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Glycan-Motif

Id Subject Object Predicate Lexical cue
T1 746-757 https://glytoucan.org/Structures/Glycans/G81533KY denotes sialic acid
T2 767-776 https://glytoucan.org/Structures/Glycans/G65889KE denotes galactose
T3 767-776 https://glytoucan.org/Structures/Glycans/G68158BT denotes galactose
T4 1561-1572 https://glytoucan.org/Structures/Glycans/G81533KY denotes sialic acid

GlyCosmos6-Glycan-Motif-Image

Id Subject Object Predicate Lexical cue image
T1 746-757 Glycan_Motif denotes sialic acid https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G81533KY
T2 767-776 Glycan_Motif denotes galactose https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G68158BT|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G65889KE
T4 1561-1572 Glycan_Motif denotes sialic acid https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G81533KY

GlyCosmos6-Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T1 746-757 https://glytoucan.org/Structures/Glycans/G81533KY denotes sialic acid
T2 767-776 https://glytoucan.org/Structures/Glycans/G65889KE denotes galactose
T3 767-776 https://glytoucan.org/Structures/Glycans/G68158BT denotes galactose
T4 1561-1572 https://glytoucan.org/Structures/Glycans/G81533KY denotes sialic acid

Glycosmos6-MAT

Id Subject Object Predicate Lexical cue
T1 51-59 http://purl.obolibrary.org/obo/MAT_0000078 denotes prostate
T2 113-121 http://purl.obolibrary.org/obo/MAT_0000078 denotes prostate
T3 140-148 http://purl.obolibrary.org/obo/MAT_0000078 denotes prostate
T4 168-176 http://purl.obolibrary.org/obo/MAT_0000078 denotes prostate
T5 238-246 http://purl.obolibrary.org/obo/MAT_0000078 denotes prostate
T6 299-307 http://purl.obolibrary.org/obo/MAT_0000078 denotes prostate
T7 538-551 http://purl.obolibrary.org/obo/MAT_0000057 denotes seminal fluid
T8 600-613 http://purl.obolibrary.org/obo/MAT_0000057 denotes seminal fluid
T9 837-850 http://purl.obolibrary.org/obo/MAT_0000057 denotes seminal fluid
T10 933-941 http://purl.obolibrary.org/obo/MAT_0000078 denotes prostate
T11 960-968 http://purl.obolibrary.org/obo/MAT_0000078 denotes prostate
T12 1162-1166 http://purl.obolibrary.org/obo/MAT_0000141 denotes Lens
T13 1406-1414 http://purl.obolibrary.org/obo/MAT_0000078 denotes prostate
T14 1450-1458 http://purl.obolibrary.org/obo/MAT_0000078 denotes prostate
T15 1744-1752 http://purl.obolibrary.org/obo/MAT_0000078 denotes prostate
T16 1771-1779 http://purl.obolibrary.org/obo/MAT_0000078 denotes prostate
T17 1838-1846 http://purl.obolibrary.org/obo/MAT_0000078 denotes prostate

GlycoBiology-FMA

Id Subject Object Predicate Lexical cue
_T1 0-12 FMAID:197276 denotes Carbohydrate
_T2 0-12 FMAID:82737 denotes Carbohydrate
_T3 51-59 FMAID:97485 denotes prostate
_T4 51-59 FMAID:9600 denotes prostate
_T5 113-121 FMAID:97485 denotes prostate
_T6 113-121 FMAID:9600 denotes prostate
_T7 140-148 FMAID:97485 denotes prostate
_T8 140-148 FMAID:9600 denotes prostate
_T9 162-167 FMAID:167330 denotes Serum
_T10 168-176 FMAID:97485 denotes prostate
_T11 168-176 FMAID:9600 denotes prostate
_T12 225-246 FMAID:111907 denotes detection of prostate
_T13 238-246 FMAID:97485 denotes prostate
_T14 238-246 FMAID:9600 denotes prostate
_T15 299-307 FMAID:97485 denotes prostate
_T16 299-307 FMAID:9600 denotes prostate
_T17 372-377 FMAID:167330 denotes serum
_T18 382-386 FMAID:178661 denotes test
_T19 419-431 FMAID:82737 denotes carbohydrate
_T20 419-431 FMAID:197276 denotes carbohydrate
_T21 538-551 FMAID:167309 denotes seminal fluid
_T22 600-613 FMAID:167309 denotes seminal fluid
_T23 649-664 FMAID:196731 denotes oligosaccharide
_T24 649-664 FMAID:82742 denotes oligosaccharide
_T25 767-776 FMAID:82794 denotes galactose
_T26 767-776 FMAID:196789 denotes galactose
_T27 811-823 FMAID:82737 denotes carbohydrate
_T28 811-823 FMAID:197276 denotes carbohydrate
_T29 837-850 FMAID:167309 denotes seminal fluid
_T30 877-889 FMAID:82737 denotes carbohydrate
_T31 877-889 FMAID:197276 denotes carbohydrate
_T32 900-905 FMAID:167330 denotes serum
_T33 933-941 FMAID:9600 denotes prostate
_T34 933-941 FMAID:97485 denotes prostate
_T35 960-968 FMAID:9600 denotes prostate
_T36 960-968 FMAID:97485 denotes prostate
_T37 1066-1072 FMAID:76737 denotes column
_T38 1066-1072 FMAID:183891 denotes column
_T39 1162-1166 FMAID:158042 denotes Lens
_T40 1162-1166 FMAID:58241 denotes Lens
_T41 1247-1253 FMAID:178661 denotes tested
_T42 1279-1292 FMAID:197276 denotes carbohydrates
_T43 1279-1292 FMAID:82737 denotes carbohydrates
_T44 1380-1385 FMAID:167330 denotes serum
_T45 1406-1414 FMAID:9600 denotes prostate
_T46 1406-1414 FMAID:97485 denotes prostate
_T47 1450-1458 FMAID:9600 denotes prostate
_T48 1450-1458 FMAID:97485 denotes prostate
_T49 1596-1603 FMAID:146300 denotes surface
_T50 1596-1603 FMAID:50594 denotes surface
_T51 1692-1697 FMAID:167330 denotes serum
_T52 1744-1752 FMAID:97485 denotes prostate
_T53 1744-1752 FMAID:9600 denotes prostate
_T54 1771-1779 FMAID:97485 denotes prostate
_T55 1771-1779 FMAID:9600 denotes prostate
_T56 1838-1846 FMAID:9600 denotes prostate
_T57 1838-1846 FMAID:97485 denotes prostate

uniprot-human

Id Subject Object Predicate Lexical cue
T1 51-76 http://www.uniprot.org/uniprot/P07288 denotes prostate specific antigen
T2 168-193 http://www.uniprot.org/uniprot/P07288 denotes prostate-specific antigen
T3 195-198 http://www.uniprot.org/uniprot/P07288 denotes PSA
T4 263-266 http://www.uniprot.org/uniprot/P07288 denotes PSA
T5 378-381 http://www.uniprot.org/uniprot/P07288 denotes PSA
T6 465-468 http://www.uniprot.org/uniprot/P07288 denotes PSA
T7 514-517 http://www.uniprot.org/uniprot/P07288 denotes PSA
T8 614-617 http://www.uniprot.org/uniprot/P07288 denotes PSA
T9 851-854 http://www.uniprot.org/uniprot/P07288 denotes PSA
T10 906-909 http://www.uniprot.org/uniprot/P07288 denotes PSA
T11 1141-1144 http://www.uniprot.org/uniprot/P07288 denotes PSA
T12 1296-1299 http://www.uniprot.org/uniprot/P07288 denotes PSA
T13 1386-1389 http://www.uniprot.org/uniprot/P07288 denotes PSA
T14 1496-1499 http://www.uniprot.org/uniprot/P07288 denotes PSA
T15 1698-1701 http://www.uniprot.org/uniprot/P07288 denotes PSA
T16 51-76 http://www.uniprot.org/uniprot/Q16305 denotes prostate specific antigen
T17 168-193 http://www.uniprot.org/uniprot/Q16305 denotes prostate-specific antigen
T18 195-198 http://www.uniprot.org/uniprot/Q9Y617 denotes PSA
T19 263-266 http://www.uniprot.org/uniprot/Q9Y617 denotes PSA
T20 378-381 http://www.uniprot.org/uniprot/Q9Y617 denotes PSA
T21 465-468 http://www.uniprot.org/uniprot/Q9Y617 denotes PSA
T22 514-517 http://www.uniprot.org/uniprot/Q9Y617 denotes PSA
T23 614-617 http://www.uniprot.org/uniprot/Q9Y617 denotes PSA
T24 851-854 http://www.uniprot.org/uniprot/Q9Y617 denotes PSA
T25 906-909 http://www.uniprot.org/uniprot/Q9Y617 denotes PSA
T26 1141-1144 http://www.uniprot.org/uniprot/Q9Y617 denotes PSA
T27 1296-1299 http://www.uniprot.org/uniprot/Q9Y617 denotes PSA
T28 1386-1389 http://www.uniprot.org/uniprot/Q9Y617 denotes PSA
T29 1496-1499 http://www.uniprot.org/uniprot/Q9Y617 denotes PSA
T30 1698-1701 http://www.uniprot.org/uniprot/Q9Y617 denotes PSA
T31 195-198 http://www.uniprot.org/uniprot/P55786 denotes PSA
T32 263-266 http://www.uniprot.org/uniprot/P55786 denotes PSA
T33 378-381 http://www.uniprot.org/uniprot/P55786 denotes PSA
T34 465-468 http://www.uniprot.org/uniprot/P55786 denotes PSA
T35 514-517 http://www.uniprot.org/uniprot/P55786 denotes PSA
T36 614-617 http://www.uniprot.org/uniprot/P55786 denotes PSA
T37 851-854 http://www.uniprot.org/uniprot/P55786 denotes PSA
T38 906-909 http://www.uniprot.org/uniprot/P55786 denotes PSA
T39 1141-1144 http://www.uniprot.org/uniprot/P55786 denotes PSA
T40 1296-1299 http://www.uniprot.org/uniprot/P55786 denotes PSA
T41 1386-1389 http://www.uniprot.org/uniprot/P55786 denotes PSA
T42 1496-1499 http://www.uniprot.org/uniprot/P55786 denotes PSA
T43 1698-1701 http://www.uniprot.org/uniprot/P55786 denotes PSA

uniprot-mouse

Id Subject Object Predicate Lexical cue
T1 195-198 http://www.uniprot.org/uniprot/Q11011 denotes PSA
T2 263-266 http://www.uniprot.org/uniprot/Q11011 denotes PSA
T3 378-381 http://www.uniprot.org/uniprot/Q11011 denotes PSA
T4 465-468 http://www.uniprot.org/uniprot/Q11011 denotes PSA
T5 514-517 http://www.uniprot.org/uniprot/Q11011 denotes PSA
T6 614-617 http://www.uniprot.org/uniprot/Q11011 denotes PSA
T7 851-854 http://www.uniprot.org/uniprot/Q11011 denotes PSA
T8 906-909 http://www.uniprot.org/uniprot/Q11011 denotes PSA
T9 1141-1144 http://www.uniprot.org/uniprot/Q11011 denotes PSA
T10 1296-1299 http://www.uniprot.org/uniprot/Q11011 denotes PSA
T11 1386-1389 http://www.uniprot.org/uniprot/Q11011 denotes PSA
T12 1496-1499 http://www.uniprot.org/uniprot/Q11011 denotes PSA
T13 1698-1701 http://www.uniprot.org/uniprot/Q11011 denotes PSA

GlycoBiology-NCBITAXON

Id Subject Object Predicate Lexical cue
T1 80-87 http://purl.bioontology.org/ontology/NCBITAXON/37500 denotes Maackia
T2 80-97 http://purl.bioontology.org/ontology/NCBITAXON/37501 denotes Maackia amurensis
T3 122-128 http://purl.bioontology.org/ontology/NCBITAXON/6754 denotes cancer
T4 149-160 http://purl.bioontology.org/ontology/NCBITAXON/1178292 denotes hypertrophy
T5 149-160 http://purl.bioontology.org/ontology/NCBITAXON/1073816 denotes hypertrophy
T6 247-253 http://purl.bioontology.org/ontology/NCBITAXON/6754 denotes cancer
T7 401-407 http://purl.bioontology.org/ontology/NCBITAXON/6754 denotes cancer
T8 942-948 http://purl.bioontology.org/ontology/NCBITAXON/6754 denotes cancer
T9 969-980 http://purl.bioontology.org/ontology/NCBITAXON/1178292 denotes hypertrophy
T10 969-980 http://purl.bioontology.org/ontology/NCBITAXON/1073816 denotes hypertrophy
T11 1162-1166 http://purl.bioontology.org/ontology/NCBITAXON/3863 denotes Lens
T12 1162-1176 http://purl.bioontology.org/ontology/NCBITAXON/3864 denotes Lens culinaris
T13 1178-1185 http://purl.bioontology.org/ontology/NCBITAXON/5187 denotes Aleuria
T14 1178-1194 http://purl.bioontology.org/ontology/NCBITAXON/5188 denotes Aleuria aurantia
T15 1196-1210 http://purl.bioontology.org/ontology/NCBITAXON/4202 denotes Sambucus nigra
T16 1216-1223 http://purl.bioontology.org/ontology/NCBITAXON/37500 denotes Maackia
T17 1216-1233 http://purl.bioontology.org/ontology/NCBITAXON/37501 denotes Maackia amurensis
T18 1415-1421 http://purl.bioontology.org/ontology/NCBITAXON/6754 denotes cancer
T19 1459-1470 http://purl.bioontology.org/ontology/NCBITAXON/1178292 denotes hypertrophy
T20 1459-1470 http://purl.bioontology.org/ontology/NCBITAXON/1073816 denotes hypertrophy
T21 1753-1759 http://purl.bioontology.org/ontology/NCBITAXON/6754 denotes cancer
T22 1780-1791 http://purl.bioontology.org/ontology/NCBITAXON/1178292 denotes hypertrophy
T23 1780-1791 http://purl.bioontology.org/ontology/NCBITAXON/1073816 denotes hypertrophy
T24 1847-1853 http://purl.bioontology.org/ontology/NCBITAXON/6754 denotes cancer

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-161 Sentence denotes Carbohydrate structure and differential binding of prostate specific antigen to Maackia amurensis lectin between prostate cancer and benign prostate hypertrophy.
TextSentencer_T2 162-254 Sentence denotes Serum prostate-specific antigen (PSA) assay is widely used for detection of prostate cancer.
TextSentencer_T3 255-387 Sentence denotes Because PSA is also synthesized from normal prostate, false positive diagnosis cannot be avoided by the conventional serum PSA test.
TextSentencer_T4 388-552 Sentence denotes To apply the cancer-associated carbohydrate alteration to the improvement of PSA assay, we first elucidated the structures of PSA purified from human seminal fluid.
TextSentencer_T5 553-723 Sentence denotes The predominant core structure of N-glycans of seminal fluid PSA was a complex type biantennary oligosaccharide and was consistent with the structure reported previously.
TextSentencer_T6 724-855 Sentence denotes However, we found the sialic acid alpha2-3 galactose linkage as an additional terminal carbohydrate structure on seminal fluid PSA.
TextSentencer_T7 856-1018 Sentence denotes We then analyzed the carbohydrate moiety of serum PSA from the patients with prostate cancer and benign prostate hypertrophy using lectin affinity chromatography.
TextSentencer_T8 1019-1145 Sentence denotes Lectin binding was assessed by lectin affinity column chromatography followed by determining the amount of total and free PSA.
TextSentencer_T9 1146-1300 Sentence denotes Concanavalin A, Lens culinaris, Aleuria aurantia, Sambucus nigra, and Maackia amurensis lectins were tested for their binding to the carbohydrates on PSA.
TextSentencer_T10 1301-1480 Sentence denotes Among the lectins examined, the M. amurensis agglutinin-bound fraction of free serum PSA is increased in prostate cancer patients compared to benign prostate hypertrophy patients.
TextSentencer_T11 1481-1631 Sentence denotes The binding of PSA to M. amurensis agglutinin, which recognizes alpha2,3-linked sialic acid, was also confirmed by surface plasmon resonance analysis.
TextSentencer_T12 1632-1854 Sentence denotes These results suggest that the differential binding of free serum PSA to M. amurensis agglutinin lectin between prostate cancer and benign prostate hypertrophy could be a potential measure for diagnosis of prostate cancer.
T1 0-161 Sentence denotes Carbohydrate structure and differential binding of prostate specific antigen to Maackia amurensis lectin between prostate cancer and benign prostate hypertrophy.
T2 162-254 Sentence denotes Serum prostate-specific antigen (PSA) assay is widely used for detection of prostate cancer.
T3 255-387 Sentence denotes Because PSA is also synthesized from normal prostate, false positive diagnosis cannot be avoided by the conventional serum PSA test.
T4 388-552 Sentence denotes To apply the cancer-associated carbohydrate alteration to the improvement of PSA assay, we first elucidated the structures of PSA purified from human seminal fluid.
T5 553-723 Sentence denotes The predominant core structure of N-glycans of seminal fluid PSA was a complex type biantennary oligosaccharide and was consistent with the structure reported previously.
T6 724-855 Sentence denotes However, we found the sialic acid alpha2-3 galactose linkage as an additional terminal carbohydrate structure on seminal fluid PSA.
T7 856-1018 Sentence denotes We then analyzed the carbohydrate moiety of serum PSA from the patients with prostate cancer and benign prostate hypertrophy using lectin affinity chromatography.
T8 1019-1145 Sentence denotes Lectin binding was assessed by lectin affinity column chromatography followed by determining the amount of total and free PSA.
T9 1146-1300 Sentence denotes Concanavalin A, Lens culinaris, Aleuria aurantia, Sambucus nigra, and Maackia amurensis lectins were tested for their binding to the carbohydrates on PSA.
T10 1301-1480 Sentence denotes Among the lectins examined, the M. amurensis agglutinin-bound fraction of free serum PSA is increased in prostate cancer patients compared to benign prostate hypertrophy patients.
T11 1481-1631 Sentence denotes The binding of PSA to M. amurensis agglutinin, which recognizes alpha2,3-linked sialic acid, was also confirmed by surface plasmon resonance analysis.
T12 1632-1854 Sentence denotes These results suggest that the differential binding of free serum PSA to M. amurensis agglutinin lectin between prostate cancer and benign prostate hypertrophy could be a potential measure for diagnosis of prostate cancer.
T1 0-161 Sentence denotes Carbohydrate structure and differential binding of prostate specific antigen to Maackia amurensis lectin between prostate cancer and benign prostate hypertrophy.
T2 162-254 Sentence denotes Serum prostate-specific antigen (PSA) assay is widely used for detection of prostate cancer.
T3 255-387 Sentence denotes Because PSA is also synthesized from normal prostate, false positive diagnosis cannot be avoided by the conventional serum PSA test.
T4 388-552 Sentence denotes To apply the cancer-associated carbohydrate alteration to the improvement of PSA assay, we first elucidated the structures of PSA purified from human seminal fluid.
T5 553-723 Sentence denotes The predominant core structure of N-glycans of seminal fluid PSA was a complex type biantennary oligosaccharide and was consistent with the structure reported previously.
T6 724-855 Sentence denotes However, we found the sialic acid alpha2-3 galactose linkage as an additional terminal carbohydrate structure on seminal fluid PSA.
T7 856-1018 Sentence denotes We then analyzed the carbohydrate moiety of serum PSA from the patients with prostate cancer and benign prostate hypertrophy using lectin affinity chromatography.
T8 1019-1145 Sentence denotes Lectin binding was assessed by lectin affinity column chromatography followed by determining the amount of total and free PSA.
T9 1146-1300 Sentence denotes Concanavalin A, Lens culinaris, Aleuria aurantia, Sambucus nigra, and Maackia amurensis lectins were tested for their binding to the carbohydrates on PSA.
T10 1301-1480 Sentence denotes Among the lectins examined, the M. amurensis agglutinin-bound fraction of free serum PSA is increased in prostate cancer patients compared to benign prostate hypertrophy patients.
T11 1481-1631 Sentence denotes The binding of PSA to M. amurensis agglutinin, which recognizes alpha2,3-linked sialic acid, was also confirmed by surface plasmon resonance analysis.
T12 1632-1854 Sentence denotes These results suggest that the differential binding of free serum PSA to M. amurensis agglutinin lectin between prostate cancer and benign prostate hypertrophy could be a potential measure for diagnosis of prostate cancer.

GO-MF

Id Subject Object Predicate Lexical cue
T1 40-47 http://purl.obolibrary.org/obo/GO_0070026 denotes binding
T2 1026-1033 http://purl.obolibrary.org/obo/GO_0070026 denotes binding
T3 1264-1271 http://purl.obolibrary.org/obo/GO_0070026 denotes binding
T4 1485-1492 http://purl.obolibrary.org/obo/GO_0070026 denotes binding
T5 1676-1683 http://purl.obolibrary.org/obo/GO_0070026 denotes binding
T6 40-47 http://purl.obolibrary.org/obo/GO_0003680 denotes binding
T7 1026-1033 http://purl.obolibrary.org/obo/GO_0003680 denotes binding
T8 1264-1271 http://purl.obolibrary.org/obo/GO_0003680 denotes binding
T9 1485-1492 http://purl.obolibrary.org/obo/GO_0003680 denotes binding
T10 1676-1683 http://purl.obolibrary.org/obo/GO_0003680 denotes binding
T11 40-47 http://purl.obolibrary.org/obo/GO_0017091 denotes binding
T12 1026-1033 http://purl.obolibrary.org/obo/GO_0017091 denotes binding
T13 1264-1271 http://purl.obolibrary.org/obo/GO_0017091 denotes binding
T14 1485-1492 http://purl.obolibrary.org/obo/GO_0017091 denotes binding
T15 1676-1683 http://purl.obolibrary.org/obo/GO_0017091 denotes binding
T16 40-47 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T17 1026-1033 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T18 1264-1271 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T19 1485-1492 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T20 1676-1683 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T21 1264-1292 http://purl.obolibrary.org/obo/GO_0030246 denotes binding to the carbohydrates

GO-CC

Id Subject Object Predicate Lexical cue
T1 569-573 http://purl.obolibrary.org/obo/GO_0019013 denotes core

UBERON-AE

Id Subject Object Predicate Lexical cue
T1 372-377 http://purl.obolibrary.org/obo/UBERON_0001977 denotes serum
T2 900-905 http://purl.obolibrary.org/obo/UBERON_0001977 denotes serum
T3 1380-1385 http://purl.obolibrary.org/obo/UBERON_0001977 denotes serum
T4 1692-1697 http://purl.obolibrary.org/obo/UBERON_0001977 denotes serum
T5 538-551 http://purl.obolibrary.org/obo/UBERON_0006530 denotes seminal fluid
T6 600-613 http://purl.obolibrary.org/obo/UBERON_0006530 denotes seminal fluid
T7 837-850 http://purl.obolibrary.org/obo/UBERON_0006530 denotes seminal fluid

EDAM-topics

Id Subject Object Predicate Lexical cue
T1 0-12 http://edamontology.org/topic_0152 denotes Carbohydrate
T2 69-76 http://edamontology.org/topic_2830 denotes antigen
T3 122-128 http://edamontology.org/topic_2640 denotes cancer
T4 186-193 http://edamontology.org/topic_2830 denotes antigen
T5 247-253 http://edamontology.org/topic_2640 denotes cancer
T6 401-407 http://edamontology.org/topic_2640 denotes cancer
T7 419-431 http://edamontology.org/topic_0152 denotes carbohydrate
T8 532-537 http://edamontology.org/topic_2815 denotes human
T9 777-784 http://edamontology.org/topic_0102 denotes linkage
T10 802-810 http://edamontology.org/topic_0749 denotes terminal
T11 811-823 http://edamontology.org/topic_0152 denotes carbohydrate
T12 877-889 http://edamontology.org/topic_0152 denotes carbohydrate
T13 942-948 http://edamontology.org/topic_2640 denotes cancer
T14 1279-1292 http://edamontology.org/topic_0152 denotes carbohydrates
T15 1415-1421 http://edamontology.org/topic_2640 denotes cancer
T16 1753-1759 http://edamontology.org/topic_2640 denotes cancer
T17 1847-1853 http://edamontology.org/topic_2640 denotes cancer

EDAM-DFO

Id Subject Object Predicate Lexical cue
T1 0-22 http://edamontology.org/data_1462 denotes Carbohydrate structure
T2 13-22 http://edamontology.org/data_0883 denotes structure
T3 225-234 http://edamontology.org/operation_2423 denotes detection
T4 292-298 http://edamontology.org/operation_3435 denotes normal
T5 500-510 http://edamontology.org/data_0883 denotes structures
T6 574-583 http://edamontology.org/data_0883 denotes structure
T7 693-702 http://edamontology.org/data_0883 denotes structure
T8 693-711 http://edamontology.org/data_2085 denotes structure reported
T9 693-711 http://edamontology.org/data_0887 denotes structure reported
T10 703-711 http://edamontology.org/data_2048 denotes reported
T11 811-833 http://edamontology.org/data_1462 denotes carbohydrate structure
T12 824-833 http://edamontology.org/data_0883 denotes structure
T13 1622-1630 http://edamontology.org/operation_2945 denotes analysis
T14 1813-1820 http://edamontology.org/data_3108 denotes measure

GlycoBiology-MAT

Id Subject Object Predicate Lexical cue
T1 51-59 http://purl.obolibrary.org/obo/MAT_0000078 denotes prostate
T2 113-121 http://purl.obolibrary.org/obo/MAT_0000078 denotes prostate
T3 140-148 http://purl.obolibrary.org/obo/MAT_0000078 denotes prostate
T4 168-176 http://purl.obolibrary.org/obo/MAT_0000078 denotes prostate
T5 238-246 http://purl.obolibrary.org/obo/MAT_0000078 denotes prostate
T6 299-307 http://purl.obolibrary.org/obo/MAT_0000078 denotes prostate
T7 538-551 http://purl.obolibrary.org/obo/MAT_0000057 denotes seminal fluid
T8 600-613 http://purl.obolibrary.org/obo/MAT_0000057 denotes seminal fluid
T9 837-850 http://purl.obolibrary.org/obo/MAT_0000057 denotes seminal fluid
T10 933-941 http://purl.obolibrary.org/obo/MAT_0000078 denotes prostate
T11 960-968 http://purl.obolibrary.org/obo/MAT_0000078 denotes prostate
T12 1162-1166 http://purl.obolibrary.org/obo/MAT_0000141 denotes Lens
T13 1406-1414 http://purl.obolibrary.org/obo/MAT_0000078 denotes prostate
T14 1450-1458 http://purl.obolibrary.org/obo/MAT_0000078 denotes prostate
T15 1744-1752 http://purl.obolibrary.org/obo/MAT_0000078 denotes prostate
T16 1771-1779 http://purl.obolibrary.org/obo/MAT_0000078 denotes prostate
T17 1838-1846 http://purl.obolibrary.org/obo/MAT_0000078 denotes prostate

GlycoBiology-Motifs

Id Subject Object Predicate Lexical cue
T1 587-596 http://rdf.glycoinfo.org/glycan/G00027MO denotes N-glycans

Lectin

Id Subject Object Predicate Lexical cue
Lectin_T1 195-198 https://acgg.asia/db/lfdb/LfDB0181 denotes PSA
Lectin_T2 263-266 https://acgg.asia/db/lfdb/LfDB0181 denotes PSA
Lectin_T3 378-381 https://acgg.asia/db/lfdb/LfDB0181 denotes PSA
Lectin_T4 465-468 https://acgg.asia/db/lfdb/LfDB0181 denotes PSA
Lectin_T5 514-517 https://acgg.asia/db/lfdb/LfDB0181 denotes PSA
Lectin_T6 614-617 https://acgg.asia/db/lfdb/LfDB0181 denotes PSA
Lectin_T7 851-854 https://acgg.asia/db/lfdb/LfDB0181 denotes PSA
Lectin_T8 906-909 https://acgg.asia/db/lfdb/LfDB0181 denotes PSA
Lectin_T9 1141-1144 https://acgg.asia/db/lfdb/LfDB0181 denotes PSA
Lectin_T10 1296-1299 https://acgg.asia/db/lfdb/LfDB0181 denotes PSA
Lectin_T11 1386-1389 https://acgg.asia/db/lfdb/LfDB0181 denotes PSA
Lectin_T12 1496-1499 https://acgg.asia/db/lfdb/LfDB0181 denotes PSA
Lectin_T13 1698-1701 https://acgg.asia/db/lfdb/LfDB0181 denotes PSA

performance-test

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 162-167 http://purl.obolibrary.org/obo/UBERON_0001977 denotes Serum
PD-UBERON-AE-B_T2 372-377 http://purl.obolibrary.org/obo/UBERON_0001977 denotes serum
PD-UBERON-AE-B_T3 900-905 http://purl.obolibrary.org/obo/UBERON_0001977 denotes serum
PD-UBERON-AE-B_T4 1380-1385 http://purl.obolibrary.org/obo/UBERON_0001977 denotes serum
PD-UBERON-AE-B_T5 1692-1697 http://purl.obolibrary.org/obo/UBERON_0001977 denotes serum
PD-UBERON-AE-B_T6 538-551 http://purl.obolibrary.org/obo/UBERON_0006530 denotes seminal fluid
PD-UBERON-AE-B_T7 600-613 http://purl.obolibrary.org/obo/UBERON_0006530 denotes seminal fluid
PD-UBERON-AE-B_T8 837-850 http://purl.obolibrary.org/obo/UBERON_0006530 denotes seminal fluid

mondo_disease

Id Subject Object Predicate Lexical cue mondo_id
T1 113-128 Disease denotes prostate cancer http://purl.obolibrary.org/obo/MONDO_0008315
T2 140-160 Disease denotes prostate hypertrophy http://purl.obolibrary.org/obo/MONDO_0010811
T3 238-253 Disease denotes prostate cancer http://purl.obolibrary.org/obo/MONDO_0008315
T4 401-407 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T5 933-948 Disease denotes prostate cancer http://purl.obolibrary.org/obo/MONDO_0008315
T6 960-980 Disease denotes prostate hypertrophy http://purl.obolibrary.org/obo/MONDO_0010811
T7 1406-1421 Disease denotes prostate cancer http://purl.obolibrary.org/obo/MONDO_0008315
T8 1450-1470 Disease denotes prostate hypertrophy http://purl.obolibrary.org/obo/MONDO_0010811
T9 1744-1759 Disease denotes prostate cancer http://purl.obolibrary.org/obo/MONDO_0008315
T10 1771-1791 Disease denotes prostate hypertrophy http://purl.obolibrary.org/obo/MONDO_0010811
T11 1838-1853 Disease denotes prostate cancer http://purl.obolibrary.org/obo/MONDO_0008315

Lectin-Jamboree

Id Subject Object Predicate Lexical cue
T1 98-104 lectin denotes lectin
T2 987-993 lectin denotes lectin
T3 1019-1025 lectin denotes Lectin
T4 1050-1056 lectin denotes lectin
T5 1234-1241 lectin denotes lectins
T6 1311-1318 lectin denotes lectins
T7 1729-1735 lectin denotes lectin

Lectin-Jamboree-small

Id Subject Object Predicate Lexical cue glycosmos_id
T1 195-198 Lectin denotes PSA GL_002304
T2 263-266 Lectin denotes PSA GL_002304
T3 378-381 Lectin denotes PSA GL_002304
T4 465-468 Lectin denotes PSA GL_002304
T5 514-517 Lectin denotes PSA GL_002304
T6 614-617 Lectin denotes PSA GL_002304
T7 851-854 Lectin denotes PSA GL_002304
T8 906-909 Lectin denotes PSA GL_002304
T9 1141-1144 Lectin denotes PSA GL_002304
T10 1296-1299 Lectin denotes PSA GL_002304
T11 1386-1389 Lectin denotes PSA GL_002304
T12 1496-1499 Lectin denotes PSA GL_002304
T13 1698-1701 Lectin denotes PSA GL_002304

Lectin-Jamboree-Sentence

Id Subject Object Predicate Lexical cue
T1 0-161 Sentence denotes Carbohydrate structure and differential binding of prostate specific antigen to Maackia amurensis lectin between prostate cancer and benign prostate hypertrophy.
T2 162-254 Sentence denotes Serum prostate-specific antigen (PSA) assay is widely used for detection of prostate cancer.
T3 255-387 Sentence denotes Because PSA is also synthesized from normal prostate, false positive diagnosis cannot be avoided by the conventional serum PSA test.
T4 388-552 Sentence denotes To apply the cancer-associated carbohydrate alteration to the improvement of PSA assay, we first elucidated the structures of PSA purified from human seminal fluid.
T5 553-723 Sentence denotes The predominant core structure of N-glycans of seminal fluid PSA was a complex type biantennary oligosaccharide and was consistent with the structure reported previously.
T6 724-855 Sentence denotes However, we found the sialic acid alpha2-3 galactose linkage as an additional terminal carbohydrate structure on seminal fluid PSA.
T7 856-1018 Sentence denotes We then analyzed the carbohydrate moiety of serum PSA from the patients with prostate cancer and benign prostate hypertrophy using lectin affinity chromatography.
T8 1019-1145 Sentence denotes Lectin binding was assessed by lectin affinity column chromatography followed by determining the amount of total and free PSA.
T9 1146-1300 Sentence denotes Concanavalin A, Lens culinaris, Aleuria aurantia, Sambucus nigra, and Maackia amurensis lectins were tested for their binding to the carbohydrates on PSA.
T10 1301-1480 Sentence denotes Among the lectins examined, the M. amurensis agglutinin-bound fraction of free serum PSA is increased in prostate cancer patients compared to benign prostate hypertrophy patients.
T11 1481-1631 Sentence denotes The binding of PSA to M. amurensis agglutinin, which recognizes alpha2,3-linked sialic acid, was also confirmed by surface plasmon resonance analysis.
T12 1632-1854 Sentence denotes These results suggest that the differential binding of free serum PSA to M. amurensis agglutinin lectin between prostate cancer and benign prostate hypertrophy could be a potential measure for diagnosis of prostate cancer.

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 80-97 OrganismTaxon denotes Maackia amurensis 37501
T2 532-537 OrganismTaxon denotes human 9606
T3 1162-1176 OrganismTaxon denotes Lens culinaris 3864
T4 1178-1194 OrganismTaxon denotes Aleuria aurantia 5188
T5 1196-1210 OrganismTaxon denotes Sambucus nigra 4202
T6 1216-1233 OrganismTaxon denotes Maackia amurensis 37501

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 51-59 Body_part denotes prostate http://purl.obolibrary.org/obo/UBERON_0002367
T2 113-121 Body_part denotes prostate http://purl.obolibrary.org/obo/UBERON_0002367
T3 140-148 Body_part denotes prostate http://purl.obolibrary.org/obo/UBERON_0002367
T4 168-176 Body_part denotes prostate http://purl.obolibrary.org/obo/UBERON_0002367
T5 238-246 Body_part denotes prostate http://purl.obolibrary.org/obo/UBERON_0002367
T6 299-307 Body_part denotes prostate http://purl.obolibrary.org/obo/UBERON_0002367
T7 538-551 Body_part denotes seminal fluid http://purl.obolibrary.org/obo/UBERON_0006530|http://purl.obolibrary.org/obo/UBERON_0010143
T9 600-613 Body_part denotes seminal fluid http://purl.obolibrary.org/obo/UBERON_0006530|http://purl.obolibrary.org/obo/UBERON_0010143
T11 837-850 Body_part denotes seminal fluid http://purl.obolibrary.org/obo/UBERON_0006530|http://purl.obolibrary.org/obo/UBERON_0010143
T13 933-941 Body_part denotes prostate http://purl.obolibrary.org/obo/UBERON_0002367
T14 960-968 Body_part denotes prostate http://purl.obolibrary.org/obo/UBERON_0002367
T15 1162-1166 Body_part denotes Lens http://purl.obolibrary.org/obo/UBERON_0000965|http://purl.obolibrary.org/obo/UBERON_0005389
T17 1406-1414 Body_part denotes prostate http://purl.obolibrary.org/obo/UBERON_0002367
T18 1450-1458 Body_part denotes prostate http://purl.obolibrary.org/obo/UBERON_0002367
T19 1744-1752 Body_part denotes prostate http://purl.obolibrary.org/obo/UBERON_0002367
T20 1771-1779 Body_part denotes prostate http://purl.obolibrary.org/obo/UBERON_0002367
T21 1838-1846 Body_part denotes prostate http://purl.obolibrary.org/obo/UBERON_0002367

Anatomy-MAT

Id Subject Object Predicate Lexical cue mat_id
T1 51-59 Body_part denotes prostate http://purl.obolibrary.org/obo/MAT_0000078
T2 113-121 Body_part denotes prostate http://purl.obolibrary.org/obo/MAT_0000078
T3 140-148 Body_part denotes prostate http://purl.obolibrary.org/obo/MAT_0000078
T4 168-176 Body_part denotes prostate http://purl.obolibrary.org/obo/MAT_0000078
T5 238-246 Body_part denotes prostate http://purl.obolibrary.org/obo/MAT_0000078
T6 299-307 Body_part denotes prostate http://purl.obolibrary.org/obo/MAT_0000078
T7 538-551 Body_part denotes seminal fluid http://purl.obolibrary.org/obo/MAT_0000057
T8 600-613 Body_part denotes seminal fluid http://purl.obolibrary.org/obo/MAT_0000057
T9 837-850 Body_part denotes seminal fluid http://purl.obolibrary.org/obo/MAT_0000057
T10 933-941 Body_part denotes prostate http://purl.obolibrary.org/obo/MAT_0000078
T11 960-968 Body_part denotes prostate http://purl.obolibrary.org/obo/MAT_0000078
T12 1162-1166 Body_part denotes Lens http://purl.obolibrary.org/obo/MAT_0000141
T13 1406-1414 Body_part denotes prostate http://purl.obolibrary.org/obo/MAT_0000078
T14 1450-1458 Body_part denotes prostate http://purl.obolibrary.org/obo/MAT_0000078
T15 1744-1752 Body_part denotes prostate http://purl.obolibrary.org/obo/MAT_0000078
T16 1771-1779 Body_part denotes prostate http://purl.obolibrary.org/obo/MAT_0000078
T17 1838-1846 Body_part denotes prostate http://purl.obolibrary.org/obo/MAT_0000078

HP-phenotype

Id Subject Object Predicate Lexical cue hp_id
T1 113-128 Phenotype denotes prostate cancer HP:0012125
T2 133-160 Phenotype denotes benign prostate hypertrophy HP:0008711
T3 238-253 Phenotype denotes prostate cancer HP:0012125
T4 401-407 Phenotype denotes cancer HP:0002664
T5 933-948 Phenotype denotes prostate cancer HP:0012125
T6 953-980 Phenotype denotes benign prostate hypertrophy HP:0008711
T7 1406-1421 Phenotype denotes prostate cancer HP:0012125
T8 1443-1470 Phenotype denotes benign prostate hypertrophy HP:0008711
T9 1744-1759 Phenotype denotes prostate cancer HP:0012125
T10 1764-1791 Phenotype denotes benign prostate hypertrophy HP:0008711
T11 1838-1853 Phenotype denotes prostate cancer HP:0012125