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Glycan-Motif

Id Subject Object Predicate Lexical cue
T1 668-675 https://glytoucan.org/Structures/Glycans/G00048MO denotes Lewis b
T2 668-675 https://glytoucan.org/Structures/Glycans/G39211DH denotes Lewis b
T3 690-696 https://glytoucan.org/Structures/Glycans/G82576YO denotes fucose
T4 775-787 https://glytoucan.org/Structures/Glycans/G81533KY denotes sialic acids
T5 956-967 https://glytoucan.org/Structures/Glycans/G81533KY denotes sialic acid
T6 1220-1232 https://glytoucan.org/Structures/Glycans/G81533KY denotes sialic acids

GlyCosmos6-Glycan-Motif-Image

Id Subject Object Predicate Lexical cue image
T1 668-675 Glycan_Motif denotes Lewis b https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G39211DH|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00048MO
T3 690-696 Glycan_Motif denotes fucose https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G82576YO
T4 775-787 Glycan_Motif denotes sialic acids https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G81533KY
T5 956-967 Glycan_Motif denotes sialic acid https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G81533KY
T6 1220-1232 Glycan_Motif denotes sialic acids https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G81533KY

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-106 Sentence denotes Identification and characterization of binding properties of Helicobacter pylori by glycoconjugate arrays.
TextSentencer_T2 107-235 Sentence denotes The microaerophilic bacterium Helicobacter pylori is well established for its role in development of different gastric diseases.
TextSentencer_T3 236-360 Sentence denotes Bacterial adhesins and corresponding binding sites on the epithelial surface allow H. pylori to colonize the gastric tissue.
TextSentencer_T4 361-487 Sentence denotes In this investigation, the adhesion of H. pylori to dot blot arrays of natural glycoproteins and neoglycoproteins was studied.
TextSentencer_T5 488-590 Sentence denotes Adhesion was detected by overlay with fluorescence-labeled bacteria on immobilized (neo)glycoproteins.
TextSentencer_T6 591-717 Sentence denotes The results confirmed the interaction between the adhesin BabA and the H-1-, Lewis b-, and related fucose-containing antigens.
TextSentencer_T7 718-812 Sentence denotes In addition, H. pylori bound to terminal alpha2-3-linked sialic acids as previously described.
TextSentencer_T8 813-990 Sentence denotes The use of a sabA mutant and sialidase treatment of glycoconjugate arrays showed that the adherence of H. pylori to laminin is mediated by the sialic acid-binding adhesin, SabA.
TextSentencer_T9 991-1116 Sentence denotes The adhesion to salivary mucin MUC5B is mainly associated with the BabA adhesin and to a lesser extent with the SabA adhesin.
TextSentencer_T10 1117-1233 Sentence denotes This agrees with reports, that MUC5B carries both fucosylated blood group antigens and alpha2-3-linked sialic acids.
TextSentencer_T11 1234-1332 Sentence denotes The adhesion of H. pylori to fibronectin and lactoferrin persisted in the babA/sabA double mutant.
TextSentencer_T12 1333-1558 Sentence denotes Because binding to these molecules was abolished by denaturation rather than by deglycosylation, it was suggested to depend on the recognition of unknown receptor moieties by an additional unknown bacterial surface component.
TextSentencer_T13 1559-1765 Sentence denotes The results demonstrate that the bacterial overlay method on glycoconjugate arrays is a useful tool for exploration and the characterization of unknown adhesin specificities of H. pylori and other bacteria.
T1 0-106 Sentence denotes Identification and characterization of binding properties of Helicobacter pylori by glycoconjugate arrays.
T2 107-235 Sentence denotes The microaerophilic bacterium Helicobacter pylori is well established for its role in development of different gastric diseases.
T3 236-360 Sentence denotes Bacterial adhesins and corresponding binding sites on the epithelial surface allow H. pylori to colonize the gastric tissue.
T4 361-487 Sentence denotes In this investigation, the adhesion of H. pylori to dot blot arrays of natural glycoproteins and neoglycoproteins was studied.
T5 488-590 Sentence denotes Adhesion was detected by overlay with fluorescence-labeled bacteria on immobilized (neo)glycoproteins.
T6 591-717 Sentence denotes The results confirmed the interaction between the adhesin BabA and the H-1-, Lewis b-, and related fucose-containing antigens.
T7 718-812 Sentence denotes In addition, H. pylori bound to terminal alpha2-3-linked sialic acids as previously described.
T8 813-990 Sentence denotes The use of a sabA mutant and sialidase treatment of glycoconjugate arrays showed that the adherence of H. pylori to laminin is mediated by the sialic acid-binding adhesin, SabA.
T9 991-1116 Sentence denotes The adhesion to salivary mucin MUC5B is mainly associated with the BabA adhesin and to a lesser extent with the SabA adhesin.
T10 1117-1233 Sentence denotes This agrees with reports, that MUC5B carries both fucosylated blood group antigens and alpha2-3-linked sialic acids.
T11 1234-1332 Sentence denotes The adhesion of H. pylori to fibronectin and lactoferrin persisted in the babA/sabA double mutant.
T12 1333-1558 Sentence denotes Because binding to these molecules was abolished by denaturation rather than by deglycosylation, it was suggested to depend on the recognition of unknown receptor moieties by an additional unknown bacterial surface component.
T13 1559-1765 Sentence denotes The results demonstrate that the bacterial overlay method on glycoconjugate arrays is a useful tool for exploration and the characterization of unknown adhesin specificities of H. pylori and other bacteria.
T1 0-106 Sentence denotes Identification and characterization of binding properties of Helicobacter pylori by glycoconjugate arrays.
T2 107-235 Sentence denotes The microaerophilic bacterium Helicobacter pylori is well established for its role in development of different gastric diseases.
T3 236-360 Sentence denotes Bacterial adhesins and corresponding binding sites on the epithelial surface allow H. pylori to colonize the gastric tissue.
T4 361-487 Sentence denotes In this investigation, the adhesion of H. pylori to dot blot arrays of natural glycoproteins and neoglycoproteins was studied.
T5 488-590 Sentence denotes Adhesion was detected by overlay with fluorescence-labeled bacteria on immobilized (neo)glycoproteins.
T6 591-717 Sentence denotes The results confirmed the interaction between the adhesin BabA and the H-1-, Lewis b-, and related fucose-containing antigens.
T7 718-812 Sentence denotes In addition, H. pylori bound to terminal alpha2-3-linked sialic acids as previously described.
T8 813-990 Sentence denotes The use of a sabA mutant and sialidase treatment of glycoconjugate arrays showed that the adherence of H. pylori to laminin is mediated by the sialic acid-binding adhesin, SabA.
T9 991-1116 Sentence denotes The adhesion to salivary mucin MUC5B is mainly associated with the BabA adhesin and to a lesser extent with the SabA adhesin.
T10 1117-1233 Sentence denotes This agrees with reports, that MUC5B carries both fucosylated blood group antigens and alpha2-3-linked sialic acids.
T11 1234-1332 Sentence denotes The adhesion of H. pylori to fibronectin and lactoferrin persisted in the babA/sabA double mutant.
T12 1333-1558 Sentence denotes Because binding to these molecules was abolished by denaturation rather than by deglycosylation, it was suggested to depend on the recognition of unknown receptor moieties by an additional unknown bacterial surface component.
T13 1559-1765 Sentence denotes The results demonstrate that the bacterial overlay method on glycoconjugate arrays is a useful tool for exploration and the characterization of unknown adhesin specificities of H. pylori and other bacteria.

GlyCosmos6-Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T1 668-675 https://glytoucan.org/Structures/Glycans/G00048MO denotes Lewis b
T2 668-675 https://glytoucan.org/Structures/Glycans/G39211DH denotes Lewis b
T3 690-696 https://glytoucan.org/Structures/Glycans/G82576YO denotes fucose
T4 775-787 https://glytoucan.org/Structures/Glycans/G81533KY denotes sialic acids
T5 956-967 https://glytoucan.org/Structures/Glycans/G81533KY denotes sialic acid
T6 1220-1232 https://glytoucan.org/Structures/Glycans/G81533KY denotes sialic acids

Glycosmos6-GlycoEpitope

Id Subject Object Predicate Lexical cue
T1 668-675 http://www.glycoepitope.jp/epitopes/EP0010 denotes Lewis b

Glycosmos6-MAT

Id Subject Object Predicate Lexical cue
T1 332-340 http://purl.obolibrary.org/obo/MAT_0000526 denotes colonize
T2 1179-1184 http://purl.obolibrary.org/obo/MAT_0000083 denotes blood
T3 1179-1184 http://purl.obolibrary.org/obo/MAT_0000315 denotes blood

GlycoBiology-PACDB

Id Subject Object Predicate Lexical cue
_T1 61-80 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC049,LEC063,LEC070,LEC078,LEC107,LEC336,LEC343,LEC409,LEC419,LEC446,LEC582 denotes Helicobacter pylori
_T2 61-80 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC444 denotes Helicobacter pylori
_T3 61-80 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC362 denotes Helicobacter pylori
_T4 61-80 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC121 denotes Helicobacter pylori
_T5 137-156 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC362 denotes Helicobacter pylori
_T6 137-156 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC121 denotes Helicobacter pylori
_T7 137-156 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC049,LEC063,LEC070,LEC078,LEC107,LEC336,LEC343,LEC409,LEC419,LEC446,LEC582 denotes Helicobacter pylori
_T8 137-156 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC444 denotes Helicobacter pylori

uniprot-human

Id Subject Object Predicate Lexical cue
T1 1022-1027 http://www.uniprot.org/uniprot/Q7M4S5 denotes MUC5B
T2 1148-1153 http://www.uniprot.org/uniprot/Q7M4S5 denotes MUC5B
T3 1263-1274 http://www.uniprot.org/uniprot/Q8IVI8 denotes fibronectin
T4 1279-1290 http://www.uniprot.org/uniprot/Q9H1Z3 denotes lactoferrin

uniprot-mouse

Id Subject Object Predicate Lexical cue
T1 1263-1274 http://www.uniprot.org/uniprot/P11276 denotes fibronectin
T2 1279-1290 http://www.uniprot.org/uniprot/P08071 denotes lactoferrin

GlycoBiology-NCBITAXON

Id Subject Object Predicate Lexical cue
T1 61-73 http://purl.bioontology.org/ontology/NCBITAXON/209 denotes Helicobacter
T2 127-136 http://purl.bioontology.org/ontology/NCBITAXON/538101 denotes bacterium
T3 127-136 http://purl.bioontology.org/ontology/NCBITAXON/336400 denotes bacterium
T4 127-136 http://purl.bioontology.org/ontology/NCBITAXON/1730 denotes bacterium
T5 127-136 http://purl.bioontology.org/ontology/NCBITAXON/538072 denotes bacterium
T6 127-136 http://purl.bioontology.org/ontology/NCBITAXON/538075 denotes bacterium
T7 127-136 http://purl.bioontology.org/ontology/NCBITAXON/538076 denotes bacterium
T8 127-136 http://purl.bioontology.org/ontology/NCBITAXON/538084 denotes bacterium
T9 127-136 http://purl.bioontology.org/ontology/NCBITAXON/538085 denotes bacterium
T10 127-136 http://purl.bioontology.org/ontology/NCBITAXON/538091 denotes bacterium
T11 127-136 http://purl.bioontology.org/ontology/NCBITAXON/538097 denotes bacterium
T12 127-136 http://purl.bioontology.org/ontology/NCBITAXON/538099 denotes bacterium
T13 127-136 http://purl.bioontology.org/ontology/NCBITAXON/674166 denotes bacterium
T14 127-136 http://purl.bioontology.org/ontology/NCBITAXON/1144558 denotes bacterium
T15 127-136 http://purl.bioontology.org/ontology/NCBITAXON/1368069 denotes bacterium
T16 127-136 http://purl.bioontology.org/ontology/NCBITAXON/538107 denotes bacterium
T17 127-136 http://purl.bioontology.org/ontology/NCBITAXON/538108 denotes bacterium
T18 127-136 http://purl.bioontology.org/ontology/NCBITAXON/538113 denotes bacterium
T19 127-136 http://purl.bioontology.org/ontology/NCBITAXON/538117 denotes bacterium
T20 127-136 http://purl.bioontology.org/ontology/NCBITAXON/400048 denotes bacterium
T21 127-136 http://purl.bioontology.org/ontology/NCBITAXON/138290 denotes bacterium
T22 127-136 http://purl.bioontology.org/ontology/NCBITAXON/336405 denotes bacterium
T23 127-136 http://purl.bioontology.org/ontology/NCBITAXON/336403 denotes bacterium
T24 127-136 http://purl.bioontology.org/ontology/NCBITAXON/336404 denotes bacterium
T25 127-136 http://purl.bioontology.org/ontology/NCBITAXON/538104 denotes bacterium
T26 127-149 http://purl.bioontology.org/ontology/NCBITAXON/1054170 denotes bacterium Helicobacter
T27 137-149 http://purl.bioontology.org/ontology/NCBITAXON/209 denotes Helicobacter
T28 353-359 http://purl.bioontology.org/ontology/STY/T024 denotes tissue
T29 547-555 http://purl.bioontology.org/ontology/NCBITAXON/2 denotes bacteria
T30 547-555 http://purl.bioontology.org/ontology/NCBITAXON/629395 denotes bacteria
T31 682-689 http://purl.bioontology.org/ontology/NCBITAXON/353209 denotes related
T32 826-830 http://purl.bioontology.org/ontology/NCBITAXON/141610 denotes sabA
T33 985-989 http://purl.bioontology.org/ontology/NCBITAXON/141610 denotes SabA
T34 1103-1107 http://purl.bioontology.org/ontology/NCBITAXON/141610 denotes SabA
T35 1185-1190 http://purl.bioontology.org/ontology/STY/T096 denotes group
T36 1313-1317 http://purl.bioontology.org/ontology/NCBITAXON/141610 denotes sabA
T37 1756-1764 http://purl.bioontology.org/ontology/NCBITAXON/2 denotes bacteria
T38 1756-1764 http://purl.bioontology.org/ontology/NCBITAXON/629395 denotes bacteria

GO-BP

Id Subject Object Predicate Lexical cue
T1 193-204 http://purl.obolibrary.org/obo/GO_0032502 denotes development
T2 1167-1178 http://purl.obolibrary.org/obo/GO_0036065 denotes fucosylated

GO-MF

Id Subject Object Predicate Lexical cue
T1 39-46 http://purl.obolibrary.org/obo/GO_0070026 denotes binding
T2 273-280 http://purl.obolibrary.org/obo/GO_0070026 denotes binding
T3 968-975 http://purl.obolibrary.org/obo/GO_0070026 denotes binding
T4 1341-1348 http://purl.obolibrary.org/obo/GO_0070026 denotes binding
T5 39-46 http://purl.obolibrary.org/obo/GO_0003680 denotes binding
T6 273-280 http://purl.obolibrary.org/obo/GO_0003680 denotes binding
T7 968-975 http://purl.obolibrary.org/obo/GO_0003680 denotes binding
T8 1341-1348 http://purl.obolibrary.org/obo/GO_0003680 denotes binding
T9 39-46 http://purl.obolibrary.org/obo/GO_0017091 denotes binding
T10 273-280 http://purl.obolibrary.org/obo/GO_0017091 denotes binding
T11 968-975 http://purl.obolibrary.org/obo/GO_0017091 denotes binding
T12 1341-1348 http://purl.obolibrary.org/obo/GO_0017091 denotes binding
T13 39-46 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T14 273-280 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T15 968-975 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T16 1341-1348 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T17 956-975 http://purl.obolibrary.org/obo/GO_0033691 denotes sialic acid-binding

UBERON-AE

Id Subject Object Predicate Lexical cue
T1 332-340 http://purl.obolibrary.org/obo/UBERON_0001155 denotes colonize
T2 353-359 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissue
T3 1179-1184 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood

GlycoBiology-MAT

Id Subject Object Predicate Lexical cue
T1 127-136 http://purl.obolibrary.org/obo/MAT_0000191 denotes bacterium
T2 332-340 http://purl.obolibrary.org/obo/MAT_0000526 denotes colonize
T3 1179-1184 http://purl.obolibrary.org/obo/MAT_0000315 denotes blood
T4 1179-1184 http://purl.obolibrary.org/obo/MAT_0000083 denotes blood

GlycoBiology-Motifs

Id Subject Object Predicate Lexical cue
T1 668-673 http://rdf.glycoinfo.org/glycan/G00047MO denotes Lewis
T2 668-675 http://rdf.glycoinfo.org/glycan/G00048MO denotes Lewis b
T3 1179-1190 http://rdf.glycoinfo.org/glycan/G00066MO denotes blood group

GlycoBiology-Epitope

Id Subject Object Predicate Lexical cue
PD-GlycoEpitope-B_T1 539-546 id denotes labeled
PD-GlycoEpitope-B_T2 668-675 http://www.glycoepitope.jp/epitopes/EP0010 denotes Lewis b

performance-test

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 1179-1184 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
PD-UBERON-AE-B_T2 353-359 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissue
PD-UBERON-AE-B_T3 332-340 http://purl.obolibrary.org/obo/UBERON_0001155 denotes colonize

mondo_disease

Id Subject Object Predicate Lexical cue mondo_id
T1 218-234 Disease denotes gastric diseases http://purl.obolibrary.org/obo/MONDO_0004298

Glycan-GlyCosmos

Id Subject Object Predicate Lexical cue image
T1 668-675 Glycan denotes Lewis b https://api.glycosmos.org/wurcs2image/latest/png/binary/G00048MO

GlyCosmos-GlycoEpitope

Id Subject Object Predicate Lexical cue glycoepitope_id
T1 668-675 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes Lewis b http://www.glycoepitope.jp/epitopes/EP0010

GlyCosmos15-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 218-234 Disease denotes gastric diseases http://purl.obolibrary.org/obo/MONDO_0004298

GlyCosmos15-NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 61-80 OrganismTaxon denotes Helicobacter pylori 210
T2 137-156 OrganismTaxon denotes Helicobacter pylori 210
T3 547-555 OrganismTaxon denotes bacteria 2|629395
T5 985-989 OrganismTaxon denotes SabA 141610
T6 1103-1107 OrganismTaxon denotes SabA 141610
T7 1756-1764 OrganismTaxon denotes bacteria 2|629395

GlyCosmos15-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 353-359 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T2 1179-1184 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178

GlyCosmos15-MAT

Id Subject Object Predicate Lexical cue mat_id
T1 332-340 Body_part denotes colonize http://purl.obolibrary.org/obo/MAT_0000526
T2 1179-1184 Body_part denotes blood http://purl.obolibrary.org/obo/MAT_0000083|http://purl.obolibrary.org/obo/MAT_0000315

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-106 Sentence denotes Identification and characterization of binding properties of Helicobacter pylori by glycoconjugate arrays.
TextSentencer_T2 107-235 Sentence denotes The microaerophilic bacterium Helicobacter pylori is well established for its role in development of different gastric diseases.
TextSentencer_T3 236-360 Sentence denotes Bacterial adhesins and corresponding binding sites on the epithelial surface allow H. pylori to colonize the gastric tissue.
TextSentencer_T4 361-487 Sentence denotes In this investigation, the adhesion of H. pylori to dot blot arrays of natural glycoproteins and neoglycoproteins was studied.
TextSentencer_T5 488-590 Sentence denotes Adhesion was detected by overlay with fluorescence-labeled bacteria on immobilized (neo)glycoproteins.
TextSentencer_T6 591-717 Sentence denotes The results confirmed the interaction between the adhesin BabA and the H-1-, Lewis b-, and related fucose-containing antigens.
TextSentencer_T7 718-812 Sentence denotes In addition, H. pylori bound to terminal alpha2-3-linked sialic acids as previously described.
TextSentencer_T8 813-990 Sentence denotes The use of a sabA mutant and sialidase treatment of glycoconjugate arrays showed that the adherence of H. pylori to laminin is mediated by the sialic acid-binding adhesin, SabA.
TextSentencer_T9 991-1116 Sentence denotes The adhesion to salivary mucin MUC5B is mainly associated with the BabA adhesin and to a lesser extent with the SabA adhesin.
TextSentencer_T10 1117-1233 Sentence denotes This agrees with reports, that MUC5B carries both fucosylated blood group antigens and alpha2-3-linked sialic acids.
TextSentencer_T11 1234-1332 Sentence denotes The adhesion of H. pylori to fibronectin and lactoferrin persisted in the babA/sabA double mutant.
TextSentencer_T12 1333-1558 Sentence denotes Because binding to these molecules was abolished by denaturation rather than by deglycosylation, it was suggested to depend on the recognition of unknown receptor moieties by an additional unknown bacterial surface component.
TextSentencer_T13 1559-1765 Sentence denotes The results demonstrate that the bacterial overlay method on glycoconjugate arrays is a useful tool for exploration and the characterization of unknown adhesin specificities of H. pylori and other bacteria.
T1 0-106 Sentence denotes Identification and characterization of binding properties of Helicobacter pylori by glycoconjugate arrays.
T2 107-235 Sentence denotes The microaerophilic bacterium Helicobacter pylori is well established for its role in development of different gastric diseases.
T3 236-360 Sentence denotes Bacterial adhesins and corresponding binding sites on the epithelial surface allow H. pylori to colonize the gastric tissue.
T4 361-487 Sentence denotes In this investigation, the adhesion of H. pylori to dot blot arrays of natural glycoproteins and neoglycoproteins was studied.
T5 488-590 Sentence denotes Adhesion was detected by overlay with fluorescence-labeled bacteria on immobilized (neo)glycoproteins.
T6 591-717 Sentence denotes The results confirmed the interaction between the adhesin BabA and the H-1-, Lewis b-, and related fucose-containing antigens.
T7 718-812 Sentence denotes In addition, H. pylori bound to terminal alpha2-3-linked sialic acids as previously described.
T8 813-990 Sentence denotes The use of a sabA mutant and sialidase treatment of glycoconjugate arrays showed that the adherence of H. pylori to laminin is mediated by the sialic acid-binding adhesin, SabA.
T9 991-1116 Sentence denotes The adhesion to salivary mucin MUC5B is mainly associated with the BabA adhesin and to a lesser extent with the SabA adhesin.
T10 1117-1233 Sentence denotes This agrees with reports, that MUC5B carries both fucosylated blood group antigens and alpha2-3-linked sialic acids.
T11 1234-1332 Sentence denotes The adhesion of H. pylori to fibronectin and lactoferrin persisted in the babA/sabA double mutant.
T12 1333-1558 Sentence denotes Because binding to these molecules was abolished by denaturation rather than by deglycosylation, it was suggested to depend on the recognition of unknown receptor moieties by an additional unknown bacterial surface component.
T13 1559-1765 Sentence denotes The results demonstrate that the bacterial overlay method on glycoconjugate arrays is a useful tool for exploration and the characterization of unknown adhesin specificities of H. pylori and other bacteria.
T1 0-106 Sentence denotes Identification and characterization of binding properties of Helicobacter pylori by glycoconjugate arrays.
T2 107-235 Sentence denotes The microaerophilic bacterium Helicobacter pylori is well established for its role in development of different gastric diseases.
T3 236-360 Sentence denotes Bacterial adhesins and corresponding binding sites on the epithelial surface allow H. pylori to colonize the gastric tissue.
T4 361-487 Sentence denotes In this investigation, the adhesion of H. pylori to dot blot arrays of natural glycoproteins and neoglycoproteins was studied.
T5 488-590 Sentence denotes Adhesion was detected by overlay with fluorescence-labeled bacteria on immobilized (neo)glycoproteins.
T6 591-717 Sentence denotes The results confirmed the interaction between the adhesin BabA and the H-1-, Lewis b-, and related fucose-containing antigens.
T7 718-812 Sentence denotes In addition, H. pylori bound to terminal alpha2-3-linked sialic acids as previously described.
T8 813-990 Sentence denotes The use of a sabA mutant and sialidase treatment of glycoconjugate arrays showed that the adherence of H. pylori to laminin is mediated by the sialic acid-binding adhesin, SabA.
T9 991-1116 Sentence denotes The adhesion to salivary mucin MUC5B is mainly associated with the BabA adhesin and to a lesser extent with the SabA adhesin.
T10 1117-1233 Sentence denotes This agrees with reports, that MUC5B carries both fucosylated blood group antigens and alpha2-3-linked sialic acids.
T11 1234-1332 Sentence denotes The adhesion of H. pylori to fibronectin and lactoferrin persisted in the babA/sabA double mutant.
T12 1333-1558 Sentence denotes Because binding to these molecules was abolished by denaturation rather than by deglycosylation, it was suggested to depend on the recognition of unknown receptor moieties by an additional unknown bacterial surface component.
T13 1559-1765 Sentence denotes The results demonstrate that the bacterial overlay method on glycoconjugate arrays is a useful tool for exploration and the characterization of unknown adhesin specificities of H. pylori and other bacteria.

GlyCosmos15-Sentences

Id Subject Object Predicate Lexical cue
T1 0-106 Sentence denotes Identification and characterization of binding properties of Helicobacter pylori by glycoconjugate arrays.
T2 107-235 Sentence denotes The microaerophilic bacterium Helicobacter pylori is well established for its role in development of different gastric diseases.
T3 236-360 Sentence denotes Bacterial adhesins and corresponding binding sites on the epithelial surface allow H. pylori to colonize the gastric tissue.
T4 361-487 Sentence denotes In this investigation, the adhesion of H. pylori to dot blot arrays of natural glycoproteins and neoglycoproteins was studied.
T5 488-590 Sentence denotes Adhesion was detected by overlay with fluorescence-labeled bacteria on immobilized (neo)glycoproteins.
T6 591-717 Sentence denotes The results confirmed the interaction between the adhesin BabA and the H-1-, Lewis b-, and related fucose-containing antigens.
T7 718-812 Sentence denotes In addition, H. pylori bound to terminal alpha2-3-linked sialic acids as previously described.
T8 813-990 Sentence denotes The use of a sabA mutant and sialidase treatment of glycoconjugate arrays showed that the adherence of H. pylori to laminin is mediated by the sialic acid-binding adhesin, SabA.
T9 991-1116 Sentence denotes The adhesion to salivary mucin MUC5B is mainly associated with the BabA adhesin and to a lesser extent with the SabA adhesin.
T10 1117-1233 Sentence denotes This agrees with reports, that MUC5B carries both fucosylated blood group antigens and alpha2-3-linked sialic acids.
T11 1234-1332 Sentence denotes The adhesion of H. pylori to fibronectin and lactoferrin persisted in the babA/sabA double mutant.
T12 1333-1558 Sentence denotes Because binding to these molecules was abolished by denaturation rather than by deglycosylation, it was suggested to depend on the recognition of unknown receptor moieties by an additional unknown bacterial surface component.
T13 1559-1765 Sentence denotes The results demonstrate that the bacterial overlay method on glycoconjugate arrays is a useful tool for exploration and the characterization of unknown adhesin specificities of H. pylori and other bacteria.

GlyCosmos15-Glycan

Id Subject Object Predicate Lexical cue image
T1 668-675 Glycan denotes Lewis b https://api.glycosmos.org/wurcs2image/latest/png/binary/G00048MO

GlyCosmos15-GlycoEpitope

Id Subject Object Predicate Lexical cue glycoepitope_id
T1 668-675 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes Lewis b http://www.glycoepitope.jp/epitopes/EP0010

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 61-80 OrganismTaxon denotes Helicobacter pylori 210
T2 137-156 OrganismTaxon denotes Helicobacter pylori 210
T3 547-555 OrganismTaxon denotes bacteria 2|629395
T5 985-989 OrganismTaxon denotes SabA 141610
T6 1103-1107 OrganismTaxon denotes SabA 141610
T7 1756-1764 OrganismTaxon denotes bacteria 2|629395

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 353-359 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T2 1179-1184 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178

Anatomy-MAT

Id Subject Object Predicate Lexical cue mat_id
T1 332-340 Body_part denotes colonize http://purl.obolibrary.org/obo/MAT_0000526
T2 1179-1184 Body_part denotes blood http://purl.obolibrary.org/obo/MAT_0000083|http://purl.obolibrary.org/obo/MAT_0000315