_id
1857 24-53 GeneOrGeneProduct denotes T-cell immunoglobulin mucin 1 NCBIGene:26762
1858 66-95 GeneOrGeneProduct denotes T-cell immunoglobulin mucin 3 NCBIGene:84868
1859 121-127 DiseaseOrPhenotypicFeature denotes asthma MESH:D001249
1860 179-206 GeneOrGeneProduct denotes T-cell immunoglobulin mucin NCBIGene:26762|NCBIGene:84868
1861 209-212 GeneOrGeneProduct denotes TIM NCBIGene:26762|NCBIGene:84868
1862 300-317 DiseaseOrPhenotypicFeature denotes allergic diseases MESH:D004342
1863 379-384 GeneOrGeneProduct denotes TIM-1 NCBIGene:26762
1864 389-394 GeneOrGeneProduct denotes TIM-3 NCBIGene:84868
1865 406-412 DiseaseOrPhenotypicFeature denotes asthma MESH:D001249
1866 672-683 GeneOrGeneProduct denotes TIM-1 and 3 NCBIGene:26762|NCBIGene:84868
1867 696-701 GeneOrGeneProduct denotes TIM-3 NCBIGene:84868
1868 725-742 OrganismTaxon denotes hepatitis A virus NCBITaxon:208726
1869 870-879 SequenceVariant denotes rs2277025 DBSNP:rs2277025
1870 917-929 SequenceVariant denotes 157delMTTTVP p|DEL|157|MTTTVP
1871 957-962 GeneOrGeneProduct denotes TIM-1 NCBIGene:26762
1872 986-994 OrganismTaxon denotes patients NCBITaxon:9606
1873 1000-1008 OrganismTaxon denotes patients NCBITaxon:9606
1874 1014-1020 DiseaseOrPhenotypicFeature denotes asthma MESH:D001249
1875 1301-1313 SequenceVariant denotes 157delMTTTVP p|DEL|157|MTTTVP
1876 1410-1427 OrganismTaxon denotes hepatitis A virus NCBITaxon:208726
1877 1489-1494 GeneOrGeneProduct denotes TIM-3 NCBIGene:84868
1878 1545-1551 DiseaseOrPhenotypicFeature denotes asthma MESH:D001249
1879 1555-1561 DiseaseOrPhenotypicFeature denotes asthma MESH:D001249
1880 1648-1653 GeneOrGeneProduct denotes TIM-1 NCBIGene:26762
1881 1666-1671 GeneOrGeneProduct denotes TIM-3 NCBIGene:84868
1882 1691-1697 DiseaseOrPhenotypicFeature denotes asthma MESH:D001249

LitCoin_Mondo

Id Subject Object Predicate Lexical cue mondo_id
T1 121-127 DiseaseOrPhenotypicFeature denotes asthma 0004979
T2 300-317 DiseaseOrPhenotypicFeature denotes allergic diseases 0005271
T3 406-412 DiseaseOrPhenotypicFeature denotes asthma 0004979
T4 725-734 DiseaseOrPhenotypicFeature denotes hepatitis 0002251
T5 1014-1020 DiseaseOrPhenotypicFeature denotes asthma 0004979
T6 1410-1419 DiseaseOrPhenotypicFeature denotes hepatitis 0002251
T7 1545-1551 DiseaseOrPhenotypicFeature denotes asthma 0004979
T8 1555-1561 DiseaseOrPhenotypicFeature denotes asthma 0004979
T9 1691-1697 DiseaseOrPhenotypicFeature denotes asthma 0004979

LitCoin-SeqVar

Id Subject Object Predicate Lexical cue
T1 682-687 SequenceVariant denotes 3 SNP
T2 870-879 SequenceVariant denotes rs2277025
T3 917-929 SequenceVariant denotes 157delMTTTVP
T4 1301-1313 SequenceVariant denotes 157delMTTTVP

LitCoin-GeneOrGeneProduct-v0

Id Subject Object Predicate Lexical cue
T1 26-30 GeneOrGeneProduct denotes cell
T2 31-45 GeneOrGeneProduct denotes immunoglobulin
T3 46-51 GeneOrGeneProduct denotes mucin
T4 68-72 GeneOrGeneProduct denotes cell
T5 73-87 GeneOrGeneProduct denotes immunoglobulin
T6 88-93 GeneOrGeneProduct denotes mucin
T7 181-185 GeneOrGeneProduct denotes cell
T8 186-200 GeneOrGeneProduct denotes immunoglobulin
T9 201-206 GeneOrGeneProduct denotes mucin
T10 215-223 GeneOrGeneProduct denotes proteins
T11 289-299 GeneOrGeneProduct denotes regulating
T12 379-384 GeneOrGeneProduct denotes TIM-1
T13 389-394 GeneOrGeneProduct denotes TIM-3
T14 465-472 GeneOrGeneProduct denotes METHODS
T15 479-483 GeneOrGeneProduct denotes case
T16 503-508 GeneOrGeneProduct denotes based
T17 551-556 GeneOrGeneProduct denotes total
T18 627-632 GeneOrGeneProduct denotes and 1
T19 672-677 GeneOrGeneProduct denotes TIM-1
T20 678-683 GeneOrGeneProduct denotes and 3
T21 696-701 GeneOrGeneProduct denotes TIM-3
T22 806-810 GeneOrGeneProduct denotes case
T23 831-842 GeneOrGeneProduct denotes frequencies
T24 957-962 GeneOrGeneProduct denotes TIM-1
T25 1073-1081 GeneOrGeneProduct denotes P = .016
T26 1188-1193 GeneOrGeneProduct denotes and 2
T27 1251-1256 GeneOrGeneProduct denotes based
T28 1257-1262 GeneOrGeneProduct denotes tests
T29 1315-1323 GeneOrGeneProduct denotes P = .009
T30 1328-1336 GeneOrGeneProduct denotes P = .048
T31 1398-1402 GeneOrGeneProduct denotes even
T32 1463-1467 GeneOrGeneProduct denotes None
T33 1489-1494 GeneOrGeneProduct denotes TIM-3
T34 1501-1508 GeneOrGeneProduct denotes yielded
T35 1598-1606 GeneOrGeneProduct denotes findings
T36 1648-1653 GeneOrGeneProduct denotes TIM-1
T37 1666-1671 GeneOrGeneProduct denotes TIM-3

LitCoin-GeneOrGeneProduct-v2

Id Subject Object Predicate Lexical cue
T1 26-30 GeneOrGeneProduct denotes cell
T2 31-45 GeneOrGeneProduct denotes immunoglobulin
T3 46-51 GeneOrGeneProduct denotes mucin
T4 68-72 GeneOrGeneProduct denotes cell
T5 73-87 GeneOrGeneProduct denotes immunoglobulin
T6 88-93 GeneOrGeneProduct denotes mucin
T7 181-185 GeneOrGeneProduct denotes cell
T8 186-200 GeneOrGeneProduct denotes immunoglobulin
T9 201-206 GeneOrGeneProduct denotes mucin
T10 379-384 GeneOrGeneProduct denotes TIM-1
T11 389-394 GeneOrGeneProduct denotes TIM-3
T12 627-632 GeneOrGeneProduct denotes and 1
T13 672-677 GeneOrGeneProduct denotes TIM-1
T14 696-701 GeneOrGeneProduct denotes TIM-3
T15 957-962 GeneOrGeneProduct denotes TIM-1
T16 1398-1402 GeneOrGeneProduct denotes even
T17 1489-1494 GeneOrGeneProduct denotes TIM-3
T18 1648-1653 GeneOrGeneProduct denotes TIM-1
T19 1666-1671 GeneOrGeneProduct denotes TIM-3

LitCoin-Disease-MeSH

Id Subject Object Predicate Lexical cue originalLabel
T1 121-127 DiseaseOrPhenotypicFeature denotes asthma D001249
T2 309-317 DiseaseOrPhenotypicFeature denotes diseases D004194
T3 406-412 DiseaseOrPhenotypicFeature denotes asthma D001249
T4 725-734 DiseaseOrPhenotypicFeature denotes hepatitis D006505
T5 1014-1020 DiseaseOrPhenotypicFeature denotes asthma D001249
T6 1410-1419 DiseaseOrPhenotypicFeature denotes hepatitis D006505
T7 1545-1551 DiseaseOrPhenotypicFeature denotes asthma D001249
T8 1555-1561 DiseaseOrPhenotypicFeature denotes asthma D001249
T9 1691-1697 DiseaseOrPhenotypicFeature denotes asthma D001249

LitCoin-GeneOrGeneProduct-v3

Id Subject Object Predicate Lexical cue
T1 31-45 GeneOrGeneProduct denotes immunoglobulin
T2 46-53 GeneOrGeneProduct denotes mucin 1
T3 73-87 GeneOrGeneProduct denotes immunoglobulin
T4 88-95 GeneOrGeneProduct denotes mucin 3
T5 186-200 GeneOrGeneProduct denotes immunoglobulin
T6 379-384 GeneOrGeneProduct denotes TIM-1
T7 389-394 GeneOrGeneProduct denotes TIM-3
T8 672-677 GeneOrGeneProduct denotes TIM-1
T9 696-701 GeneOrGeneProduct denotes TIM-3
T10 957-962 GeneOrGeneProduct denotes TIM-1
T11 1489-1494 GeneOrGeneProduct denotes TIM-3
T12 1648-1653 GeneOrGeneProduct denotes TIM-1
T13 1666-1671 GeneOrGeneProduct denotes TIM-3

LitCoin_Mondo_095

Id Subject Object Predicate Lexical cue mondo_id
T1 121-127 DiseaseOrPhenotypicFeature denotes asthma 0004979
T2 300-317 DiseaseOrPhenotypicFeature denotes allergic diseases 0005271
T3 406-412 DiseaseOrPhenotypicFeature denotes asthma 0004979
T4 725-736 DiseaseOrPhenotypicFeature denotes hepatitis A 0005790
T5 1014-1020 DiseaseOrPhenotypicFeature denotes asthma 0004979
T6 1410-1421 DiseaseOrPhenotypicFeature denotes hepatitis A 0005790
T7 1545-1551 DiseaseOrPhenotypicFeature denotes asthma 0004979
T8 1555-1561 DiseaseOrPhenotypicFeature denotes asthma 0004979
T9 1691-1697 DiseaseOrPhenotypicFeature denotes asthma 0004979

LitCoin-MeSH-Disease-2

Id Subject Object Predicate Lexical cue ID:
T1 121-127 DiseaseOrPhenotypicFeature denotes asthma D001249
T2 309-317 DiseaseOrPhenotypicFeature denotes diseases D004194
T3 406-412 DiseaseOrPhenotypicFeature denotes asthma D001249
T4 725-734 DiseaseOrPhenotypicFeature denotes hepatitis D006505
T5 1014-1020 DiseaseOrPhenotypicFeature denotes asthma D001249
T6 1410-1419 DiseaseOrPhenotypicFeature denotes hepatitis D006505
T7 1545-1551 DiseaseOrPhenotypicFeature denotes asthma D001249
T8 1555-1561 DiseaseOrPhenotypicFeature denotes asthma D001249
T9 1691-1697 DiseaseOrPhenotypicFeature denotes asthma D001249

LitCoin-MONDO_bioort2019

Id Subject Object Predicate Lexical cue #label
T1 121-127 DiseaseOrPhenotypicFeature denotes asthma D001249
T2 406-412 DiseaseOrPhenotypicFeature denotes asthma D001249
T3 725-736 DiseaseOrPhenotypicFeature denotes hepatitis A D006506
T4 1014-1020 DiseaseOrPhenotypicFeature denotes asthma D001249
T5 1410-1421 DiseaseOrPhenotypicFeature denotes hepatitis A D006506
T6 1545-1551 DiseaseOrPhenotypicFeature denotes asthma D001249
T7 1555-1561 DiseaseOrPhenotypicFeature denotes asthma D001249
T8 1691-1697 DiseaseOrPhenotypicFeature denotes asthma D001249

LitCoin-NCBITaxon-2

Id Subject Object Predicate Lexical cue
T1 725-742 OrganismTaxon denotes hepatitis A virus
T2 986-994 OrganismTaxon denotes patients
T3 1000-1008 OrganismTaxon denotes patients
T4 1410-1427 OrganismTaxon denotes hepatitis A virus

LitCoin-training-merged

Id Subject Object Predicate Lexical cue #label
T13 1666-1671 GeneOrGeneProduct denotes TIM-3
T12 1648-1653 GeneOrGeneProduct denotes TIM-1
T11 1489-1494 GeneOrGeneProduct denotes TIM-3
T10 957-962 GeneOrGeneProduct denotes TIM-1
T9 696-701 GeneOrGeneProduct denotes TIM-3
T8 672-677 GeneOrGeneProduct denotes TIM-1
T7 389-394 GeneOrGeneProduct denotes TIM-3
T6 379-384 GeneOrGeneProduct denotes TIM-1
T5 186-200 GeneOrGeneProduct denotes immunoglobulin
T4 88-95 GeneOrGeneProduct denotes mucin 3
T3 73-87 GeneOrGeneProduct denotes immunoglobulin
T2 46-53 GeneOrGeneProduct denotes mucin 1
T1 31-45 GeneOrGeneProduct denotes immunoglobulin
T45992 1691-1697 DiseaseOrPhenotypicFeature denotes asthma D001249
T28858 1555-1561 DiseaseOrPhenotypicFeature denotes asthma D001249
T14125 1545-1551 DiseaseOrPhenotypicFeature denotes asthma D001249
T32898 1410-1421 DiseaseOrPhenotypicFeature denotes hepatitis A D006506
T81586 1014-1020 DiseaseOrPhenotypicFeature denotes asthma D001249
T52361 725-736 DiseaseOrPhenotypicFeature denotes hepatitis A D006506
T50303 406-412 DiseaseOrPhenotypicFeature denotes asthma D001249
T91213 121-127 DiseaseOrPhenotypicFeature denotes asthma D001249
T15443 1410-1427 OrganismTaxon denotes hepatitis A virus
T96063 1000-1008 OrganismTaxon denotes patients
T30333 986-994 OrganismTaxon denotes patients
T88897 725-742 OrganismTaxon denotes hepatitis A virus
T63941 1301-1313 SequenceVariant denotes 157delMTTTVP
T52344 917-929 SequenceVariant denotes 157delMTTTVP
T16316 870-879 SequenceVariant denotes rs2277025
T38706 682-687 SequenceVariant denotes 3 SNP

DisGeNET5_variant_disease

Id Subject Object Predicate Lexical cue
15867855-5#71#80#geners2277025 870-879 geners2277025 denotes rs2277025
15867855-5#215#221#diseaseC0004096 1014-1020 diseaseC0004096 denotes asthma
71#80#geners2277025215#221#diseaseC0004096 15867855-5#71#80#geners2277025 15867855-5#215#221#diseaseC0004096 associated_with rs2277025,asthma

DisGeNET5_gene_disease

Id Subject Object Predicate Lexical cue
15867855-0#46#53#gene4582 46-53 gene4582 denotes mucin 1
15867855-0#66#95#gene84868 66-95 gene84868 denotes T-cell immunoglobulin mucin 3
15867855-0#121#127#diseaseC0004096 121-127 diseaseC0004096 denotes asthma
15867855-9#54#59#gene7984 1648-1653 gene7984 denotes TIM-1
15867855-9#54#59#gene26762 1648-1653 gene26762 denotes TIM-1
15867855-9#54#59#gene8914 1648-1653 gene8914 denotes TIM-1
15867855-9#97#103#diseaseC0004096 1691-1697 diseaseC0004096 denotes asthma
46#53#gene4582121#127#diseaseC0004096 15867855-0#46#53#gene4582 15867855-0#121#127#diseaseC0004096 associated_with mucin 1,asthma
66#95#gene84868121#127#diseaseC0004096 15867855-0#66#95#gene84868 15867855-0#121#127#diseaseC0004096 associated_with T-cell immunoglobulin mucin 3,asthma
54#59#gene798497#103#diseaseC0004096 15867855-9#54#59#gene7984 15867855-9#97#103#diseaseC0004096 associated_with TIM-1,asthma
54#59#gene2676297#103#diseaseC0004096 15867855-9#54#59#gene26762 15867855-9#97#103#diseaseC0004096 associated_with TIM-1,asthma
54#59#gene891497#103#diseaseC0004096 15867855-9#54#59#gene8914 15867855-9#97#103#diseaseC0004096 associated_with TIM-1,asthma

tmVarCorpus

Id Subject Object Predicate Lexical cue
T1 870-879 SNP:rs2277025 denotes rs2277025
T2 917-929 ProteinMutation:p|DEL|157|MTTTVP denotes 157delMTTTVP
T3 1301-1313 ProteinMutation:p|DEL|157|MTTTVP denotes 157delMTTTVP

DisGeNET

Id Subject Object Predicate Lexical cue
T0 66-95 gene:84868 denotes T-cell immunoglobulin mucin 3
T1 121-127 disease:C0004096 denotes asthma
T2 46-53 gene:4582 denotes mucin 1
T3 121-127 disease:C0004096 denotes asthma
T4 379-384 gene:26762 denotes TIM-1
T5 406-412 disease:C0004096 denotes asthma
T6 389-394 gene:84868 denotes TIM-3
T7 406-412 disease:C0004096 denotes asthma
T8 379-384 gene:8914 denotes TIM-1
T9 406-412 disease:C0004096 denotes asthma
T10 379-384 gene:7984 denotes TIM-1
T11 406-412 disease:C0004096 denotes asthma
T12 957-962 gene:26762 denotes TIM-1
T13 1014-1020 disease:C0004096 denotes asthma
T14 1489-1494 gene:84868 denotes TIM-3
T15 1545-1551 disease:C0004096 denotes asthma
T16 1489-1494 gene:84868 denotes TIM-3
T17 1555-1561 disease:C0004096 denotes asthma
T18 1648-1653 gene:7984 denotes TIM-1
T19 1691-1697 disease:C0004096 denotes asthma
T20 1648-1653 gene:8914 denotes TIM-1
T21 1691-1697 disease:C0004096 denotes asthma
T22 1648-1653 gene:26762 denotes TIM-1
T23 1691-1697 disease:C0004096 denotes asthma
T24 1666-1671 gene:84868 denotes TIM-3
T25 1691-1697 disease:C0004096 denotes asthma
R1 T0 T1 associated_with T-cell immunoglobulin mucin 3,asthma
R2 T2 T3 associated_with mucin 1,asthma
R3 T4 T5 associated_with TIM-1,asthma
R4 T6 T7 associated_with TIM-3,asthma
R5 T8 T9 associated_with TIM-1,asthma
R6 T10 T11 associated_with TIM-1,asthma
R7 T12 T13 associated_with TIM-1,asthma
R8 T14 T15 associated_with TIM-3,asthma
R9 T16 T17 associated_with TIM-3,asthma
R10 T18 T19 associated_with TIM-1,asthma
R11 T20 T21 associated_with TIM-1,asthma
R12 T22 T23 associated_with TIM-1,asthma
R13 T24 T25 associated_with TIM-3,asthma

biored-valid-deepseek-nr-ng

Id Subject Object Predicate Lexical cue
T1 0-16 SequenceVariant denotes Genetic variants
T2 24-53 GeneOrGeneProduct denotes T-cell immunoglobulin mucin 1
T3 66-100 GeneOrGeneProduct denotes T-cell immunoglobulin mucin 3 gene
T4 121-127 DiseaseOrPhenotypicFeature denotes asthma
T5 134-150 OrganismTaxon denotes African American
T6 179-206 GeneOrGeneProduct denotes T-cell immunoglobulin mucin
T7 209-212 GeneOrGeneProduct denotes TIM
T8 379-384 GeneOrGeneProduct denotes TIM-1
T9 389-394 GeneOrGeneProduct denotes TIM-3
T10 406-412 DiseaseOrPhenotypicFeature denotes asthma
T11 419-435 OrganismTaxon denotes African American
T12 621-625 SequenceVariant denotes SNPs
T13 672-677 GeneOrGeneProduct denotes TIM-1
T14 684-688 SequenceVariant denotes SNPs
T15 696-701 GeneOrGeneProduct denotes TIM-3
T16 725-742 OrganismTaxon denotes hepatitis A virus
T17 870-879 SequenceVariant denotes rs2277025
T18 917-929 SequenceVariant denotes 157delMTTTVP
T19 957-962 GeneOrGeneProduct denotes TIM-1
T20 1014-1020 DiseaseOrPhenotypicFeature denotes asthma
T21 1489-1494 GeneOrGeneProduct denotes TIM-3
T22 1555-1580 DiseaseOrPhenotypicFeature denotes asthma-related phenotypes
T23 1721-1737 OrganismTaxon denotes African-American

biored-valid

Id Subject Object Predicate Lexical cue
T1 24-53 GeneOrGeneProduct denotes T-cell immunoglobulin mucin 1
T2 66-95 GeneOrGeneProduct denotes T-cell immunoglobulin mucin 3
T3 121-127 DiseaseOrPhenotypicFeature denotes asthma
T4 179-206 GeneOrGeneProduct denotes T-cell immunoglobulin mucin
T5 209-212 GeneOrGeneProduct denotes TIM
T6 300-317 DiseaseOrPhenotypicFeature denotes allergic diseases
T7 379-384 GeneOrGeneProduct denotes TIM-1
T8 389-394 GeneOrGeneProduct denotes TIM-3
T9 406-412 DiseaseOrPhenotypicFeature denotes asthma
T10 672-683 GeneOrGeneProduct denotes TIM-1 and 3
T11 696-701 GeneOrGeneProduct denotes TIM-3
T12 725-742 OrganismTaxon denotes hepatitis A virus
T13 870-879 SequenceVariant denotes rs2277025
T14 917-929 SequenceVariant denotes 157delMTTTVP
T15 957-962 GeneOrGeneProduct denotes TIM-1
T16 986-994 OrganismTaxon denotes patients
T17 1000-1008 OrganismTaxon denotes patients
T18 1014-1020 DiseaseOrPhenotypicFeature denotes asthma
T19 1301-1313 SequenceVariant denotes 157delMTTTVP
T20 1410-1427 OrganismTaxon denotes hepatitis A virus
T21 1489-1494 GeneOrGeneProduct denotes TIM-3
T22 1545-1551 DiseaseOrPhenotypicFeature denotes asthma
T23 1555-1561 DiseaseOrPhenotypicFeature denotes asthma
T24 1648-1653 GeneOrGeneProduct denotes TIM-1
T25 1666-1671 GeneOrGeneProduct denotes TIM-3
T26 1691-1697 DiseaseOrPhenotypicFeature denotes asthma

biored-valid-deepseek-nr-g

Id Subject Object Predicate Lexical cue
T1 24-53 GeneOrGeneProduct denotes T-cell immunoglobulin mucin 1
T2 66-95 GeneOrGeneProduct denotes T-cell immunoglobulin mucin 3
T3 121-127 DiseaseOrPhenotypicFeature denotes asthma
T4 134-150 OrganismTaxon denotes African American
T5 209-212 GeneOrGeneProduct denotes TIM
T6 379-384 GeneOrGeneProduct denotes TIM-1
T7 389-394 GeneOrGeneProduct denotes TIM-3
T8 406-412 DiseaseOrPhenotypicFeature denotes asthma
T9 672-677 GeneOrGeneProduct denotes TIM-1
T10 696-701 GeneOrGeneProduct denotes TIM-3
T11 725-742 OrganismTaxon denotes hepatitis A virus
T12 870-879 SequenceVariant denotes rs2277025
T13 917-929 SequenceVariant denotes 157delMTTTVP
T14 957-962 GeneOrGeneProduct denotes TIM-1
T15 1014-1020 DiseaseOrPhenotypicFeature denotes asthma
T16 1555-1580 DiseaseOrPhenotypicFeature denotes asthma-related phenotypes
T17 1721-1737 OrganismTaxon denotes African-American

biored-valid-deepseek-r-ng

Id Subject Object Predicate Lexical cue
T1 24-53 GeneOrGeneProduct denotes T-cell immunoglobulin mucin 1
T2 66-100 GeneOrGeneProduct denotes T-cell immunoglobulin mucin 3 gene
T3 121-127 DiseaseOrPhenotypicFeature denotes asthma
T4 209-212 GeneOrGeneProduct denotes TIM
T5 300-317 DiseaseOrPhenotypicFeature denotes allergic diseases
T6 379-384 GeneOrGeneProduct denotes TIM-1
T7 389-394 GeneOrGeneProduct denotes TIM-3
T8 406-412 DiseaseOrPhenotypicFeature denotes asthma
T9 696-701 GeneOrGeneProduct denotes TIM-3
T10 725-742 OrganismTaxon denotes hepatitis A virus
T11 870-879 SequenceVariant denotes rs2277025
T12 917-929 SequenceVariant denotes 157delMTTTVP
T13 1014-1020 DiseaseOrPhenotypicFeature denotes asthma
T14 1555-1580 DiseaseOrPhenotypicFeature denotes asthma-related phenotypes

biored-valid-deepseek-r-g

Id Subject Object Predicate Lexical cue
T1 24-53 GeneOrGeneProduct denotes T-cell immunoglobulin mucin 1
T2 66-100 GeneOrGeneProduct denotes T-cell immunoglobulin mucin 3 gene
T3 121-127 DiseaseOrPhenotypicFeature denotes asthma
T4 179-206 GeneOrGeneProduct denotes T-cell immunoglobulin mucin
T5 209-212 GeneOrGeneProduct denotes TIM
T6 379-384 GeneOrGeneProduct denotes TIM-1
T7 389-394 GeneOrGeneProduct denotes TIM-3
T8 406-412 DiseaseOrPhenotypicFeature denotes asthma
T9 672-677 GeneOrGeneProduct denotes TIM-1
T10 696-707 GeneOrGeneProduct denotes TIM-3 genes
T11 725-742 OrganismTaxon denotes hepatitis A virus
T12 866-879 SequenceVariant denotes SNP rs2277025
T13 917-929 SequenceVariant denotes 157delMTTTVP
T14 957-967 GeneOrGeneProduct denotes TIM-1 gene

biored-valid-gemini-nr-ng

Id Subject Object Predicate Lexical cue
T1 24-53 GeneOrGeneProduct denotes T-cell immunoglobulin mucin 1
T2 66-95 GeneOrGeneProduct denotes T-cell immunoglobulin mucin 3
T3 121-127 DiseaseOrPhenotypicFeature denotes asthma
T4 131-150 OrganismTaxon denotes an African American
T5 179-206 GeneOrGeneProduct denotes T-cell immunoglobulin mucin
T6 209-212 GeneOrGeneProduct denotes TIM
T7 300-317 DiseaseOrPhenotypicFeature denotes allergic diseases
T8 379-384 GeneOrGeneProduct denotes TIM-1
T9 389-394 GeneOrGeneProduct denotes TIM-3
T10 406-412 DiseaseOrPhenotypicFeature denotes asthma
T11 416-435 OrganismTaxon denotes an African American
T12 589-626 SequenceVariant denotes single nucleotide polymorphism (SNPs)
T13 633-664 SequenceVariant denotes insertion/deletion polymorphism
T14 672-677 GeneOrGeneProduct denotes TIM-1
T15 684-688 SequenceVariant denotes SNPs
T16 696-701 GeneOrGeneProduct denotes TIM-3
T17 725-742 OrganismTaxon denotes hepatitis A virus
T18 870-879 SequenceVariant denotes rs2277025
T19 888-915 SequenceVariant denotes homozygous deletion variant
T20 917-929 SequenceVariant denotes 157delMTTTVP
T21 957-962 GeneOrGeneProduct denotes TIM-1
T22 1014-1020 DiseaseOrPhenotypicFeature denotes asthma
T23 1489-1494 GeneOrGeneProduct denotes TIM-3
T24 1555-1580 DiseaseOrPhenotypicFeature denotes asthma-related phenotypes
T25 1691-1712 DiseaseOrPhenotypicFeature denotes asthma susceptibility
T26 1721-1737 OrganismTaxon denotes African-American

biored-valid-gemini-r-g

Id Subject Object Predicate Lexical cue
T1 24-53 GeneOrGeneProduct denotes T-cell immunoglobulin mucin 1
T2 66-95 GeneOrGeneProduct denotes T-cell immunoglobulin mucin 3
T3 121-127 DiseaseOrPhenotypicFeature denotes asthma
T4 179-214 GeneOrGeneProduct denotes T-cell immunoglobulin mucin ( TIM )
T5 300-317 DiseaseOrPhenotypicFeature denotes allergic diseases
T6 379-384 GeneOrGeneProduct denotes TIM-1
T7 389-394 GeneOrGeneProduct denotes TIM-3
T8 406-412 DiseaseOrPhenotypicFeature denotes asthma
T9 672-677 GeneOrGeneProduct denotes TIM-1
T10 696-701 GeneOrGeneProduct denotes TIM-3
T11 725-742 OrganismTaxon denotes hepatitis A virus
T12 870-879 SequenceVariant denotes rs2277025
T13 917-929 SequenceVariant denotes 157delMTTTVP
T14 957-962 GeneOrGeneProduct denotes TIM-1
T15 1014-1020 DiseaseOrPhenotypicFeature denotes asthma
T16 1489-1494 GeneOrGeneProduct denotes TIM-3
T17 1545-1551 DiseaseOrPhenotypicFeature denotes asthma
T18 1555-1580 DiseaseOrPhenotypicFeature denotes asthma-related phenotypes

PubTator4TogoVar

Id Subject Object Predicate Lexical cue resolved_to
34 870-879 SNP denotes rs2277025 tmVar:rs2277025;VariantGroup:0;CorrespondingGene:26762;RS#:2277025;CorrespondingSpecies:9606

biored-valid-gemini-r-ng

Id Subject Object Predicate Lexical cue
T1 24-53 GeneOrGeneProduct denotes T-cell immunoglobulin mucin 1
T2 66-100 GeneOrGeneProduct denotes T-cell immunoglobulin mucin 3 gene
T3 121-127 DiseaseOrPhenotypicFeature denotes asthma
T4 134-150 OrganismTaxon denotes African American
T5 179-223 GeneOrGeneProduct denotes T-cell immunoglobulin mucin ( TIM ) proteins
T6 300-317 DiseaseOrPhenotypicFeature denotes allergic diseases
T7 379-384 GeneOrGeneProduct denotes TIM-1
T8 389-400 GeneOrGeneProduct denotes TIM-3 genes
T9 406-412 DiseaseOrPhenotypicFeature denotes asthma
T10 419-435 OrganismTaxon denotes African American
T11 672-677 GeneOrGeneProduct denotes TIM-1
T12 696-707 GeneOrGeneProduct denotes TIM-3 genes
T13 725-742 OrganismTaxon denotes hepatitis A virus
T14 870-879 SequenceVariant denotes rs2277025
T15 917-929 SequenceVariant denotes 157delMTTTVP
T16 957-967 GeneOrGeneProduct denotes TIM-1 gene
T17 1014-1020 DiseaseOrPhenotypicFeature denotes asthma
T18 1410-1427 OrganismTaxon denotes hepatitis A virus
T19 1489-1500 GeneOrGeneProduct denotes TIM-3 genes
T20 1555-1580 DiseaseOrPhenotypicFeature denotes asthma-related phenotypes
T21 1648-1653 GeneOrGeneProduct denotes TIM-1
T22 1691-1712 DiseaseOrPhenotypicFeature denotes asthma susceptibility
T23 1721-1737 OrganismTaxon denotes African-American

biored-valid-gpt-nr-ng

Id Subject Object Predicate Lexical cue
T1 24-53 GeneOrGeneProduct denotes T-cell immunoglobulin mucin 1
T2 66-95 GeneOrGeneProduct denotes T-cell immunoglobulin mucin 3
T3 121-127 DiseaseOrPhenotypicFeature denotes asthma
T4 179-206 GeneOrGeneProduct denotes T-cell immunoglobulin mucin
T5 209-212 GeneOrGeneProduct denotes TIM
T6 300-317 DiseaseOrPhenotypicFeature denotes allergic diseases
T7 379-384 GeneOrGeneProduct denotes TIM-1
T8 389-394 GeneOrGeneProduct denotes TIM-3
T9 406-412 DiseaseOrPhenotypicFeature denotes asthma
T10 672-677 GeneOrGeneProduct denotes TIM-1
T11 696-701 GeneOrGeneProduct denotes TIM-3
T12 725-742 OrganismTaxon denotes hepatitis A virus
T13 870-879 SequenceVariant denotes rs2277025
T14 917-929 SequenceVariant denotes 157delMTTTVP
T15 957-962 GeneOrGeneProduct denotes TIM-1
T16 1014-1020 DiseaseOrPhenotypicFeature denotes asthma
T17 1301-1313 SequenceVariant denotes 157delMTTTVP
T18 1410-1427 OrganismTaxon denotes hepatitis A virus
T19 1489-1494 GeneOrGeneProduct denotes TIM-3
T20 1545-1551 DiseaseOrPhenotypicFeature denotes asthma
T21 1555-1580 DiseaseOrPhenotypicFeature denotes asthma-related phenotypes
T22 1648-1653 GeneOrGeneProduct denotes TIM-1
T23 1666-1671 GeneOrGeneProduct denotes TIM-3
T24 1691-1697 DiseaseOrPhenotypicFeature denotes asthma

biored-valid-gpt-nr-g

Id Subject Object Predicate Lexical cue
T1 24-53 GeneOrGeneProduct denotes T-cell immunoglobulin mucin 1
T2 66-95 GeneOrGeneProduct denotes T-cell immunoglobulin mucin 3
T3 121-127 DiseaseOrPhenotypicFeature denotes asthma
T4 179-206 GeneOrGeneProduct denotes T-cell immunoglobulin mucin
T5 209-212 GeneOrGeneProduct denotes TIM
T6 300-317 DiseaseOrPhenotypicFeature denotes allergic diseases
T7 379-384 GeneOrGeneProduct denotes TIM-1
T8 389-394 GeneOrGeneProduct denotes TIM-3
T9 406-412 DiseaseOrPhenotypicFeature denotes asthma
T10 672-677 GeneOrGeneProduct denotes TIM-1
T11 696-701 GeneOrGeneProduct denotes TIM-3
T12 725-742 OrganismTaxon denotes hepatitis A virus
T13 870-879 SequenceVariant denotes rs2277025
T14 917-929 SequenceVariant denotes 157delMTTTVP
T15 957-962 GeneOrGeneProduct denotes TIM-1
T16 1014-1020 DiseaseOrPhenotypicFeature denotes asthma
T17 1301-1313 SequenceVariant denotes 157delMTTTVP
T18 1489-1494 GeneOrGeneProduct denotes TIM-3
T19 1545-1551 DiseaseOrPhenotypicFeature denotes asthma
T20 1648-1653 GeneOrGeneProduct denotes TIM-1
T21 1666-1671 GeneOrGeneProduct denotes TIM-3
T22 1691-1697 DiseaseOrPhenotypicFeature denotes asthma

biored-valid-gpt-r-g

Id Subject Object Predicate Lexical cue
T1 24-53 GeneOrGeneProduct denotes T-cell immunoglobulin mucin 1
T2 66-100 GeneOrGeneProduct denotes T-cell immunoglobulin mucin 3 gene
T3 121-127 DiseaseOrPhenotypicFeature denotes asthma
T4 179-206 GeneOrGeneProduct denotes T-cell immunoglobulin mucin
T5 209-212 GeneOrGeneProduct denotes TIM
T6 300-317 DiseaseOrPhenotypicFeature denotes allergic diseases
T7 379-384 GeneOrGeneProduct denotes TIM-1
T8 389-394 GeneOrGeneProduct denotes TIM-3
T9 406-412 DiseaseOrPhenotypicFeature denotes asthma
T10 672-677 GeneOrGeneProduct denotes TIM-1
T11 696-701 GeneOrGeneProduct denotes TIM-3
T12 725-742 OrganismTaxon denotes hepatitis A virus
T13 870-879 SequenceVariant denotes rs2277025
T14 917-929 SequenceVariant denotes 157delMTTTVP
T15 957-962 GeneOrGeneProduct denotes TIM-1
T16 1014-1020 DiseaseOrPhenotypicFeature denotes asthma
T17 1301-1313 SequenceVariant denotes 157delMTTTVP
T18 1410-1427 OrganismTaxon denotes hepatitis A virus
T19 1489-1494 GeneOrGeneProduct denotes TIM-3
T20 1545-1551 DiseaseOrPhenotypicFeature denotes asthma
T21 1648-1653 GeneOrGeneProduct denotes TIM-1
T22 1666-1671 GeneOrGeneProduct denotes TIM-3
T23 1691-1697 DiseaseOrPhenotypicFeature denotes asthma

biored-valid-gpt-r-ng

Id Subject Object Predicate Lexical cue
T1 24-53 GeneOrGeneProduct denotes T-cell immunoglobulin mucin 1
T2 66-100 GeneOrGeneProduct denotes T-cell immunoglobulin mucin 3 gene
T3 121-127 DiseaseOrPhenotypicFeature denotes asthma
T4 179-206 GeneOrGeneProduct denotes T-cell immunoglobulin mucin
T5 209-212 GeneOrGeneProduct denotes TIM
T6 300-317 DiseaseOrPhenotypicFeature denotes allergic diseases
T7 379-384 GeneOrGeneProduct denotes TIM-1
T8 389-394 GeneOrGeneProduct denotes TIM-3
T9 406-412 DiseaseOrPhenotypicFeature denotes asthma
T10 672-677 GeneOrGeneProduct denotes TIM-1
T11 696-701 GeneOrGeneProduct denotes TIM-3
T12 725-742 OrganismTaxon denotes hepatitis A virus
T13 850-861 SequenceVariant denotes TT genotype
T14 870-879 SequenceVariant denotes rs2277025
T15 917-929 SequenceVariant denotes 157delMTTTVP
T16 957-962 GeneOrGeneProduct denotes TIM-1
T17 1014-1020 DiseaseOrPhenotypicFeature denotes asthma
T18 1301-1313 SequenceVariant denotes 157delMTTTVP
T19 1410-1427 OrganismTaxon denotes hepatitis A virus
T20 1489-1494 GeneOrGeneProduct denotes TIM-3
T21 1545-1551 DiseaseOrPhenotypicFeature denotes asthma
T22 1555-1580 DiseaseOrPhenotypicFeature denotes asthma-related phenotypes
T23 1648-1653 GeneOrGeneProduct denotes TIM-1
T24 1666-1671 GeneOrGeneProduct denotes TIM-3
T25 1691-1697 DiseaseOrPhenotypicFeature denotes asthma

biored-valid-gemini-nr-g

Id Subject Object Predicate Lexical cue
T1 24-53 GeneOrGeneProduct denotes T-cell immunoglobulin mucin 1
T2 66-95 GeneOrGeneProduct denotes T-cell immunoglobulin mucin 3
T3 121-127 DiseaseOrPhenotypicFeature denotes asthma
T4 179-206 GeneOrGeneProduct denotes T-cell immunoglobulin mucin
T5 209-212 GeneOrGeneProduct denotes TIM
T6 300-317 DiseaseOrPhenotypicFeature denotes allergic diseases
T7 379-384 GeneOrGeneProduct denotes TIM-1
T8 389-394 GeneOrGeneProduct denotes TIM-3
T9 406-412 DiseaseOrPhenotypicFeature denotes asthma
T10 589-619 SequenceVariant denotes single nucleotide polymorphism
T11 621-625 SequenceVariant denotes SNPs
T12 633-664 SequenceVariant denotes insertion/deletion polymorphism
T13 672-677 GeneOrGeneProduct denotes TIM-1
T14 684-687 SequenceVariant denotes SNP
T15 696-701 GeneOrGeneProduct denotes TIM-3
T16 725-742 OrganismTaxon denotes hepatitis A virus
T17 870-879 SequenceVariant denotes rs2277025
T18 888-915 SequenceVariant denotes homozygous deletion variant
T19 917-929 SequenceVariant denotes 157delMTTTVP
T20 1014-1020 DiseaseOrPhenotypicFeature denotes asthma
T21 1205-1209 SequenceVariant denotes SNPs
T22 1410-1427 OrganismTaxon denotes hepatitis A virus
T23 1489-1494 GeneOrGeneProduct denotes TIM-3
T24 1545-1551 DiseaseOrPhenotypicFeature denotes asthma
T25 1555-1580 DiseaseOrPhenotypicFeature denotes asthma-related phenotypes
T26 1648-1653 GeneOrGeneProduct denotes TIM-1

biored-valid-gpt-r-m

Id Subject Object Predicate Lexical cue
T1 24-53 GeneOrGeneProduct denotes T-cell immunoglobulin mucin 1
T2 66-95 GeneOrGeneProduct denotes T-cell immunoglobulin mucin 3
T3 121-127 DiseaseOrPhenotypicFeature denotes asthma
T4 179-206 GeneOrGeneProduct denotes T-cell immunoglobulin mucin
T5 209-212 GeneOrGeneProduct denotes TIM
T6 300-317 DiseaseOrPhenotypicFeature denotes allergic diseases
T7 379-384 GeneOrGeneProduct denotes TIM-1
T8 389-394 GeneOrGeneProduct denotes TIM-3
T9 406-412 DiseaseOrPhenotypicFeature denotes asthma
T10 672-677 GeneOrGeneProduct denotes TIM-1
T11 696-701 GeneOrGeneProduct denotes TIM-3
T12 725-742 OrganismTaxon denotes hepatitis A virus
T13 870-879 SequenceVariant denotes rs2277025
T14 917-929 SequenceVariant denotes 157delMTTTVP
T15 957-962 GeneOrGeneProduct denotes TIM-1
T16 986-994 OrganismTaxon denotes patients
T17 1014-1020 DiseaseOrPhenotypicFeature denotes asthma
T18 1039-1047 OrganismTaxon denotes controls
T19 1301-1313 SequenceVariant denotes 157delMTTTVP
T20 1410-1427 OrganismTaxon denotes hepatitis A virus
T21 1441-1449 OrganismTaxon denotes subjects
T22 1489-1494 GeneOrGeneProduct denotes TIM-3
T23 1545-1551 DiseaseOrPhenotypicFeature denotes asthma
T24 1648-1653 GeneOrGeneProduct denotes TIM-1
T25 1666-1671 GeneOrGeneProduct denotes TIM-3
T26 1691-1697 DiseaseOrPhenotypicFeature denotes asthma

biored-valid-gemini-r-m

Id Subject Object Predicate Lexical cue
T1 24-53 GeneOrGeneProduct denotes T-cell immunoglobulin mucin 1
T2 66-95 GeneOrGeneProduct denotes T-cell immunoglobulin mucin 3
T3 121-127 DiseaseOrPhenotypicFeature denotes asthma
T4 134-150 OrganismTaxon denotes African American
T5 179-206 GeneOrGeneProduct denotes T-cell immunoglobulin mucin
T6 209-212 GeneOrGeneProduct denotes TIM
T7 300-317 DiseaseOrPhenotypicFeature denotes allergic diseases
T8 379-384 GeneOrGeneProduct denotes TIM-1
T9 389-394 GeneOrGeneProduct denotes TIM-3
T10 406-412 DiseaseOrPhenotypicFeature denotes asthma
T11 419-435 OrganismTaxon denotes African American
T12 672-677 GeneOrGeneProduct denotes TIM-1
T13 696-701 GeneOrGeneProduct denotes TIM-3
T14 725-742 OrganismTaxon denotes hepatitis A virus
T15 756-770 DiseaseOrPhenotypicFeature denotes seropositivity
T16 870-879 SequenceVariant denotes rs2277025
T17 917-929 SequenceVariant denotes 157delMTTTVP
T18 957-962 GeneOrGeneProduct denotes TIM-1
T19 986-994 OrganismTaxon denotes patients
T20 1014-1020 DiseaseOrPhenotypicFeature denotes asthma
T21 1039-1047 OrganismTaxon denotes controls
T22 1301-1313 SequenceVariant denotes 157delMTTTVP
T23 1410-1440 DiseaseOrPhenotypicFeature denotes hepatitis A virus-seronegative
T24 1441-1449 OrganismTaxon denotes subjects
T25 1489-1494 GeneOrGeneProduct denotes TIM-3
T26 1545-1551 DiseaseOrPhenotypicFeature denotes asthma
T27 1555-1580 DiseaseOrPhenotypicFeature denotes asthma-related phenotypes
T28 1648-1653 GeneOrGeneProduct denotes TIM-1
T29 1691-1712 DiseaseOrPhenotypicFeature denotes asthma susceptibility
T30 1721-1737 OrganismTaxon denotes African-American

biored-valid-deepseek-r-m

Id Subject Object Predicate Lexical cue
T1 24-53 GeneOrGeneProduct denotes T-cell immunoglobulin mucin 1
T2 66-100 GeneOrGeneProduct denotes T-cell immunoglobulin mucin 3 gene
T3 121-127 DiseaseOrPhenotypicFeature denotes asthma
T4 179-206 GeneOrGeneProduct denotes T-cell immunoglobulin mucin
T5 209-212 GeneOrGeneProduct denotes TIM
T6 379-384 GeneOrGeneProduct denotes TIM-1
T7 389-400 GeneOrGeneProduct denotes TIM-3 genes
T8 406-412 DiseaseOrPhenotypicFeature denotes asthma
T9 672-677 GeneOrGeneProduct denotes TIM-1
T10 696-707 GeneOrGeneProduct denotes TIM-3 genes
T11 725-742 OrganismTaxon denotes hepatitis A virus
T12 866-879 SequenceVariant denotes SNP rs2277025
T13 917-929 SequenceVariant denotes 157delMTTTVP
T14 957-967 GeneOrGeneProduct denotes TIM-1 gene
T15 1014-1020 DiseaseOrPhenotypicFeature denotes asthma

PubTatorOnTogoVar

Id Subject Object Predicate Lexical cue resolved_to
34 870-879 SNP denotes rs2277025 tmVar:rs2277025;VariantGroup:0;CorrespondingGene:26762;RS#:2277025;CorrespondingSpecies:9606
T1 870-879 SNP denotes rs2277025 tmVar:rs2277025;VariantGroup:0;CorrespondingGene:26762;RS#:2277025;CorrespondingSpecies:9606