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PubMed_Structured_Abstracts

Id Subject Object Predicate Lexical cue
T2 0-635 METHODS denotes Rabbit corneal myofibroblasts were identified by immunodetection of alpha-smooth muscle (alpha-SM)-actin. MT1-MMP, MMP-2, MMP-9, and tissue inhibitor of matrix metalloproteinase (TIMP)-2 were detected by immunofluorescence. Cells were treated with 100 nM cPAF, with or without the PAF antagonist BN 50730 or the furin inhibitor nona-D-arg-NH(2). Gene-expression levels for furin, urokinase plasminogen activator, MMP-2, MMP-9, MT1-MMP, and TIMP-2 were determined by real-time PCR. Protein expression was assessed by Western blot. MMP-2 and -9 activity was determined by gelatin zymography. Active MT1-MMP levels were measured by ELISA.

c_corpus

Id Subject Object Predicate Lexical cue
T113 0-6 813859 denotes Rabbit
T112 0-6 D011817 denotes Rabbit
T114 0-6 9986 denotes Rabbit
T115 68-73 CHEBI:30216 denotes alpha
T116 74-87 UBERON:0001135 denotes smooth muscle
T117 74-87 UBERON:0000953 denotes smooth muscle
T120 89-94 CHEBI:30216 denotes alpha
T121 99-104 P53491 denotes actin
T122 99-104 P45520 denotes actin
T123 99-104 O00937 denotes actin
T124 99-104 Q05214 denotes actin
T125 99-104 P13363 denotes actin
T126 99-104 Q39596 denotes actin
T127 99-104 P30161 denotes actin
T128 99-104 P53476 denotes actin
T129 99-104 P51775 denotes actin
T130 99-104 P60011 denotes actin
T131 99-104 Q9P4D1 denotes actin
T132 99-104 P50138 denotes actin
T133 99-104 O65314 denotes actin
T134 99-104 P26183 denotes actin
T135 99-104 Q75D00 denotes actin
T136 99-104 P53502 denotes actin
T137 99-104 P11426 denotes actin
T138 99-104 P80709 denotes actin
T139 99-104 Q8X119 denotes actin
T140 99-104 Q6TCF2 denotes actin
T141 99-104 Q99023 denotes actin
T142 99-104 A5DQP9 denotes actin
T143 99-104 P60009 denotes actin
T144 99-104 O65315 denotes actin
T145 99-104 P26182 denotes actin
T146 99-104 Q9UVF3 denotes actin
T147 99-104 Q2U7A3 denotes actin
T148 99-104 Q92192 denotes actin
T149 99-104 Q9UVZ8 denotes actin
T150 99-104 P53689 denotes actin
T151 99-104 P68555 denotes actin
T152 99-104 P53455 denotes actin
T153 99-104 O13419 denotes actin
T154 99-104 P60010 denotes actin
T155 99-104 Q39758 denotes actin
T156 99-104 P81085 denotes actin
T157 99-104 P48465 denotes actin
T158 99-104 P78711 denotes actin
T159 99-104 P17128 denotes actin
T160 99-104 P91754 denotes actin
T161 99-104 Q24733 denotes actin
T162 99-104 P14235 denotes actin
T163 99-104 Q92193 denotes actin
T164 99-104 Q11212 denotes actin
T165 99-104 P45521 denotes actin
T166 99-104 P53477 denotes actin
T167 99-104 P53499 denotes actin
T168 99-104 P24902 denotes actin
T169 99-104 Q8SWN8 denotes actin
T170 99-104 O17320 denotes actin
T171 99-104 P10365 denotes actin
T173 99-104 O16808 denotes actin
T174 99-104 P53498 denotes actin
T175 99-104 Q9UVX4 denotes actin
T176 99-104 O81221 denotes actin
T177 99-104 P20904 denotes actin
T178 99-104 O65316 denotes actin
T179 99-104 O74258 denotes actin
T180 99-104 P53500 denotes actin
T181 99-104 P10989 denotes actin
T182 99-104 P90689 denotes actin
T172 99-104 D000199 denotes actin
T205 106-109 CVCL_2501 denotes MT1
T190 106-109 GO:0047152 denotes MT1
T199 106-109 GO:0043791 denotes MT1
T208 106-109 GO:0043834 denotes MT1
T224 106-113 Q9XT90 denotes MT1-MMP
T225 106-113 P50281 denotes MT1-MMP
T226 106-113 Q9GLE4 denotes MT1-MMP
T227 106-113 PR:000010474 denotes MT1-MMP
T228 106-113 Q10739 denotes MT1-MMP
T229 106-113 Q95220 denotes MT1-MMP
T231 106-113 P53690 denotes MT1-MMP
T230 106-113 D053511 denotes MT1-MMP
T234 110-113 GO:0004235 denotes MMP
T237 115-118 CHEBI:340824 denotes MMP
T240 115-118 CHEBI:59761 denotes MMP
T241 115-120 PR:P08253 denotes MMP-2
T242 115-120 Q9GLE5 denotes MMP-2
T243 115-120 P08253 denotes MMP-2
T244 115-120 Q90611 denotes MMP-2
T246 115-120 PR:Q8MPP3 denotes MMP-2
T247 115-120 P33436 denotes MMP-2
T248 115-120 PR:Q90611 denotes MMP-2
T249 115-120 PR:P33436 denotes MMP-2
T250 115-120 PR:000010479 denotes MMP-2
T251 115-120 PR:P33434 denotes MMP-2
T252 115-120 P33434 denotes MMP-2
T253 115-120 P50757 denotes MMP-2
T245 115-120 GO:0004228 denotes MMP-2
T254 119-125 PR:O04529 denotes 2, MMP
T255 122-125 CHEBI:340824 denotes MMP
T258 122-125 CHEBI:59761 denotes MMP
T259 122-127 PR:P50282 denotes MMP-9
T260 122-127 PR:P14780 denotes MMP-9
T261 122-127 P14780 denotes MMP-9
T262 122-127 PR:P41245 denotes MMP-9
T263 122-127 P41246 denotes MMP-9
T264 122-127 P41245 denotes MMP-9
T265 122-127 PR:P52176 denotes MMP-9
T266 122-127 P50282 denotes MMP-9
T268 122-127 PR:000010491 denotes MMP-9
T269 122-127 P52176 denotes MMP-9
T270 122-127 O18733 denotes MMP-9
T267 122-127 GO:0004229 denotes MMP-9
T271 133-139 UBERON:0000479 denotes tissue
T272 140-149 CHEBI:35222 denotes inhibitor
T273 153-159 UBERON:0027368 denotes matrix
T278 179-186 PR:P16035 denotes TIMP)-2
T279 179-186 PR:000016353 denotes TIMP)-2
T280 179-186 O42146 denotes TIMP)-2
T281 179-186 Q9TRZ7 denotes TIMP)-2
T282 179-186 Q9TTY1 denotes TIMP)-2
T283 179-186 Q60453 denotes TIMP)-2
T284 179-186 P16035 denotes TIMP)-2
T286 179-186 P25785 denotes TIMP)-2
T287 179-186 P16368 denotes TIMP)-2
T288 179-186 O77717 denotes TIMP)-2
T289 179-186 PR:P25785 denotes TIMP)-2
T290 179-186 P30121 denotes TIMP)-2
T291 179-186 Q9WUC6 denotes TIMP)-2
T292 179-186 PR:P30121 denotes TIMP)-2
T293 179-186 PR:O42146 denotes TIMP)-2
T285 179-186 D019716 denotes TIMP)-2
T294 255-259 C083283 denotes cPAF
T295 255-259 C083283 denotes cPAF
T296 281-284 PR:Q6RIA2 denotes PAF
T297 281-284 PR:Q15004 denotes PAF
T300 281-284 PR:000012225 denotes PAF
T302 281-284 PR:Q9CQX4 denotes PAF
T301 281-284 CVCL_XY57 denotes PAF
T303 281-295 CHEBI:134182 denotes PAF antagonist
T305 296-304 C066686 denotes BN 50730
T306 296-304 C066686 denotes BN 50730
T307 312-317 P09958 denotes furin
T308 312-317 P23188 denotes furin
T309 312-317 PR:000003137 denotes furin
T311 312-317 PR:P09958 denotes furin
T312 312-317 Q28193 denotes furin
T313 312-317 PR:P23188 denotes furin
T314 312-317 P23377 denotes furin
T315 312-317 PR:P23377 denotes furin
T310 312-317 D045683 denotes furin
T316 318-327 CHEBI:35222 denotes inhibitor
T317 328-332 PR:Q04047 denotes nona
T318 333-338 CHEBI:32693 denotes D-arg
T319 333-338 CHEBI:32691 denotes D-arg
T320 333-338 CHEBI:29953 denotes D-arg
T322 335-338 PR:000013890 denotes arg
T324 335-338 PR:P42684 denotes arg
T325 335-338 PR:Q9P2R6 denotes arg
T327 335-338 PR:Q4JIM5 denotes arg
T331 335-338 PR:000003583 denotes arg
T321 335-338 SO:0001451 denotes arg
T332 335-343 C069339 denotes arg-NH(2
T333 335-343 C069339 denotes arg-NH(2
T341 346-361 GO:0010467 denotes Gene-expression
T342 373-378 P09958 denotes furin
T343 373-378 P23188 denotes furin
T344 373-378 PR:000003137 denotes furin
T346 373-378 PR:P09958 denotes furin
T347 373-378 Q28193 denotes furin
T348 373-378 PR:P23188 denotes furin
T349 373-378 P23377 denotes furin
T350 373-378 PR:P23377 denotes furin
T345 373-378 D045683 denotes furin
T351 380-389 D014568 denotes urokinase
T352 380-411 GO:0008243 denotes urokinase plasminogen activator
T371 390-411 P17811 denotes plasminogen activator
T372 390-411 D010960 denotes plasminogen activator
T373 413-416 CHEBI:340824 denotes MMP
T376 413-416 CHEBI:59761 denotes MMP
T377 413-418 PR:P08253 denotes MMP-2
T378 413-418 Q9GLE5 denotes MMP-2
T379 413-418 P08253 denotes MMP-2
T380 413-418 Q90611 denotes MMP-2
T382 413-418 PR:Q8MPP3 denotes MMP-2
T383 413-418 P33436 denotes MMP-2
T384 413-418 PR:Q90611 denotes MMP-2
T385 413-418 PR:P33436 denotes MMP-2
T386 413-418 PR:000010479 denotes MMP-2
T387 413-418 PR:P33434 denotes MMP-2
T388 413-418 P33434 denotes MMP-2
T389 413-418 P50757 denotes MMP-2
T381 413-418 GO:0004228 denotes MMP-2
T390 417-423 PR:O04529 denotes 2, MMP
T391 420-423 CHEBI:340824 denotes MMP
T394 420-423 CHEBI:59761 denotes MMP
T395 420-425 PR:P50282 denotes MMP-9
T396 420-425 PR:P14780 denotes MMP-9
T397 420-425 P14780 denotes MMP-9
T398 420-425 PR:P41245 denotes MMP-9
T399 420-425 P41246 denotes MMP-9
T400 420-425 P41245 denotes MMP-9
T401 420-425 PR:P52176 denotes MMP-9
T402 420-425 P50282 denotes MMP-9
T404 420-425 PR:000010491 denotes MMP-9
T405 420-425 P52176 denotes MMP-9
T406 420-425 O18733 denotes MMP-9
T403 420-425 GO:0004229 denotes MMP-9
T429 427-430 CVCL_2501 denotes MT1
T414 427-430 GO:0047152 denotes MT1
T423 427-430 GO:0043791 denotes MT1
T432 427-430 GO:0043834 denotes MT1
T448 427-434 Q9XT90 denotes MT1-MMP
T449 427-434 P50281 denotes MT1-MMP
T450 427-434 Q9GLE4 denotes MT1-MMP
T451 427-434 PR:000010474 denotes MT1-MMP
T452 427-434 Q10739 denotes MT1-MMP
T453 427-434 Q95220 denotes MT1-MMP
T455 427-434 P53690 denotes MT1-MMP
T454 427-434 D053511 denotes MT1-MMP
T458 431-434 GO:0004235 denotes MMP
T465 440-446 PR:P16035 denotes TIMP-2
T466 440-446 PR:000016353 denotes TIMP-2
T467 440-446 O42146 denotes TIMP-2
T468 440-446 Q9TRZ7 denotes TIMP-2
T469 440-446 Q9TTY1 denotes TIMP-2
T470 440-446 Q60453 denotes TIMP-2
T471 440-446 P16035 denotes TIMP-2
T473 440-446 P25785 denotes TIMP-2
T474 440-446 P16368 denotes TIMP-2
T475 440-446 O77717 denotes TIMP-2
T476 440-446 PR:P25785 denotes TIMP-2
T477 440-446 P30121 denotes TIMP-2
T478 440-446 Q9WUC6 denotes TIMP-2
T479 440-446 PR:P30121 denotes TIMP-2
T480 440-446 PR:O42146 denotes TIMP-2
T472 440-446 D019716 denotes TIMP-2
T481 476-479 Q41249 denotes PCR
T482 476-479 O66148 denotes PCR
T483 476-479 Q59987 denotes PCR
T484 476-479 Q01289 denotes PCR
T485 476-479 O80333 denotes PCR
T486 476-479 P15904 denotes PCR
T487 476-479 Q9SDT1 denotes PCR
T488 476-479 Q39617 denotes PCR
T489 481-488 CHEBI:16541 denotes Protein
T490 530-533 CHEBI:340824 denotes MMP
T493 530-533 CHEBI:59761 denotes MMP
T494 530-535 PR:P08253 denotes MMP-2
T495 530-535 Q9GLE5 denotes MMP-2
T496 530-535 P08253 denotes MMP-2
T497 530-535 Q90611 denotes MMP-2
T499 530-535 PR:Q8MPP3 denotes MMP-2
T500 530-535 P33436 denotes MMP-2
T501 530-535 PR:Q90611 denotes MMP-2
T502 530-535 PR:P33436 denotes MMP-2
T503 530-535 PR:000010479 denotes MMP-2
T504 530-535 PR:P33434 denotes MMP-2
T505 530-535 P33434 denotes MMP-2
T506 530-535 P50757 denotes MMP-2
T498 530-535 GO:0004228 denotes MMP-2
T507 570-577 4716 denotes gelatin
T508 570-577 D005780 denotes gelatin
T509 570-577 CHEBI:5291 denotes gelatin
T532 597-600 CVCL_2501 denotes MT1
T517 597-600 GO:0047152 denotes MT1
T526 597-600 GO:0043791 denotes MT1
T535 597-600 GO:0043834 denotes MT1
T551 597-604 Q9XT90 denotes MT1-MMP
T552 597-604 P50281 denotes MT1-MMP
T553 597-604 Q9GLE4 denotes MT1-MMP
T554 597-604 PR:000010474 denotes MT1-MMP
T555 597-604 Q10739 denotes MT1-MMP
T556 597-604 Q95220 denotes MT1-MMP
T558 597-604 P53690 denotes MT1-MMP
T557 597-604 D053511 denotes MT1-MMP
T561 601-604 GO:0004235 denotes MMP

UseCases_ArguminSci_Discourse

Id Subject Object Predicate Lexical cue
T4 0-105 DRI_Background denotes Rabbit corneal myofibroblasts were identified by immunodetection of alpha-smooth muscle (alpha-SM)-actin.
T5 106-223 DRI_Background denotes MT1-MMP, MMP-2, MMP-9, and tissue inhibitor of matrix metalloproteinase (TIMP)-2 were detected by immunofluorescence.
T6 224-345 DRI_Approach denotes Cells were treated with 100 nM cPAF, with or without the PAF antagonist BN 50730 or the furin inhibitor nona-D-arg-NH(2).
T7 346-480 DRI_Background denotes Gene-expression levels for furin, urokinase plasminogen activator, MMP-2, MMP-9, MT1-MMP, and TIMP-2 were determined by real-time PCR.
T8 481-529 DRI_Background denotes Protein expression was assessed by Western blot.
T9 530-589 DRI_Unspecified denotes MMP-2 and -9 activity was determined by gelatin zymography.
T10 590-635 DRI_Background denotes Active MT1-MMP levels were measured by ELISA.