PubMed:15583840
Annnotations
LitCoin-entities
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| 1231 | 0-5 | DiseaseOrPhenotypicFeature | denotes | Tumor | MESH:D009369 |
| 1232 | 60-68 | OrganismTaxon | denotes | patients | NCBITaxon:9606 |
| 1233 | 74-87 | DiseaseOrPhenotypicFeature | denotes | breast cancer | MESH:D001943 |
| 1234 | 89-102 | DiseaseOrPhenotypicFeature | denotes | Breast cancer | MESH:D001943 |
| 1235 | 142-149 | DiseaseOrPhenotypicFeature | denotes | cancers | MESH:D009369 |
| 1236 | 187-192 | DiseaseOrPhenotypicFeature | denotes | tumor | MESH:D009369 |
| 1237 | 355-368 | DiseaseOrPhenotypicFeature | denotes | breast cancer | MESH:D001943 |
| 1238 | 450-463 | DiseaseOrPhenotypicFeature | denotes | breast cancer | MESH:D001943 |
| 1239 | 464-472 | OrganismTaxon | denotes | patients | NCBITaxon:9606 |
| 1240 | 709-722 | DiseaseOrPhenotypicFeature | denotes | breast cancer | MESH:D001943 |
| 1241 | 723-731 | OrganismTaxon | denotes | patients | NCBITaxon:9606 |
| 1242 | 736-748 | DiseaseOrPhenotypicFeature | denotes | colon cancer | MESH:D015179 |
| 1243 | 749-757 | OrganismTaxon | denotes | patients | NCBITaxon:9606 |
| 1244 | 1286-1298 | DiseaseOrPhenotypicFeature | denotes | colon cancer | MESH:D015179 |
| 1245 | 1299-1307 | OrganismTaxon | denotes | patients | NCBITaxon:9606 |
| 1246 | 1486-1491 | DiseaseOrPhenotypicFeature | denotes | tumor | MESH:D009369 |
| 1247 | 1515-1520 | OrganismTaxon | denotes | human | NCBITaxon:9606 |
| 1248 | 1521-1534 | DiseaseOrPhenotypicFeature | denotes | breast cancer | MESH:D001943 |
LitCoin-entities-OrganismTaxon-PD
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| T1 | 1014-1020 | OrganismTaxon | denotes | thymus | NCBItxid:49990 |
| T2 | 1515-1520 | OrganismTaxon | denotes | human | NCBItxid:9606 |
LitCoin-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-88 | Sentence | denotes | Tumor associated antigen recognition by autologous serum in patients with breast cancer. |
| T2 | 89-161 | Sentence | denotes | Breast cancer accounts for 30-40% of all deaths from cancers in females. |
| T3 | 162-389 | Sentence | denotes | In an effort to identify tumor associated antigens that may be useful for immunotherapy, we utilized serological analysis of recombinant cDNA expression libraries (SEREX) technique to identify breast cancer-associated antigens. |
| T4 | 390-573 | Sentence | denotes | SEREX screening of cDNA expression libraries derived from 3 breast cancer patients identified a total of 88 positive clones (bcg-1 to bcg-88), including 27 hitherto unknown sequences. |
| T5 | 574-641 | Sentence | denotes | The cDNA sequences and mRNA expression patterns were characterized. |
| T6 | 642-781 | Sentence | denotes | Seroreactivity of the SEREX clones were determined in sera from 75 breast cancer patients, 75 colon cancer patients, and 25 healthy donors. |
| T7 | 782-964 | Sentence | denotes | Expression analysis on a cDNA panel from 17 different normal tissues by reverse transcription-PCR (RT-PCR) revealed tissue restricted mRNA expression of 2 of the 27 unknown antigens. |
| T8 | 965-1096 | Sentence | denotes | Bcg-72 is expressed only in breast, prostate and thymus, while bcg-84 is expressed at moderate levels in testis, spleen and breast. |
| T9 | 1097-1164 | Sentence | denotes | The other 25 unknown antigens were expressed in most other tissues. |
| T10 | 1165-1308 | Sentence | denotes | Serologic assay revealed that 7 out of the 88 clones showed reactivity to at least one serum from either 75 breast or 75 colon cancer patients. |
| T11 | 1309-1391 | Sentence | denotes | These clones did not react with sera from a panel of 25 healthy adult individuals. |
| T12 | 1392-1535 | Sentence | denotes | Our results demonstrate the utility of the SEREX approach for the identification of potential tumor associated antigens in human breast cancer. |
LitCoin_Mondo
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T1 | 74-87 | DiseaseOrPhenotypicFeature | denotes | breast cancer | 0007254 |
| T2 | 81-87 | DiseaseOrPhenotypicFeature | denotes | cancer | 0004992 |
| T3 | 89-102 | DiseaseOrPhenotypicFeature | denotes | Breast cancer | 0007254 |
| T4 | 96-102 | DiseaseOrPhenotypicFeature | denotes | cancer | 0004992 |
| T5 | 142-149 | DiseaseOrPhenotypicFeature | denotes | cancers | 0004992 |
| T6 | 355-368 | DiseaseOrPhenotypicFeature | denotes | breast cancer | 0007254 |
| T7 | 362-368 | DiseaseOrPhenotypicFeature | denotes | cancer | 0004992 |
| T8 | 450-463 | DiseaseOrPhenotypicFeature | denotes | breast cancer | 0007254 |
| T9 | 457-463 | DiseaseOrPhenotypicFeature | denotes | cancer | 0004992 |
| T10 | 709-722 | DiseaseOrPhenotypicFeature | denotes | breast cancer | 0007254 |
| T11 | 716-722 | DiseaseOrPhenotypicFeature | denotes | cancer | 0004992 |
| T12 | 742-748 | DiseaseOrPhenotypicFeature | denotes | cancer | 0004992 |
| T13 | 1001-1009 | DiseaseOrPhenotypicFeature | denotes | prostate | 0005280 |
| T14 | 1292-1298 | DiseaseOrPhenotypicFeature | denotes | cancer | 0004992 |
| T15 | 1521-1534 | DiseaseOrPhenotypicFeature | denotes | breast cancer | 0007254 |
| T16 | 1528-1534 | DiseaseOrPhenotypicFeature | denotes | cancer | 0004992 |
LitCoin-GeneOrGeneProduct-v0
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-5 | GeneOrGeneProduct | denotes | Tumor |
| T2 | 17-24 | GeneOrGeneProduct | denotes | antigen |
| T3 | 112-118 | GeneOrGeneProduct | denotes | for 30 |
| T4 | 126-129 | GeneOrGeneProduct | denotes | all |
| T5 | 187-192 | GeneOrGeneProduct | denotes | tumor |
| T6 | 204-212 | GeneOrGeneProduct | denotes | antigens |
| T7 | 287-298 | GeneOrGeneProduct | denotes | recombinant |
| T8 | 299-303 | GeneOrGeneProduct | denotes | cDNA |
| T9 | 355-388 | GeneOrGeneProduct | denotes | breast cancer-associated antigens |
| T10 | 409-413 | GeneOrGeneProduct | denotes | cDNA |
| T11 | 486-491 | GeneOrGeneProduct | denotes | total |
| T12 | 507-513 | GeneOrGeneProduct | denotes | clones |
| T13 | 515-520 | GeneOrGeneProduct | denotes | bcg-1 |
| T14 | 555-562 | GeneOrGeneProduct | denotes | unknown |
| T15 | 578-582 | GeneOrGeneProduct | denotes | cDNA |
| T16 | 597-601 | GeneOrGeneProduct | denotes | mRNA |
| T17 | 670-676 | GeneOrGeneProduct | denotes | clones |
| T18 | 682-692 | GeneOrGeneProduct | denotes | determined |
| T19 | 696-700 | GeneOrGeneProduct | denotes | sera |
| T20 | 807-811 | GeneOrGeneProduct | denotes | cDNA |
| T21 | 862-875 | GeneOrGeneProduct | denotes | transcription |
| T22 | 916-920 | GeneOrGeneProduct | denotes | mRNA |
| T23 | 947-954 | GeneOrGeneProduct | denotes | unknown |
| T24 | 955-963 | GeneOrGeneProduct | denotes | antigens |
| T25 | 1070-1076 | GeneOrGeneProduct | denotes | testis |
| T26 | 1101-1106 | GeneOrGeneProduct | denotes | other |
| T27 | 1110-1117 | GeneOrGeneProduct | denotes | unknown |
| T28 | 1118-1126 | GeneOrGeneProduct | denotes | antigens |
| T29 | 1150-1155 | GeneOrGeneProduct | denotes | other |
| T30 | 1197-1200 | GeneOrGeneProduct | denotes | out |
| T31 | 1211-1217 | GeneOrGeneProduct | denotes | clones |
| T32 | 1280-1285 | GeneOrGeneProduct | denotes | or 75 |
| T33 | 1315-1321 | GeneOrGeneProduct | denotes | clones |
| T34 | 1341-1345 | GeneOrGeneProduct | denotes | sera |
| T35 | 1486-1491 | GeneOrGeneProduct | denotes | tumor |
| T36 | 1503-1514 | GeneOrGeneProduct | denotes | antigens in |
LitCoin-GeneOrGeneProduct-v2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 17-24 | GeneOrGeneProduct | denotes | antigen |
| T2 | 299-303 | GeneOrGeneProduct | denotes | cDNA |
| T3 | 355-388 | GeneOrGeneProduct | denotes | breast cancer-associated antigens |
| T4 | 409-413 | GeneOrGeneProduct | denotes | cDNA |
| T5 | 555-562 | GeneOrGeneProduct | denotes | unknown |
| T6 | 578-582 | GeneOrGeneProduct | denotes | cDNA |
| T7 | 597-601 | GeneOrGeneProduct | denotes | mRNA |
| T8 | 807-811 | GeneOrGeneProduct | denotes | cDNA |
| T9 | 862-875 | GeneOrGeneProduct | denotes | transcription |
| T10 | 916-920 | GeneOrGeneProduct | denotes | mRNA |
| T11 | 947-954 | GeneOrGeneProduct | denotes | unknown |
| T12 | 1070-1076 | GeneOrGeneProduct | denotes | testis |
| T13 | 1101-1106 | GeneOrGeneProduct | denotes | other |
| T14 | 1110-1117 | GeneOrGeneProduct | denotes | unknown |
| T15 | 1150-1155 | GeneOrGeneProduct | denotes | other |
LitCoin-Disease-MeSH
| Id | Subject | Object | Predicate | Lexical cue | originalLabel |
|---|---|---|---|---|---|
| T1 | 0-5 | DiseaseOrPhenotypicFeature | denotes | Tumor | D009369 |
| T2 | 74-87 | DiseaseOrPhenotypicFeature | denotes | breast cancer | D001943 |
| T3 | 89-102 | DiseaseOrPhenotypicFeature | denotes | Breast cancer | D001943 |
| T4 | 142-149 | DiseaseOrPhenotypicFeature | denotes | cancers | D009369 |
| T5 | 187-192 | DiseaseOrPhenotypicFeature | denotes | tumor | D009369 |
| T6 | 355-368 | DiseaseOrPhenotypicFeature | denotes | breast cancer | D001943 |
| T7 | 450-463 | DiseaseOrPhenotypicFeature | denotes | breast cancer | D001943 |
| T8 | 709-722 | DiseaseOrPhenotypicFeature | denotes | breast cancer | D001943 |
| T9 | 736-748 | DiseaseOrPhenotypicFeature | denotes | colon cancer | D003110 |
| T10 | 1286-1298 | DiseaseOrPhenotypicFeature | denotes | colon cancer | D003110 |
| T11 | 1486-1491 | DiseaseOrPhenotypicFeature | denotes | tumor | D009369 |
| T12 | 1521-1534 | DiseaseOrPhenotypicFeature | denotes | breast cancer | D001943 |
LitCoin-GeneOrGeneProduct-v3
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 355-388 | GeneOrGeneProduct | denotes | breast cancer-associated antigens |
| T2 | 1070-1076 | GeneOrGeneProduct | denotes | testis |
LitCoin_Mondo_095
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T1 | 74-87 | DiseaseOrPhenotypicFeature | denotes | breast cancer | 0007254|0004989 |
| T3 | 89-102 | DiseaseOrPhenotypicFeature | denotes | Breast cancer | 0007254|0004989 |
| T5 | 187-192 | DiseaseOrPhenotypicFeature | denotes | tumor | 0005070 |
| T6 | 355-368 | DiseaseOrPhenotypicFeature | denotes | breast cancer | 0007254|0004989 |
| T8 | 450-463 | DiseaseOrPhenotypicFeature | denotes | breast cancer | 0007254|0004989 |
| T10 | 709-722 | DiseaseOrPhenotypicFeature | denotes | breast cancer | 0007254|0004989 |
| T12 | 736-748 | DiseaseOrPhenotypicFeature | denotes | colon cancer | 0021063|0005575|0002032 |
| T15 | 1286-1298 | DiseaseOrPhenotypicFeature | denotes | colon cancer | 0021063|0005575|0002032 |
| T18 | 1486-1491 | DiseaseOrPhenotypicFeature | denotes | tumor | 0005070 |
| T19 | 1521-1534 | DiseaseOrPhenotypicFeature | denotes | breast cancer | 0007254|0004989 |
LitCoin-MeSH-Disease-2
| Id | Subject | Object | Predicate | Lexical cue | ID: |
|---|---|---|---|---|---|
| T1 | 0-5 | DiseaseOrPhenotypicFeature | denotes | Tumor | D009369 |
| T2 | 74-87 | DiseaseOrPhenotypicFeature | denotes | breast cancer | D001943 |
| T3 | 89-102 | DiseaseOrPhenotypicFeature | denotes | Breast cancer | D001943 |
| T4 | 142-149 | DiseaseOrPhenotypicFeature | denotes | cancers | D009369 |
| T5 | 187-192 | DiseaseOrPhenotypicFeature | denotes | tumor | D009369 |
| T6 | 355-368 | DiseaseOrPhenotypicFeature | denotes | breast cancer | D001943 |
| T7 | 450-463 | DiseaseOrPhenotypicFeature | denotes | breast cancer | D001943 |
| T8 | 709-722 | DiseaseOrPhenotypicFeature | denotes | breast cancer | D001943 |
| T9 | 736-748 | DiseaseOrPhenotypicFeature | denotes | colon cancer | D003110 |
| T10 | 1286-1298 | DiseaseOrPhenotypicFeature | denotes | colon cancer | D003110 |
| T11 | 1486-1491 | DiseaseOrPhenotypicFeature | denotes | tumor | D009369 |
| T12 | 1521-1534 | DiseaseOrPhenotypicFeature | denotes | breast cancer | D001943 |
LitCoin-MONDO_bioort2019
| Id | Subject | Object | Predicate | Lexical cue | #label |
|---|---|---|---|---|---|
| T1 | 0-5 | DiseaseOrPhenotypicFeature | denotes | Tumor | D009369 |
| T2 | 74-87 | DiseaseOrPhenotypicFeature | denotes | breast cancer | D001943 |
| T3 | 89-102 | DiseaseOrPhenotypicFeature | denotes | Breast cancer | D001943 |
| T4 | 142-149 | DiseaseOrPhenotypicFeature | denotes | cancers | D009369 |
| T5 | 187-192 | DiseaseOrPhenotypicFeature | denotes | tumor | D009369 |
| T6 | 355-368 | DiseaseOrPhenotypicFeature | denotes | breast cancer | D001943 |
| T7 | 450-463 | DiseaseOrPhenotypicFeature | denotes | breast cancer | D001943 |
| T8 | 709-722 | DiseaseOrPhenotypicFeature | denotes | breast cancer | D001943 |
| T9 | 736-748 | DiseaseOrPhenotypicFeature | denotes | colon cancer | D003110 |
| T10 | 1286-1298 | DiseaseOrPhenotypicFeature | denotes | colon cancer | D003110 |
| T11 | 1486-1491 | DiseaseOrPhenotypicFeature | denotes | tumor | D009369 |
| T12 | 1521-1534 | DiseaseOrPhenotypicFeature | denotes | breast cancer | D001943 |
LitCoin-NCBITaxon-2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 60-68 | OrganismTaxon | denotes | patients |
| T2 | 464-472 | OrganismTaxon | denotes | patients |
| T3 | 515-518 | OrganismTaxon | denotes | bcg |
| T4 | 524-527 | OrganismTaxon | denotes | bcg |
| T5 | 723-731 | OrganismTaxon | denotes | patients |
| T6 | 749-757 | OrganismTaxon | denotes | patients |
| T7 | 965-968 | OrganismTaxon | denotes | Bcg |
| T8 | 1014-1020 | OrganismTaxon | denotes | thymus |
| T9 | 1028-1031 | OrganismTaxon | denotes | bcg |
| T10 | 1299-1307 | OrganismTaxon | denotes | patients |
| T11 | 1515-1520 | OrganismTaxon | denotes | human |
LitCoin-training-merged
| Id | Subject | Object | Predicate | Lexical cue | #label |
|---|---|---|---|---|---|
| T2 | 1070-1076 | GeneOrGeneProduct | denotes | testis | |
| T1 | 355-388 | GeneOrGeneProduct | denotes | breast cancer-associated antigens | |
| T12 | 1521-1534 | DiseaseOrPhenotypicFeature | denotes | breast cancer | D001943 |
| T11 | 1486-1491 | DiseaseOrPhenotypicFeature | denotes | tumor | D009369 |
| T10 | 1286-1298 | DiseaseOrPhenotypicFeature | denotes | colon cancer | D003110 |
| T9 | 736-748 | DiseaseOrPhenotypicFeature | denotes | colon cancer | D003110 |
| T8 | 709-722 | DiseaseOrPhenotypicFeature | denotes | breast cancer | D001943 |
| T7 | 450-463 | DiseaseOrPhenotypicFeature | denotes | breast cancer | D001943 |
| T6 | 355-368 | DiseaseOrPhenotypicFeature | denotes | breast cancer | D001943 |
| T5 | 187-192 | DiseaseOrPhenotypicFeature | denotes | tumor | D009369 |
| T4 | 142-149 | DiseaseOrPhenotypicFeature | denotes | cancers | D009369 |
| T3 | 89-102 | DiseaseOrPhenotypicFeature | denotes | Breast cancer | D001943 |
| T60330 | 74-87 | DiseaseOrPhenotypicFeature | denotes | breast cancer | D001943 |
| T50193 | 0-5 | DiseaseOrPhenotypicFeature | denotes | Tumor | D009369 |
| T25977 | 1515-1520 | OrganismTaxon | denotes | human | |
| T78550 | 1299-1307 | OrganismTaxon | denotes | patients | |
| T72933 | 1028-1031 | OrganismTaxon | denotes | bcg | |
| T11226 | 1014-1020 | OrganismTaxon | denotes | thymus | |
| T86501 | 965-968 | OrganismTaxon | denotes | Bcg | |
| T15370 | 749-757 | OrganismTaxon | denotes | patients | |
| T4235 | 723-731 | OrganismTaxon | denotes | patients | |
| T90561 | 524-527 | OrganismTaxon | denotes | bcg | |
| T78648 | 515-518 | OrganismTaxon | denotes | bcg | |
| T40519 | 464-472 | OrganismTaxon | denotes | patients | |
| T75983 | 60-68 | OrganismTaxon | denotes | patients |