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PubMed:15843596 JSONTXT

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Glycan-Motif

Id Subject Object Predicate Lexical cue
T1 27-34 https://glytoucan.org/Structures/Glycans/G00021MO denotes heparin
T2 27-34 https://glytoucan.org/Structures/Glycans/G54161DR denotes heparin
T3 222-229 https://glytoucan.org/Structures/Glycans/G00021MO denotes heparin
T4 222-229 https://glytoucan.org/Structures/Glycans/G54161DR denotes heparin
T5 798-805 https://glytoucan.org/Structures/Glycans/G00021MO denotes heparin
T6 798-805 https://glytoucan.org/Structures/Glycans/G54161DR denotes heparin
T7 850-857 https://glytoucan.org/Structures/Glycans/G00021MO denotes heparin
T8 850-857 https://glytoucan.org/Structures/Glycans/G54161DR denotes heparin
T9 1030-1037 https://glytoucan.org/Structures/Glycans/G00021MO denotes heparin
T10 1030-1037 https://glytoucan.org/Structures/Glycans/G54161DR denotes heparin
T11 1324-1331 https://glytoucan.org/Structures/Glycans/G00021MO denotes heparin
T12 1324-1331 https://glytoucan.org/Structures/Glycans/G54161DR denotes heparin

GlyCosmos6-Glycan-Motif-Image

Id Subject Object Predicate Lexical cue image
T1 27-34 Glycan_Motif denotes heparin https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G54161DR|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00021MO
T3 222-229 Glycan_Motif denotes heparin https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G54161DR|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00021MO
T5 798-805 Glycan_Motif denotes heparin https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G54161DR|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00021MO
T7 850-857 Glycan_Motif denotes heparin https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G54161DR|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00021MO
T9 1030-1037 Glycan_Motif denotes heparin https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G54161DR|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00021MO
T11 1324-1331 Glycan_Motif denotes heparin https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G54161DR|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00021MO

GlyCosmos6-Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T1 27-34 https://glytoucan.org/Structures/Glycans/G00021MO denotes heparin
T2 27-34 https://glytoucan.org/Structures/Glycans/G54161DR denotes heparin
T3 222-229 https://glytoucan.org/Structures/Glycans/G00021MO denotes heparin
T4 222-229 https://glytoucan.org/Structures/Glycans/G54161DR denotes heparin
T5 798-805 https://glytoucan.org/Structures/Glycans/G00021MO denotes heparin
T6 798-805 https://glytoucan.org/Structures/Glycans/G54161DR denotes heparin
T7 850-857 https://glytoucan.org/Structures/Glycans/G00021MO denotes heparin
T8 850-857 https://glytoucan.org/Structures/Glycans/G54161DR denotes heparin
T9 1030-1037 https://glytoucan.org/Structures/Glycans/G00021MO denotes heparin
T10 1030-1037 https://glytoucan.org/Structures/Glycans/G54161DR denotes heparin
T11 1324-1331 https://glytoucan.org/Structures/Glycans/G00021MO denotes heparin
T12 1324-1331 https://glytoucan.org/Structures/Glycans/G54161DR denotes heparin

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-143 Sentence denotes Compositional profiling of heparin/heparan sulfate using mass spectrometry: assay for specificity of a novel extracellular human endosulfatase.
TextSentencer_T2 144-319 Sentence denotes An important class of carbohydrates studied within the field of glycobiology, heparin and heparan sulfate (HS) have been implicated in a diverse array of biological functions.
TextSentencer_T3 320-495 Sentence denotes Changes in their sulfation pattern and domain organization have been associated with different pathological situations such as viral infectivity, tumor growth, and metastasis.
TextSentencer_T4 496-809 Sentence denotes To obtain structural information about these biomolecules, and the modifications they may undergo during different stages of cell growth and development, a mass spectrometry-based method was developed and used to obtain unambiguous structural information on the glycosaminoglycans (GAGs) that comprise heparin/HS.
TextSentencer_T5 810-989 Sentence denotes The method was applied to assay for the heparin substrate specificity of a newly discovered human extracellular endosulfatase, HSulf-2, which has been implicated in tumorigenesis.
TextSentencer_T6 990-1085 Sentence denotes This new protocol incorporates 12 known heparin disaccharides, including three sets of isomers.
TextSentencer_T7 1086-1273 Sentence denotes A unique response factor (R) is determined for each disaccharide, whereas a multiplexed and data processing method is incorporated for faster data acquisition and quantification purposes.
TextSentencer_T8 1274-1384 Sentence denotes Proof of principle was performed by using various heparin/HS samples isolated from bovine and porcine tissues.
T1 0-143 Sentence denotes Compositional profiling of heparin/heparan sulfate using mass spectrometry: assay for specificity of a novel extracellular human endosulfatase.
T2 144-319 Sentence denotes An important class of carbohydrates studied within the field of glycobiology, heparin and heparan sulfate (HS) have been implicated in a diverse array of biological functions.
T3 320-495 Sentence denotes Changes in their sulfation pattern and domain organization have been associated with different pathological situations such as viral infectivity, tumor growth, and metastasis.
T4 496-809 Sentence denotes To obtain structural information about these biomolecules, and the modifications they may undergo during different stages of cell growth and development, a mass spectrometry-based method was developed and used to obtain unambiguous structural information on the glycosaminoglycans (GAGs) that comprise heparin/HS.
T5 810-989 Sentence denotes The method was applied to assay for the heparin substrate specificity of a newly discovered human extracellular endosulfatase, HSulf-2, which has been implicated in tumorigenesis.
T6 990-1085 Sentence denotes This new protocol incorporates 12 known heparin disaccharides, including three sets of isomers.
T7 1086-1273 Sentence denotes A unique response factor (R) is determined for each disaccharide, whereas a multiplexed and data processing method is incorporated for faster data acquisition and quantification purposes.
T8 1274-1384 Sentence denotes Proof of principle was performed by using various heparin/HS samples isolated from bovine and porcine tissues.
T1 0-143 Sentence denotes Compositional profiling of heparin/heparan sulfate using mass spectrometry: assay for specificity of a novel extracellular human endosulfatase.
T2 144-319 Sentence denotes An important class of carbohydrates studied within the field of glycobiology, heparin and heparan sulfate (HS) have been implicated in a diverse array of biological functions.
T3 320-495 Sentence denotes Changes in their sulfation pattern and domain organization have been associated with different pathological situations such as viral infectivity, tumor growth, and metastasis.
T4 496-809 Sentence denotes To obtain structural information about these biomolecules, and the modifications they may undergo during different stages of cell growth and development, a mass spectrometry-based method was developed and used to obtain unambiguous structural information on the glycosaminoglycans (GAGs) that comprise heparin/HS.
T5 810-989 Sentence denotes The method was applied to assay for the heparin substrate specificity of a newly discovered human extracellular endosulfatase, HSulf-2, which has been implicated in tumorigenesis.
T6 990-1085 Sentence denotes This new protocol incorporates 12 known heparin disaccharides, including three sets of isomers.
T7 1086-1273 Sentence denotes A unique response factor (R) is determined for each disaccharide, whereas a multiplexed and data processing method is incorporated for faster data acquisition and quantification purposes.
T8 1274-1384 Sentence denotes Proof of principle was performed by using various heparin/HS samples isolated from bovine and porcine tissues.

Glycosmos6-GlycoEpitope

Id Subject Object Predicate Lexical cue
T1 35-50 http://www.glycoepitope.jp/epitopes/EP0086 denotes heparan sulfate
T2 234-249 http://www.glycoepitope.jp/epitopes/EP0086 denotes heparan sulfate
T3 251-253 http://www.glycoepitope.jp/epitopes/EP0086 denotes HS
T4 806-808 http://www.glycoepitope.jp/epitopes/EP0086 denotes HS
T5 1332-1334 http://www.glycoepitope.jp/epitopes/EP0086 denotes HS

ICD10

Id Subject Object Predicate Lexical cue
T1 447-464 http://purl.bioontology.org/ontology/ICD10/B34.9 denotes viral infectivity

GlycoBiology-NCBITAXON

Id Subject Object Predicate Lexical cue
T1 298-318 http://purl.bioontology.org/ontology/STY/T039 denotes biological functions
T2 1162-1173 http://purl.bioontology.org/ontology/NCBITAXON/1196578 denotes multiplexed
T3 1376-1383 http://purl.bioontology.org/ontology/STY/T024 denotes tissues

GO-BP

Id Subject Object Predicate Lexical cue
T1 43-50 http://purl.obolibrary.org/obo/GO_0051923 denotes sulfate
T2 242-249 http://purl.obolibrary.org/obo/GO_0051923 denotes sulfate
T3 337-346 http://purl.obolibrary.org/obo/GO_0051923 denotes sulfation
T4 447-464 http://purl.obolibrary.org/obo/GO_0016032 denotes viral infectivity
T5 472-478 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T6 626-632 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T7 621-632 http://purl.obolibrary.org/obo/GO_0016049 denotes cell growth
T8 637-648 http://purl.obolibrary.org/obo/GO_0032502 denotes development
T9 687-696 http://purl.obolibrary.org/obo/GO_0032502 denotes developed

GO-CC

Id Subject Object Predicate Lexical cue
T1 109-122 http://purl.obolibrary.org/obo/GO_0005576 denotes extracellular
T2 908-921 http://purl.obolibrary.org/obo/GO_0005576 denotes extracellular
T3 621-625 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

UBERON-AE

Id Subject Object Predicate Lexical cue
T1 1376-1383 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissues

performance-test

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 366-378 http://purl.obolibrary.org/obo/UBERON_0000062 denotes organization
PD-UBERON-AE-B_T2 1376-1383 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissues

GlycoBiology-Motifs

Id Subject Object Predicate Lexical cue
T1 27-34 http://rdf.glycoinfo.org/glycan/G54161DR denotes heparin
T2 222-229 http://rdf.glycoinfo.org/glycan/G54161DR denotes heparin
T3 798-805 http://rdf.glycoinfo.org/glycan/G54161DR denotes heparin
T4 850-857 http://rdf.glycoinfo.org/glycan/G54161DR denotes heparin
T5 1030-1037 http://rdf.glycoinfo.org/glycan/G54161DR denotes heparin
T6 1324-1331 http://rdf.glycoinfo.org/glycan/G54161DR denotes heparin

GlycoBiology-Epitope

Id Subject Object Predicate Lexical cue
PD-GlycoEpitope-B_T1 35-50 http://www.glycoepitope.jp/epitopes/EP0086 denotes heparan sulfate
PD-GlycoEpitope-B_T2 234-249 http://www.glycoepitope.jp/epitopes/EP0086 denotes heparan sulfate

mondo_disease

Id Subject Object Predicate Lexical cue mondo_id
T1 466-471 Disease denotes tumor http://purl.obolibrary.org/obo/MONDO_0005070

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 123-128 OrganismTaxon denotes human 9606
T2 902-907 OrganismTaxon denotes human 9606
T3 1357-1363 OrganismTaxon denotes bovine 9913

Glycosmos15-GlycoEpitope

Id Subject Object Predicate Lexical cue glycoepitope_id
T1 35-50 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes heparan sulfate http://www.glycoepitope.jp/epitopes/EP0086
T2 234-249 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes heparan sulfate http://www.glycoepitope.jp/epitopes/EP0086
T3 251-253 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes HS http://www.glycoepitope.jp/epitopes/EP0086
T4 806-808 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes HS http://www.glycoepitope.jp/epitopes/EP0086
T5 1332-1334 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes HS http://www.glycoepitope.jp/epitopes/EP0086

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 109-122 Body_part denotes extracellular http://purl.obolibrary.org/obo/GO_0005576
T2 908-921 Body_part denotes extracellular http://purl.obolibrary.org/obo/GO_0005576

GlyCosmos15-HP

Id Subject Object Predicate Lexical cue hp_id
T1 466-471 Phenotype denotes tumor HP:0002664