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PubMed:15604092 JSONTXT

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Glycan-Motif

Id Subject Object Predicate Lexical cue
T1 1025-1034 https://glytoucan.org/Structures/Glycans/G65889KE denotes galactose
T2 1025-1034 https://glytoucan.org/Structures/Glycans/G68158BT denotes galactose
T3 1072-1091 https://glytoucan.org/Structures/Glycans/G00055MO denotes N-acetyllactosamine
T4 1193-1200 https://glytoucan.org/Structures/Glycans/G70323CJ denotes mannose

GlyCosmos6-Glycan-Motif-Image

Id Subject Object Predicate Lexical cue image
T1 1025-1034 Glycan_Motif denotes galactose https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G68158BT|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G65889KE
T3 1072-1091 Glycan_Motif denotes N-acetyllactosamine https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00055MO
T4 1193-1200 Glycan_Motif denotes mannose https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G70323CJ

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-146 Sentence denotes Analysis of N-linked glycans of porcine zona pellucida glycoprotein ZPA by MALDI-TOF MS: a contribution to understanding zona pellucida structure.
TextSentencer_T2 147-300 Sentence denotes The mammalian oocyte is encased by a transparent extracellular matrix, the zona pellucida (ZP), which consists of three glycoproteins, ZPA, ZPB, and ZPC.
TextSentencer_T3 301-434 Sentence denotes The glycan structures of the porcine ZP and the complete N-glycosylation pattern of the ZPB/ZPC oligomer has been recently described.
TextSentencer_T4 435-612 Sentence denotes Here we report the N-glycan pattern and N-glycosylation sites of the porcine ZP glycoprotein ZPA of an immature oocyte population as determined by a mass spectrometric approach.
TextSentencer_T5 613-930 Sentence denotes In-gel deglycosylation of the electrophoretically separated ZPA protein and comparison of the pattern obtained from the native, the desialylated and the endo-beta-galactosidase-treated glycoprotein allowed the assignment of the glycan structures by MALDI-TOF MS by considering the reported oligosaccharide structures.
TextSentencer_T6 931-1044 Sentence denotes The major N-glycans are neutral biantennary complex structures containing one or two terminal galactose residues.
TextSentencer_T7 1045-1147 Sentence denotes Complex N-glycans carrying N-acetyllactosamine repeats are minor components and are mostly sialylated.
TextSentencer_T8 1148-1246 Sentence denotes A significant signal corresponding to a high-mannose type chain appeared in the three glycan maps.
TextSentencer_T9 1247-1313 Sentence denotes MS/MS analysis confirmed its identity as a pentamannosyl N-glycan.
TextSentencer_T10 1314-1611 Sentence denotes By the combination of tryptic digestion of the endo-beta-galactosidase-treated ZP glycoprotein mixture and in-gel digestion of ZPA with lectin affinity chromatography and reverse-phase HPLC, five of six N-glycosylation sites at Asn(84/93), Asn268, Asn316, Asn323, and Asn530 were identified by MS.
TextSentencer_T11 1612-1859 Sentence denotes Only one site was found to be glycosylated in the N-terminal tryptic glycopeptide with Asn(84/93.) N-glycosidase F treatment of the isolated glycopeptides and MS analysis resulted in the identification of the corresponding deglycosylated peptides.
T1 0-146 Sentence denotes Analysis of N-linked glycans of porcine zona pellucida glycoprotein ZPA by MALDI-TOF MS: a contribution to understanding zona pellucida structure.
T2 147-300 Sentence denotes The mammalian oocyte is encased by a transparent extracellular matrix, the zona pellucida (ZP), which consists of three glycoproteins, ZPA, ZPB, and ZPC.
T3 301-434 Sentence denotes The glycan structures of the porcine ZP and the complete N-glycosylation pattern of the ZPB/ZPC oligomer has been recently described.
T4 435-612 Sentence denotes Here we report the N-glycan pattern and N-glycosylation sites of the porcine ZP glycoprotein ZPA of an immature oocyte population as determined by a mass spectrometric approach.
T5 613-930 Sentence denotes In-gel deglycosylation of the electrophoretically separated ZPA protein and comparison of the pattern obtained from the native, the desialylated and the endo-beta-galactosidase-treated glycoprotein allowed the assignment of the glycan structures by MALDI-TOF MS by considering the reported oligosaccharide structures.
T6 931-1044 Sentence denotes The major N-glycans are neutral biantennary complex structures containing one or two terminal galactose residues.
T7 1045-1147 Sentence denotes Complex N-glycans carrying N-acetyllactosamine repeats are minor components and are mostly sialylated.
T8 1148-1246 Sentence denotes A significant signal corresponding to a high-mannose type chain appeared in the three glycan maps.
T9 1247-1313 Sentence denotes MS/MS analysis confirmed its identity as a pentamannosyl N-glycan.
T10 1314-1611 Sentence denotes By the combination of tryptic digestion of the endo-beta-galactosidase-treated ZP glycoprotein mixture and in-gel digestion of ZPA with lectin affinity chromatography and reverse-phase HPLC, five of six N-glycosylation sites at Asn(84/93), Asn268, Asn316, Asn323, and Asn530 were identified by MS.
T11 1612-1859 Sentence denotes Only one site was found to be glycosylated in the N-terminal tryptic glycopeptide with Asn(84/93.) N-glycosidase F treatment of the isolated glycopeptides and MS analysis resulted in the identification of the corresponding deglycosylated peptides.
T1 0-146 Sentence denotes Analysis of N-linked glycans of porcine zona pellucida glycoprotein ZPA by MALDI-TOF MS: a contribution to understanding zona pellucida structure.
T2 147-300 Sentence denotes The mammalian oocyte is encased by a transparent extracellular matrix, the zona pellucida (ZP), which consists of three glycoproteins, ZPA, ZPB, and ZPC.
T3 301-434 Sentence denotes The glycan structures of the porcine ZP and the complete N-glycosylation pattern of the ZPB/ZPC oligomer has been recently described.
T4 435-612 Sentence denotes Here we report the N-glycan pattern and N-glycosylation sites of the porcine ZP glycoprotein ZPA of an immature oocyte population as determined by a mass spectrometric approach.
T5 613-930 Sentence denotes In-gel deglycosylation of the electrophoretically separated ZPA protein and comparison of the pattern obtained from the native, the desialylated and the endo-beta-galactosidase-treated glycoprotein allowed the assignment of the glycan structures by MALDI-TOF MS by considering the reported oligosaccharide structures.
T6 931-1044 Sentence denotes The major N-glycans are neutral biantennary complex structures containing one or two terminal galactose residues.
T7 1045-1147 Sentence denotes Complex N-glycans carrying N-acetyllactosamine repeats are minor components and are mostly sialylated.
T8 1148-1246 Sentence denotes A significant signal corresponding to a high-mannose type chain appeared in the three glycan maps.
T9 1247-1313 Sentence denotes MS/MS analysis confirmed its identity as a pentamannosyl N-glycan.
T10 1314-1611 Sentence denotes By the combination of tryptic digestion of the endo-beta-galactosidase-treated ZP glycoprotein mixture and in-gel digestion of ZPA with lectin affinity chromatography and reverse-phase HPLC, five of six N-glycosylation sites at Asn(84/93), Asn268, Asn316, Asn323, and Asn530 were identified by MS.
T11 1612-1859 Sentence denotes Only one site was found to be glycosylated in the N-terminal tryptic glycopeptide with Asn(84/93.) N-glycosidase F treatment of the isolated glycopeptides and MS analysis resulted in the identification of the corresponding deglycosylated peptides.

GlyCosmos6-Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T1 1025-1034 https://glytoucan.org/Structures/Glycans/G65889KE denotes galactose
T2 1025-1034 https://glytoucan.org/Structures/Glycans/G68158BT denotes galactose
T3 1072-1091 https://glytoucan.org/Structures/Glycans/G00055MO denotes N-acetyllactosamine
T4 1193-1200 https://glytoucan.org/Structures/Glycans/G70323CJ denotes mannose

uniprot-human

Id Subject Object Predicate Lexical cue
T1 68-71 http://www.uniprot.org/uniprot/Q05996 denotes ZPA
T2 282-285 http://www.uniprot.org/uniprot/Q05996 denotes ZPA
T3 528-531 http://www.uniprot.org/uniprot/Q05996 denotes ZPA
T4 673-676 http://www.uniprot.org/uniprot/Q05996 denotes ZPA
T5 1441-1444 http://www.uniprot.org/uniprot/Q05996 denotes ZPA
T6 85-87 http://www.uniprot.org/uniprot/Q99707 denotes MS
T7 872-874 http://www.uniprot.org/uniprot/Q99707 denotes MS
T8 1247-1249 http://www.uniprot.org/uniprot/Q99707 denotes MS
T9 1250-1252 http://www.uniprot.org/uniprot/Q99707 denotes MS
T10 1608-1610 http://www.uniprot.org/uniprot/Q99707 denotes MS
T11 1771-1773 http://www.uniprot.org/uniprot/Q99707 denotes MS
T12 287-290 http://www.uniprot.org/uniprot/Q12836 denotes ZPB
T13 389-392 http://www.uniprot.org/uniprot/Q12836 denotes ZPB
T14 296-299 http://www.uniprot.org/uniprot/P21754 denotes ZPC
T15 393-396 http://www.uniprot.org/uniprot/P21754 denotes ZPC
T16 771-789 http://www.uniprot.org/uniprot/P16278 denotes beta-galactosidase
T17 1366-1384 http://www.uniprot.org/uniprot/P16278 denotes beta-galactosidase

uniprot-mouse

Id Subject Object Predicate Lexical cue
T1 85-87 http://www.uniprot.org/uniprot/A6H5Y3 denotes MS
T2 872-874 http://www.uniprot.org/uniprot/A6H5Y3 denotes MS
T3 1247-1249 http://www.uniprot.org/uniprot/A6H5Y3 denotes MS
T4 1250-1252 http://www.uniprot.org/uniprot/A6H5Y3 denotes MS
T5 1608-1610 http://www.uniprot.org/uniprot/A6H5Y3 denotes MS
T6 1771-1773 http://www.uniprot.org/uniprot/A6H5Y3 denotes MS
T7 771-789 http://www.uniprot.org/uniprot/P23780 denotes beta-galactosidase
T8 1366-1384 http://www.uniprot.org/uniprot/P23780 denotes beta-galactosidase
T9 1542-1545 http://www.uniprot.org/uniprot/Q61024 denotes Asn
T10 1699-1702 http://www.uniprot.org/uniprot/Q61024 denotes Asn

GlycoBiology-NCBITAXON

Id Subject Object Predicate Lexical cue
T1 643-662 http://purl.bioontology.org/ontology/NCBITAXON/8004 denotes electrophoretically
T2 771-775 http://purl.bioontology.org/ontology/NCBITAXON/158455 denotes beta
T3 771-775 http://purl.bioontology.org/ontology/NCBITAXON/3554 denotes beta
T4 1366-1370 http://purl.bioontology.org/ontology/NCBITAXON/158455 denotes beta
T5 1366-1370 http://purl.bioontology.org/ontology/NCBITAXON/3554 denotes beta

GO-BP

Id Subject Object Predicate Lexical cue
T1 360-373 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T2 477-490 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T3 1519-1532 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T4 1642-1654 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylated
T5 1136-1146 http://purl.obolibrary.org/obo/GO_0097503 denotes sialylated
T6 1162-1168 http://purl.obolibrary.org/obo/GO_0023052 denotes signal
T7 1344-1353 http://purl.obolibrary.org/obo/GO_0007586 denotes digestion
T8 1428-1437 http://purl.obolibrary.org/obo/GO_0007586 denotes digestion

GO-MF

Id Subject Object Predicate Lexical cue
T1 121-145 http://purl.obolibrary.org/obo/GO_0035804 denotes zona pellucida structure

GO-CC

Id Subject Object Predicate Lexical cue
T1 196-209 http://purl.obolibrary.org/obo/GO_0005576 denotes extracellular
T2 196-216 http://purl.obolibrary.org/obo/GO_0031012 denotes extracellular matrix

UBERON-AE

Id Subject Object Predicate Lexical cue
T1 40-54 http://purl.obolibrary.org/obo/UBERON_0000086 denotes zona pellucida
T2 121-135 http://purl.obolibrary.org/obo/UBERON_0000086 denotes zona pellucida
T3 222-236 http://purl.obolibrary.org/obo/UBERON_0000086 denotes zona pellucida

GlycoBiology-Motifs

Id Subject Object Predicate Lexical cue
T1 454-462 http://rdf.glycoinfo.org/glycan/G00027MO denotes N-glycan
T2 1304-1312 http://rdf.glycoinfo.org/glycan/G00027MO denotes N-glycan
T3 1188-1200 http://rdf.glycoinfo.org/glycan/G00028MO denotes high-mannose

performance-test

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 40-54 http://purl.obolibrary.org/obo/UBERON_0000086 denotes zona pellucida
PD-UBERON-AE-B_T2 121-135 http://purl.obolibrary.org/obo/UBERON_0000086 denotes zona pellucida
PD-UBERON-AE-B_T3 222-236 http://purl.obolibrary.org/obo/UBERON_0000086 denotes zona pellucida

Lectin-Jamboree

Id Subject Object Predicate Lexical cue
T1 1450-1456 lectin denotes lectin

Lectin-Jamboree-Sentence

Id Subject Object Predicate Lexical cue
T1 0-146 Sentence denotes Analysis of N-linked glycans of porcine zona pellucida glycoprotein ZPA by MALDI-TOF MS: a contribution to understanding zona pellucida structure.
T2 147-300 Sentence denotes The mammalian oocyte is encased by a transparent extracellular matrix, the zona pellucida (ZP), which consists of three glycoproteins, ZPA, ZPB, and ZPC.
T3 301-434 Sentence denotes The glycan structures of the porcine ZP and the complete N-glycosylation pattern of the ZPB/ZPC oligomer has been recently described.
T4 435-612 Sentence denotes Here we report the N-glycan pattern and N-glycosylation sites of the porcine ZP glycoprotein ZPA of an immature oocyte population as determined by a mass spectrometric approach.
T5 613-930 Sentence denotes In-gel deglycosylation of the electrophoretically separated ZPA protein and comparison of the pattern obtained from the native, the desialylated and the endo-beta-galactosidase-treated glycoprotein allowed the assignment of the glycan structures by MALDI-TOF MS by considering the reported oligosaccharide structures.
T6 931-1044 Sentence denotes The major N-glycans are neutral biantennary complex structures containing one or two terminal galactose residues.
T7 1045-1147 Sentence denotes Complex N-glycans carrying N-acetyllactosamine repeats are minor components and are mostly sialylated.
T8 1148-1246 Sentence denotes A significant signal corresponding to a high-mannose type chain appeared in the three glycan maps.
T9 1247-1313 Sentence denotes MS/MS analysis confirmed its identity as a pentamannosyl N-glycan.
T10 1314-1611 Sentence denotes By the combination of tryptic digestion of the endo-beta-galactosidase-treated ZP glycoprotein mixture and in-gel digestion of ZPA with lectin affinity chromatography and reverse-phase HPLC, five of six N-glycosylation sites at Asn(84/93), Asn268, Asn316, Asn323, and Asn530 were identified by MS.
T11 1612-1859 Sentence denotes Only one site was found to be glycosylated in the N-terminal tryptic glycopeptide with Asn(84/93.) N-glycosidase F treatment of the isolated glycopeptides and MS analysis resulted in the identification of the corresponding deglycosylated peptides.

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 40-54 Body_part denotes zona pellucida http://purl.obolibrary.org/obo/GO_0035805|http://purl.obolibrary.org/obo/UBERON_0000086|http://purl.obolibrary.org/obo/UBERON_0003125
T4 121-135 Body_part denotes zona pellucida http://purl.obolibrary.org/obo/GO_0035805|http://purl.obolibrary.org/obo/UBERON_0000086|http://purl.obolibrary.org/obo/UBERON_0003125
T7 161-167 Body_part denotes oocyte http://purl.obolibrary.org/obo/CL_0000023
T8 196-216 Body_part denotes extracellular matrix http://purl.obolibrary.org/obo/GO_0031012
T9 222-236 Body_part denotes zona pellucida http://purl.obolibrary.org/obo/GO_0035805|http://purl.obolibrary.org/obo/UBERON_0000086|http://purl.obolibrary.org/obo/UBERON_0003125
T12 238-240 Body_part denotes ZP http://purl.obolibrary.org/obo/GO_0035805
T13 338-340 Body_part denotes ZP http://purl.obolibrary.org/obo/GO_0035805
T14 512-514 Body_part denotes ZP http://purl.obolibrary.org/obo/GO_0035805
T15 547-553 Body_part denotes oocyte http://purl.obolibrary.org/obo/CL_0000023
T16 1393-1395 Body_part denotes ZP http://purl.obolibrary.org/obo/GO_0035805

CL-cell

Id Subject Object Predicate Lexical cue cl_id
T1 161-167 Cell denotes oocyte http://purl.obolibrary.org/obo/CL:0000023
T2 547-553 Cell denotes oocyte http://purl.obolibrary.org/obo/CL:0000023