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PubMed:1537556 JSONTXT

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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 11-55 protein denotes erythroid and non-erythroid nuclear proteins
T2 63-71 DNA denotes silencer
T3 79-113 DNA denotes human epsilon-globin-encoding gene
T4 192-217 DNA denotes hemoglobin-encoding genes
T5 264-269 DNA denotes genes
T6 273-284 cell_type denotes human cells
T7 354-385 DNA denotes transcriptional control element
T8 411-419 DNA denotes silencer
T9 435-450 DNA denotes -392 to -177 bp
T10 467-475 DNA denotes cap site
T11 483-517 DNA denotes human epsilon-globin-encoding gene
T12 605-613 DNA denotes silencer
T13 650-660 cell_line denotes HeLa cells
T14 677-709 cell_line denotes K562 human erythroleukemia cells
T15 717-733 DNA denotes deletion mutants
T16 920-935 DNA denotes -294 to -251 bp
T17 983-989 protein denotes DNaseI
T18 1144-1148 cell_line denotes HeLa
T19 1153-1163 cell_line denotes K562 cells
T20 1266-1276 cell_line denotes HeLa cells
T21 1356-1384 DNA denotes epsilon-globin-encoding gene
T22 1388-1421 cell_type denotes erythroid and non-erythroid cells

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 11-55 NP denotes erythroid and non-erythroid nuclear proteins
C2 59-71 NP denotes the silencer
C3 75-113 NP denotes the human epsilon-globin-encoding gene
C4 192-217 NP denotes hemoglobin-encoding genes
C5 258-269 NP denotes these genes
C6 409-419 NP denotes a silencer
C7 479-517 NP denotes the human epsilon-globin-encoding gene
C8 600-613 NP denotes this silencer
C9 650-660 NP denotes HeLa cells
C10 677-709 NP denotes K562 human erythroleukemia cells
C11 817-837 NP denotes nucleotide sequences
C12 1027-1062 NP denotes these negative regulatory sequences
C13 1093-1129 NP denotes proteins present in nuclear extracts
C14 1144-1148 NP denotes HeLa
C15 1153-1163 NP denotes K562 cells
C16 1165-1185 NP denotes Two binding proteins
C17 1266-1276 NP denotes HeLa cells
C18 1307-1321 NP denotes these proteins
C19 1352-1384 NP denotes the epsilon-globin-encoding gene
R1 C5 C4 coref-ident these genes,hemoglobin-encoding genes
R2 C6 C2 coref-ident a silencer,the silencer
R3 C7 C3 coref-ident the human epsilon-globin-encoding gene,the human epsilon-globin-encoding gene
R4 C8 C6 coref-ident this silencer,a silencer
R5 C12 C11 coref-ident these negative regulatory sequences,nucleotide sequences
R6 C13 C1 coref-ident proteins present in nuclear extracts,erythroid and non-erythroid nuclear proteins
R7 C14 C9 coref-ident HeLa,HeLa cells
R8 C15 C10 coref-ident K562 cells,K562 human erythroleukemia cells
R9 C16 C13 coref-ident Two binding proteins,proteins present in nuclear extracts
R10 C17 C14 coref-ident HeLa cells,HeLa
R11 C18 C16 coref-ident these proteins,Two binding proteins
R12 C19 C7 coref-ident the epsilon-globin-encoding gene,the human epsilon-globin-encoding gene

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-114 Sentence denotes Binding of erythroid and non-erythroid nuclear proteins to the silencer of the human epsilon-globin-encoding gene.
S2 115-307 Sentence denotes To clarify the molecular mechanisms involved in the developmental control of hemoglobin-encoding genes we have been studying the expression of these genes in human cells in continuous culture.
S3 308-579 Sentence denotes We have previously reported the presence of a transcriptional control element with the properties of a silencer extending from -392 to -177 bp relative to the cap site of the human epsilon-globin-encoding gene [Cao et al., Proc. Natl. Acad. Sci. USA 86 (1989) 5306-5309].
S4 580-710 Sentence denotes We also showed that this silencer has stronger inhibitory activity in HeLa cells, as compared to K562 human erythroleukemia cells.
S5 711-936 Sentence denotes Using deletion mutants and cis-cloned synthetic oligodeoxyribonucleotides in transient expression assays, nucleotide sequences responsible for this effect have now been further delimited to 44 bp located from -294 to -251 bp.
S6 937-1164 Sentence denotes Gel electrophoresis mobility shift assays and DNaseI footprinting assays demonstrate that these negative regulatory sequences are recognized differently by proteins present in nuclear extracts obtained from HeLa and K562 cells.
S7 1165-1277 Sentence denotes Two binding proteins are detected in K562 nuclear extracts, while only one is found in extracts from HeLa cells.
S8 1278-1436 Sentence denotes Possible mechanisms by which these proteins may regulate transcription of the epsilon-globin-encoding gene in erythroid and non-erythroid cells are discussed.

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 63-71 DNA_domain_or_region denotes silencer
T2 79-113 DNA_domain_or_region denotes human epsilon-globin-encoding gene
T3 130-150 other_name denotes molecular mechanisms
T4 192-217 DNA_family_or_group denotes hemoglobin-encoding genes
T5 264-269 DNA_family_or_group denotes genes
T6 273-284 cell_type denotes human cells
T7 354-385 DNA_domain_or_region denotes transcriptional control element
T8 411-419 DNA_domain_or_region denotes silencer
T9 435-450 DNA_domain_or_region denotes -392 to -177 bp
T10 467-475 DNA_domain_or_region denotes cap site
T11 483-517 DNA_domain_or_region denotes human epsilon-globin-encoding gene
T12 605-613 DNA_domain_or_region denotes silencer
T13 650-660 cell_line denotes HeLa cells
T14 677-709 cell_line denotes K562 human erythroleukemia cells
T15 717-733 DNA_family_or_group denotes deletion mutants
T16 738-784 polynucleotide denotes cis-cloned synthetic oligodeoxyribonucleotides
T17 788-815 other_name denotes transient expression assays
T18 901-906 polynucleotide denotes 44 bp
T19 920-935 DNA_domain_or_region denotes -294 to -251 bp
T20 937-978 other_name denotes Gel electrophoresis mobility shift assays
T21 983-989 protein_molecule denotes DNaseI
T22 1113-1129 cell_component denotes nuclear extracts
T23 1144-1148 cell_line denotes HeLa
T24 1153-1163 cell_line denotes K562 cells
T25 1202-1206 cell_component denotes K562
T26 1207-1223 cell_component denotes nuclear extracts
T27 1252-1260 other_name denotes extracts
T28 1266-1276 cell_line denotes HeLa cells
T29 1356-1384 DNA_domain_or_region denotes epsilon-globin-encoding gene
T30 1388-1397 cell_type denotes erythroid
T31 1402-1421 cell_type denotes non-erythroid cells