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PubMed:1532661 JSONTXT

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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 60-84 DNA denotes human interleukin 4 gene
T2 159-170 DNA denotes DNA segment
T3 237-266 DNA denotes human interleukin (IL) 4 gene
T4 270-282 cell_line denotes Jurkat cells
T5 288-303 DNA denotes human IL-4 gene
T6 342-347 DNA denotes exons
T7 358-365 DNA denotes introns
T8 369-387 DNA denotes cis-acting element
T9 389-399 DNA denotes P sequence
T10 416-434 DNA denotes 5' upstream region
T11 450-462 DNA denotes DNA segments
T12 509-524 DNA denotes human IL-4 gene
T13 558-573 DNA denotes fusion promoter
T14 599-662 DNA denotes granulocyte/macrophage colony-stimulating factor basic promoter
T15 674-699 DNA denotes 60 base pairs of sequence
T16 718-726 DNA denotes cap site
T17 734-793 DNA denotes mouse granulocyte/macrophage colony-stimulating factor gene
T18 821-841 DNA denotes 5' upstream sequence
T19 849-858 DNA denotes IL-4 gene
T20 864-874 DNA denotes P sequence
T21 933-957 DNA denotes transcription start site
T22 965-980 DNA denotes human IL-4 gene
T23 1091-1101 DNA denotes P sequence
T24 1155-1170 protein denotes binding protein
T25 1193-1203 DNA denotes P sequence
T26 1211-1220 DNA denotes IL-4 gene
T27 1282-1287 protein denotes NF(P)
T28 1291-1310 protein denotes DNA binding protein
T29 1344-1354 DNA denotes P sequence
T30 1363-1373 DNA denotes P sequence
T31 1469-1474 protein denotes NF(P)
T32 1593-1597 protein denotes IL-4
T33 1622-1632 DNA denotes P sequence
T34 1666-1686 DNA denotes 5' upstream sequence
T35 1694-1703 DNA denotes IL-2 gene
T36 1746-1755 DNA denotes IL-4 gene
T37 1785-1794 DNA denotes IL-2 gene
T38 1832-1840 protein denotes proteins
T39 1851-1870 DNA denotes IL-2 and IL-4 genes

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 56-84 NP denotes the human interleukin 4 gene
C2 157-170 NP denotes a DNA segment
C3 171-175 NP denotes that
C4 233-266 NP denotes the human interleukin (IL) 4 gene
C5 284-303 NP denotes The human IL-4 gene
C6 305-320 NP denotes of 10 kilobases
C7 389-399 NP denotes P sequence
C8 505-524 NP denotes the human IL-4 gene
C9 845-858 NP denotes the IL-4 gene
C10 860-874 NP denotes The P sequence
C12 961-980 NP denotes the human IL-4 gene
C11 895-980 NP denotes positions -79 and -69 relative to the transcription start site of the human IL-4 gene
C13 986-999 NP denotes this location
C14 1087-1101 NP denotes the P sequence
C15 1151-1173 NP denotes The binding protein(s)
C16 1174-1178 NP denotes that
C17 1189-1203 NP denotes the P sequence
C18 1207-1220 NP denotes the IL-4 gene
C19 1289-1310 NP denotes a DNA binding protein
C20 1311-1315 NP denotes that
C21 1340-1354 NP denotes the P sequence
C22 1359-1373 NP denotes the P sequence
C23 1540-1551 NP denotes the protein
C24 1618-1632 NP denotes The P sequence
C25 1690-1703 NP denotes the IL-2 gene
C26 1742-1755 NP denotes the IL-4 gene
C27 1781-1794 NP denotes the IL-2 gene
C28 1851-1855 NP denotes IL-2
C29 1860-1870 NP denotes IL-4 genes
R1 C3 C2 coref-relat that,a DNA segment
R2 C4 C1 coref-ident the human interleukin (IL) 4 gene,the human interleukin 4 gene
R3 C5 C4 coref-ident The human IL-4 gene,the human interleukin (IL) 4 gene
R4 C6 C5 coref-appos of 10 kilobases,The human IL-4 gene
R5 C8 C5 coref-ident the human IL-4 gene,The human IL-4 gene
R6 C9 C8 coref-ident the IL-4 gene,the human IL-4 gene
R7 C10 C7 coref-ident The P sequence,P sequence
R8 C12 C9 coref-ident the human IL-4 gene,the IL-4 gene
R9 C13 C11 coref-ident this location,positions -79 and -69 relative to the transcription start site of the human IL-4 gene
R10 C14 C10 coref-ident the P sequence,The P sequence
R11 C16 C15 coref-relat that,The binding protein(s)
R12 C17 C14 coref-ident the P sequence,the P sequence
R13 C18 C12 coref-ident the IL-4 gene,the human IL-4 gene
R14 C20 C19 coref-relat that,a DNA binding protein
R15 C21 C17 coref-ident the P sequence,the P sequence
R16 C22 C21 coref-ident the P sequence,the P sequence
R17 C23 C19 coref-ident the protein,a DNA binding protein
R18 C24 C22 coref-ident The P sequence,the P sequence
R19 C26 C18 coref-ident the IL-4 gene,the IL-4 gene
R20 C27 C25 coref-ident the IL-2 gene,the IL-2 gene
R21 C28 C27 coref-ident IL-2,the IL-2 gene
R22 C29 C26 coref-ident IL-4 genes,the IL-4 gene

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-137 Sentence denotes An 11-base-pair DNA sequence motif apparently unique to the human interleukin 4 gene confers responsiveness to T-cell activation signals.
S2 138-283 Sentence denotes We have identified a DNA segment that confers responsiveness to antigen stimulation signals on the human interleukin (IL) 4 gene in Jurkat cells.
S3 284-366 Sentence denotes The human IL-4 gene, of 10 kilobases, is composed of four exons and three introns.
S4 367-525 Sentence denotes A cis-acting element (P sequence) resides in the 5' upstream region; no additional DNA segments with enhancer activity were identified in the human IL-4 gene.
S5 526-859 Sentence denotes For further mapping purposes, a fusion promoter was constructed with the granulocyte/macrophage colony-stimulating factor basic promoter containing 60 base pairs of sequence upstream from the cap site of the mouse granulocyte/macrophage colony-stimulating factor gene and various lengths of the 5' upstream sequence of the IL-4 gene.
S6 860-1045 Sentence denotes The P sequence was located between positions -79 and -69 relative to the transcription start site of the human IL-4 gene, and this location was confirmed by base-substitution mutations.
S7 1046-1150 Sentence denotes The plasmids carrying multiple copies of the P sequence showed higher responsiveness to the stimulation.
S8 1151-1266 Sentence denotes The binding protein(s) that recognize the P sequence of the IL-4 gene were identified by DNA-mobility-shift assays.
S9 1267-1617 Sentence denotes The binding of NF(P) (a DNA binding protein that specifically recognizes the P sequence) to the P sequence was abolished when oligonucleotides carrying base substitutions were used, indicating that the NF(P) interaction is sequence-specific and that binding specificity of the protein paralleled the sequence requirements for IL-4 expression in vivo.
S10 1618-1795 Sentence denotes The P sequence does not share homology with the 5' upstream sequence of the IL-2 gene, even though surrounding sequences of the IL-4 gene share high homology with the IL-2 gene.
S11 1796-1871 Sentence denotes We conclude that a different set of proteins recognize IL-2 and IL-4 genes.

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 3-34 DNA_substructure denotes 11-base-pair DNA sequence motif
T2 60-84 DNA_domain_or_region denotes human interleukin 4 gene
T3 111-136 other_name denotes T-cell activation signals
T4 159-170 DNA_domain_or_region denotes DNA segment
T5 237-266 DNA_domain_or_region denotes human interleukin (IL) 4 gene
T6 270-282 cell_line denotes Jurkat cells
T7 288-303 DNA_domain_or_region denotes human IL-4 gene
T8 308-320 polynucleotide denotes 10 kilobases
T9 342-347 DNA_domain_or_region denotes exons
T10 358-365 DNA_domain_or_region denotes introns
T11 369-387 DNA_domain_or_region denotes cis-acting element
T12 389-399 DNA_domain_or_region denotes P sequence
T13 416-434 DNA_domain_or_region denotes 5' upstream region
T14 450-462 DNA_domain_or_region denotes DNA segments
T15 468-485 other_name denotes enhancer activity
T16 509-524 DNA_domain_or_region denotes human IL-4 gene
T17 558-573 DNA_domain_or_region denotes fusion promoter
T18 599-662 DNA_domain_or_region denotes granulocyte/macrophage colony-stimulating factor basic promoter
T19 674-699 DNA_domain_or_region denotes 60 base pairs of sequence
T20 718-726 DNA_domain_or_region denotes cap site
T21 734-788 protein_molecule denotes mouse granulocyte/macrophage colony-stimulating factor
T22 821-841 DNA_domain_or_region denotes 5' upstream sequence
T23 849-858 DNA_domain_or_region denotes IL-4 gene
T24 864-874 DNA_domain_or_region denotes P sequence
T25 933-957 DNA_domain_or_region denotes transcription start site
T26 965-970 DNA_domain_or_region denotes human
T27 971-980 DNA_domain_or_region denotes IL-4 gene
T28 1017-1044 other_name denotes base-substitution mutations
T29 1091-1101 DNA_domain_or_region denotes P sequence
T30 1155-1170 protein_family_or_group denotes binding protein
T31 1193-1203 DNA_domain_or_region denotes P sequence
T32 1211-1220 DNA_domain_or_region denotes IL-4 gene
T33 1240-1265 other_name denotes DNA-mobility-shift assays
T34 1282-1287 protein_molecule denotes NF(P)
T35 1291-1310 protein_family_or_group denotes DNA binding protein
T36 1344-1354 DNA_domain_or_region denotes P sequence
T37 1363-1373 DNA_domain_or_region denotes P sequence
T38 1393-1409 polynucleotide denotes oligonucleotides
T39 1469-1474 protein_molecule denotes NF(P)
T40 1567-1588 other_name denotes sequence requirements
T41 1593-1597 protein_molecule denotes IL-4
T42 1622-1632 DNA_domain_or_region denotes P sequence
T43 1666-1686 DNA_domain_or_region denotes 5' upstream sequence
T44 1694-1703 DNA_domain_or_region denotes IL-2 gene
T45 1746-1755 DNA_domain_or_region denotes IL-4 gene
T46 1785-1794 DNA_domain_or_region denotes IL-2 gene
T47 1832-1840 protein_family_or_group denotes proteins