PubMed:14693911
Annnotations
Glycan-Motif
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 551-558 | https://glytoucan.org/Structures/Glycans/G70323CJ | denotes | mannose |
| T2 | 1078-1085 | https://glytoucan.org/Structures/Glycans/G70323CJ | denotes | mannose |
| T3 | 1355-1362 | https://glytoucan.org/Structures/Glycans/G70323CJ | denotes | mannose |
GlyCosmos6-Glycan-Motif-Image
| Id | Subject | Object | Predicate | Lexical cue | image |
|---|---|---|---|---|---|
| T1 | 551-558 | Glycan_Motif | denotes | mannose | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G70323CJ |
| T2 | 1078-1085 | Glycan_Motif | denotes | mannose | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G70323CJ |
| T3 | 1355-1362 | Glycan_Motif | denotes | mannose | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G70323CJ |
GlyCosmos6-Glycan-Motif-Structure
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 551-558 | https://glytoucan.org/Structures/Glycans/G70323CJ | denotes | mannose |
| T2 | 1078-1085 | https://glytoucan.org/Structures/Glycans/G70323CJ | denotes | mannose |
| T3 | 1355-1362 | https://glytoucan.org/Structures/Glycans/G70323CJ | denotes | mannose |
GlycoBiology-FMA
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| _T1 | 41-46 | FMAID:167330 | denotes | serum |
| _T2 | 47-50 | FMAID:167179 | denotes | IgG |
| _T3 | 58-63 | FMAID:167330 | denotes | serum |
| _T4 | 64-78 | FMAID:167185 | denotes | immunoglobulin |
| _T5 | 64-78 | FMAID:167181 | denotes | immunoglobulin |
| _T6 | 64-78 | FMAID:167178 | denotes | immunoglobulin |
| _T7 | 64-78 | FMAID:62875 | denotes | immunoglobulin |
| _T8 | 64-78 | FMAID:62872 | denotes | immunoglobulin |
| _T9 | 64-78 | FMAID:62876 | denotes | immunoglobulin |
| _T10 | 64-78 | FMAID:167187 | denotes | immunoglobulin |
| _T11 | 64-78 | FMAID:167183 | denotes | immunoglobulin |
| _T12 | 64-78 | FMAID:62873 | denotes | immunoglobulin |
| _T13 | 64-78 | FMAID:62874 | denotes | immunoglobulin |
| _T14 | 64-78 | FMAID:62871 | denotes | immunoglobulin |
| _T15 | 64-78 | FMAID:167177 | denotes | immunoglobulin |
| _T16 | 80-83 | FMAID:167179 | denotes | IgG |
| _T17 | 132-135 | FMAID:167179 | denotes | IgG |
| _T18 | 223-226 | FMAID:167179 | denotes | IgG |
| _T19 | 373-376 | FMAID:167179 | denotes | IgG |
| _T20 | 412-417 | FMAID:167330 | denotes | serum |
| _T21 | 418-421 | FMAID:167179 | denotes | IgG |
| _T22 | 551-558 | FMAID:196796 | denotes | mannose |
| _T23 | 551-558 | FMAID:82801 | denotes | mannose |
| _T24 | 564-580 | FMAID:196731 | denotes | oligosaccharides |
| _T25 | 564-580 | FMAID:82742 | denotes | oligosaccharides |
| _T26 | 653-669 | FMAID:196731 | denotes | oligosaccharides |
| _T27 | 653-669 | FMAID:82742 | denotes | oligosaccharides |
| _T28 | 835-840 | FMAID:167330 | denotes | serum |
| _T29 | 841-844 | FMAID:167179 | denotes | IgG |
| _T30 | 928-930 | FMAID:177548 | denotes | VL |
| _T31 | 1078-1085 | FMAID:82801 | denotes | mannose |
| _T32 | 1078-1085 | FMAID:196796 | denotes | mannose |
| _T33 | 1091-1107 | FMAID:196731 | denotes | oligosaccharides |
| _T34 | 1091-1107 | FMAID:82742 | denotes | oligosaccharides |
| _T35 | 1163-1177 | FMAID:179655 | denotes | regions of Fab |
| _T36 | 1234-1237 | FMAID:167179 | denotes | IgG |
| _T37 | 1238-1251 | FMAID:196778 | denotes | glycopeptides |
| _T38 | 1238-1251 | FMAID:82784 | denotes | glycopeptides |
| _T39 | 1355-1362 | FMAID:82801 | denotes | mannose |
| _T40 | 1355-1362 | FMAID:196796 | denotes | mannose |
| _T41 | 1368-1384 | FMAID:82742 | denotes | oligosaccharides |
| _T42 | 1368-1384 | FMAID:196731 | denotes | oligosaccharides |
| _T43 | 1489-1492 | FMAID:167179 | denotes | IgG |
| _T44 | 1532-1535 | FMAID:167186 | denotes | IgE |
| _T45 | 1541-1544 | FMAID:167179 | denotes | IgG |
| _T46 | 1607-1610 | FMAID:167186 | denotes | IgE |
uniprot-human
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 462-464 | http://www.uniprot.org/uniprot/P04746 | denotes | PA |
| T2 | 462-464 | http://www.uniprot.org/uniprot/Q9UL45 | denotes | PA |
| T3 | 503-505 | http://www.uniprot.org/uniprot/Q99707 | denotes | MS |
| T4 | 1211-1213 | http://www.uniprot.org/uniprot/Q99707 | denotes | MS |
| T5 | 934-937 | http://www.uniprot.org/uniprot/Q9UBS9 | denotes | CH1 |
uniprot-mouse
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 462-464 | http://www.uniprot.org/uniprot/P00688 | denotes | PA |
| T2 | 503-505 | http://www.uniprot.org/uniprot/A6H5Y3 | denotes | MS |
| T3 | 1211-1213 | http://www.uniprot.org/uniprot/A6H5Y3 | denotes | MS |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| TextSentencer_T1 | 0-51 | Sentence | denotes | Site-specific N-glycosylation of chicken serum IgG. |
| TextSentencer_T2 | 52-211 | Sentence | denotes | Avian serum immunoglobulin (IgG or IgY) is functionally equivalent to mammalian IgG but has one additional constant region domain (CH2) in its heavy (H) chain. |
| TextSentencer_T3 | 212-317 | Sentence | denotes | In chicken IgG, each H-chain contains two potential N-glycosylation sites located on CH2 and CH3 domains. |
| TextSentencer_T4 | 318-506 | Sentence | denotes | To clarify characteristics of N-glycosylation on avian IgG, we analyze N-glycans from chicken serum IgG by derivatization with 2-aminopyridine (PA) and identified by HPLC and MALDI-TOF-MS. |
| TextSentencer_T5 | 507-756 | Sentence | denotes | There were two types of N-glycans: (1) high-mannose-type oligosaccharides (monoglucosylated 26.8%, others 10.5%) and (2) biantennary complex-type oligosaccharides (neutral, 29.9%; monosialyl, 29.3%; disialyl, 3.7%) on molar basis of total N-glycans. |
| TextSentencer_T6 | 757-984 | Sentence | denotes | To investigate the site-specific localization of different N-glycans, chicken serum IgG was digested with papain and separated into Fab [containing variable regions (VH + VL) + CH1 + CL] and Fc (containing CH3 + CH4) fragments. |
| TextSentencer_T7 | 985-1210 | Sentence | denotes | Con A stained only Fc (CH3 + CH4) and RCA-I stained only Fab fractions, suggesting that high-mannose-type oligosaccharides were located on Fc (CH3 + CH4) fragments, and variable regions of Fab contains complex-type N-glycans. |
| TextSentencer_T8 | 1211-1451 | Sentence | denotes | MS analysis of chicken IgG-glycopeptides revealed that chicken CH3 domain (structurally equivalent to mammalian CH2 domain) contained only high-mannose-type oligosaccharides, whereas chicken CH2 domain contained only complex-type N-glycans. |
| TextSentencer_T9 | 1452-1611 | Sentence | denotes | The N-glycosylation pattern on avian IgG is more analogous to that in mammalian IgE than IgG, presumably reflecting the structural similarity to mammalian IgE. |
| T1 | 0-51 | Sentence | denotes | Site-specific N-glycosylation of chicken serum IgG. |
| T2 | 52-211 | Sentence | denotes | Avian serum immunoglobulin (IgG or IgY) is functionally equivalent to mammalian IgG but has one additional constant region domain (CH2) in its heavy (H) chain. |
| T3 | 212-317 | Sentence | denotes | In chicken IgG, each H-chain contains two potential N-glycosylation sites located on CH2 and CH3 domains. |
| T4 | 318-506 | Sentence | denotes | To clarify characteristics of N-glycosylation on avian IgG, we analyze N-glycans from chicken serum IgG by derivatization with 2-aminopyridine (PA) and identified by HPLC and MALDI-TOF-MS. |
| T5 | 507-756 | Sentence | denotes | There were two types of N-glycans: (1) high-mannose-type oligosaccharides (monoglucosylated 26.8%, others 10.5%) and (2) biantennary complex-type oligosaccharides (neutral, 29.9%; monosialyl, 29.3%; disialyl, 3.7%) on molar basis of total N-glycans. |
| T6 | 757-984 | Sentence | denotes | To investigate the site-specific localization of different N-glycans, chicken serum IgG was digested with papain and separated into Fab [containing variable regions (VH + VL) + CH1 + CL] and Fc (containing CH3 + CH4) fragments. |
| T7 | 985-1210 | Sentence | denotes | Con A stained only Fc (CH3 + CH4) and RCA-I stained only Fab fractions, suggesting that high-mannose-type oligosaccharides were located on Fc (CH3 + CH4) fragments, and variable regions of Fab contains complex-type N-glycans. |
| T8 | 1211-1451 | Sentence | denotes | MS analysis of chicken IgG-glycopeptides revealed that chicken CH3 domain (structurally equivalent to mammalian CH2 domain) contained only high-mannose-type oligosaccharides, whereas chicken CH2 domain contained only complex-type N-glycans. |
| T9 | 1452-1611 | Sentence | denotes | The N-glycosylation pattern on avian IgG is more analogous to that in mammalian IgE than IgG, presumably reflecting the structural similarity to mammalian IgE. |
| T1 | 0-51 | Sentence | denotes | Site-specific N-glycosylation of chicken serum IgG. |
| T2 | 52-211 | Sentence | denotes | Avian serum immunoglobulin (IgG or IgY) is functionally equivalent to mammalian IgG but has one additional constant region domain (CH2) in its heavy (H) chain. |
| T3 | 212-317 | Sentence | denotes | In chicken IgG, each H-chain contains two potential N-glycosylation sites located on CH2 and CH3 domains. |
| T4 | 318-506 | Sentence | denotes | To clarify characteristics of N-glycosylation on avian IgG, we analyze N-glycans from chicken serum IgG by derivatization with 2-aminopyridine (PA) and identified by HPLC and MALDI-TOF-MS. |
| T5 | 507-756 | Sentence | denotes | There were two types of N-glycans: (1) high-mannose-type oligosaccharides (monoglucosylated 26.8%, others 10.5%) and (2) biantennary complex-type oligosaccharides (neutral, 29.9%; monosialyl, 29.3%; disialyl, 3.7%) on molar basis of total N-glycans. |
| T6 | 757-984 | Sentence | denotes | To investigate the site-specific localization of different N-glycans, chicken serum IgG was digested with papain and separated into Fab [containing variable regions (VH + VL) + CH1 + CL] and Fc (containing CH3 + CH4) fragments. |
| T7 | 985-1210 | Sentence | denotes | Con A stained only Fc (CH3 + CH4) and RCA-I stained only Fab fractions, suggesting that high-mannose-type oligosaccharides were located on Fc (CH3 + CH4) fragments, and variable regions of Fab contains complex-type N-glycans. |
| T8 | 1211-1451 | Sentence | denotes | MS analysis of chicken IgG-glycopeptides revealed that chicken CH3 domain (structurally equivalent to mammalian CH2 domain) contained only high-mannose-type oligosaccharides, whereas chicken CH2 domain contained only complex-type N-glycans. |
| T9 | 1452-1611 | Sentence | denotes | The N-glycosylation pattern on avian IgG is more analogous to that in mammalian IgE than IgG, presumably reflecting the structural similarity to mammalian IgE. |
GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 16-29 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | glycosylation |
| T2 | 266-279 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | glycosylation |
| T3 | 350-363 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | glycosylation |
| T4 | 1458-1471 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | glycosylation |
| T5 | 790-802 | http://purl.obolibrary.org/obo/GO_0051179 | denotes | localization |
| T6 | 849-857 | http://purl.obolibrary.org/obo/GO_0007586 | denotes | digested |
| T7 | 940-942 | http://purl.obolibrary.org/obo/GO_0008813 | denotes | CL |
GO-MF
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 64-78 | http://purl.obolibrary.org/obo/GO_0003823 | denotes | immunoglobulin |
UBERON-AE
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 41-46 | http://purl.obolibrary.org/obo/UBERON_0001977 | denotes | serum |
| T2 | 58-63 | http://purl.obolibrary.org/obo/UBERON_0001977 | denotes | serum |
| T3 | 412-417 | http://purl.obolibrary.org/obo/UBERON_0001977 | denotes | serum |
| T4 | 835-840 | http://purl.obolibrary.org/obo/UBERON_0001977 | denotes | serum |
EDAM-DFO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 95-107 | http://edamontology.org/operation_0004 | denotes | functionally |
| T2 | 466-480 | http://edamontology.org/data_0992 | denotes | and identified |
| T3 | 470-480 | http://edamontology.org/data_2611 | denotes | identified |
| T4 | 470-480 | http://edamontology.org/data_0842 | denotes | identified |
| T5 | 522-527 | http://edamontology.org/data_2100 | denotes | types |
| T6 | 1214-1222 | http://edamontology.org/operation_2945 | denotes | analysis |
| T7 | 1286-1298 | http://edamontology.org/data_0883 | denotes | structurally |
| T8 | 1572-1582 | http://edamontology.org/data_0883 | denotes | structural |
| T9 | 1572-1593 | http://edamontology.org/data_0888 | denotes | structural similarity |
GlycoBiology-Motifs
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 389-398 | http://rdf.glycoinfo.org/glycan/G00027MO | denotes | N-glycans |
| T2 | 531-540 | http://rdf.glycoinfo.org/glycan/G00027MO | denotes | N-glycans |
| T3 | 746-755 | http://rdf.glycoinfo.org/glycan/G00027MO | denotes | N-glycans |
| T4 | 816-825 | http://rdf.glycoinfo.org/glycan/G00027MO | denotes | N-glycans |
| T5 | 1200-1209 | http://rdf.glycoinfo.org/glycan/G00027MO | denotes | N-glycans |
| T6 | 1441-1450 | http://rdf.glycoinfo.org/glycan/G00027MO | denotes | N-glycans |
| T7 | 546-558 | http://rdf.glycoinfo.org/glycan/G00028MO | denotes | high-mannose |
| T8 | 1073-1085 | http://rdf.glycoinfo.org/glycan/G00028MO | denotes | high-mannose |
| T9 | 1350-1362 | http://rdf.glycoinfo.org/glycan/G00028MO | denotes | high-mannose |
Lectin
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| Lectin_T1 | 1023-1028 | https://acgg.asia/db/lfdb/LfDB0231 | denotes | RCA-I |
performance-test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| PD-UBERON-AE-B_T1 | 41-46 | http://purl.obolibrary.org/obo/UBERON_0001977 | denotes | serum |
| PD-UBERON-AE-B_T2 | 58-63 | http://purl.obolibrary.org/obo/UBERON_0001977 | denotes | serum |
| PD-UBERON-AE-B_T3 | 412-417 | http://purl.obolibrary.org/obo/UBERON_0001977 | denotes | serum |
| PD-UBERON-AE-B_T4 | 835-840 | http://purl.obolibrary.org/obo/UBERON_0001977 | denotes | serum |
NCBITAXON
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| T1 | 52-57 | OrganismTaxon | denotes | Avian | 8782 |
| T2 | 367-372 | OrganismTaxon | denotes | avian | 8782 |
| T3 | 1483-1488 | OrganismTaxon | denotes | avian | 8782 |
Anatomy-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 725-730 | Body_part | denotes | molar | http://purl.obolibrary.org/obo/UBERON_0003655 |