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PubMed:14681369 JSONTXT

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Oryza-OGER

Id Subject Object Predicate Lexical cue
T1 4-9 http://purl.obolibrary.org/obo/SO_0000584 denotes tmRNA
T2 4-9 http://id.nlm.nih.gov/mesh/C096222 denotes tmRNA
T3 42-47 http://purl.obolibrary.org/obo/SO_0000584 denotes tmRNA
T4 42-47 http://id.nlm.nih.gov/mesh/C096222 denotes tmRNA
T5 60-63 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T6 60-63 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T7 64-69 http://www.ncbi.nlm.nih.gov/taxonomy/32644 denotes other
T8 85-90 http://purl.obolibrary.org/obo/SO_0000584 denotes tmRNA
T9 85-90 http://id.nlm.nih.gov/mesh/C096222 denotes tmRNA
T10 100-104 http://purl.obolibrary.org/obo/CHEBI_17843 denotes tRNA
T11 100-104 http://purl.obolibrary.org/obo/SO_0000253 denotes tRNA
T12 100-104 http://id.nlm.nih.gov/mesh/D012343 denotes tRNA
T13 100-104 http://purl.obolibrary.org/obo/GO_0030533 denotes tRNA
T14 106-109 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T15 106-109 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T16 110-114 http://id.nlm.nih.gov/mesh/D012333 denotes mRNA
T17 110-114 http://purl.obolibrary.org/obo/SO_0000234 denotes mRNA
T18 110-114 http://purl.obolibrary.org/obo/CHEBI_33699 denotes mRNA
T19 131-134 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T20 131-134 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T21 225-228 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T22 225-228 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T23 240-245 http://purl.obolibrary.org/obo/SO_0000584 denotes tmRNA
T24 240-245 http://id.nlm.nih.gov/mesh/C096222 denotes tmRNA
T25 263-268 http://purl.obolibrary.org/obo/SO_0000584 denotes tmRNA
T26 263-268 http://id.nlm.nih.gov/mesh/C096222 denotes tmRNA
T27 303-308 http://purl.obolibrary.org/obo/SO_0000584 denotes tmrna
T28 303-308 http://id.nlm.nih.gov/mesh/C096222 denotes tmrna
T29 313-323 http://www.ncbi.nlm.nih.gov/taxonomy/1768868 denotes collection
T30 371-374 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T31 371-374 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T32 375-380 http://www.ncbi.nlm.nih.gov/taxonomy/32644 denotes other
T33 402-406 http://purl.obolibrary.org/obo/PR_000023162 denotes many
T34 402-406 http://purl.obolibrary.org/obo/PR_P69801 denotes many
T35 426-429 http://purl.obolibrary.org/obo/SO_0001180 denotes are
T36 426-429 http://purl.obolibrary.org/obo/SO_0001853 denotes are
T37 430-433 http://purl.obolibrary.org/obo/PR_Q9VVR1 denotes not
T38 430-433 http://purl.obolibrary.org/obo/PR_000011409 denotes not
T39 430-433 http://purl.obolibrary.org/obo/PR_P43354 denotes not
T40 430-433 http://purl.obolibrary.org/obo/PR_000003944 denotes not
T41 430-433 http://purl.obolibrary.org/obo/PR_Q5TIS6 denotes not
T42 430-433 http://purl.obolibrary.org/obo/PR_Q92685 denotes not
T43 430-433 http://purl.obolibrary.org/obo/PR_Q8K2A8 denotes not
T44 430-433 http://purl.obolibrary.org/obo/PR_000011336 denotes not
T45 461-464 http://www.uniprot.org/uniprot/Q7CZN9 denotes has
T46 461-464 http://www.uniprot.org/uniprot/B9JD11 denotes has
T47 461-464 http://purl.obolibrary.org/obo/PR_Q92839 denotes has
T48 461-464 http://www.uniprot.org/uniprot/B2S532 denotes has
T49 461-464 http://www.uniprot.org/uniprot/B7HMD0 denotes has
T50 461-464 http://www.uniprot.org/uniprot/Q2K9W9 denotes has
T51 461-464 http://www.uniprot.org/uniprot/A4ILW9 denotes has
T52 461-464 http://www.uniprot.org/uniprot/C0RIC2 denotes has
T53 461-464 http://www.uniprot.org/uniprot/A0AKG4 denotes has
T54 461-464 http://www.uniprot.org/uniprot/A5EKD5 denotes has
T55 461-464 http://www.uniprot.org/uniprot/Q2GCS4 denotes has
T56 461-464 http://www.uniprot.org/uniprot/C1EPW0 denotes has
T57 461-464 http://www.uniprot.org/uniprot/Q0AIG6 denotes has
T58 461-464 http://www.uniprot.org/uniprot/Q8ER78 denotes has
T59 461-464 http://www.uniprot.org/uniprot/B9DPV8 denotes has
T60 461-464 http://www.uniprot.org/uniprot/B7IVI3 denotes has
T61 461-464 http://www.uniprot.org/uniprot/A0RHW4 denotes has
T62 461-464 http://www.uniprot.org/uniprot/C3MA28 denotes has
T63 461-464 http://www.uniprot.org/uniprot/Q73HV8 denotes has
T64 461-464 http://www.uniprot.org/uniprot/Q5FG54 denotes has
T65 461-464 http://www.uniprot.org/uniprot/A7X127 denotes has
T66 461-464 http://www.uniprot.org/uniprot/A1USH8 denotes has
T67 461-464 http://www.uniprot.org/uniprot/Q635Y0 denotes has
T68 461-464 http://www.uniprot.org/uniprot/B1M282 denotes has
T69 461-464 http://www.uniprot.org/uniprot/Q165T0 denotes has
T70 461-464 http://www.uniprot.org/uniprot/B6IUZ7 denotes has
T71 461-464 http://www.uniprot.org/uniprot/A6X1W1 denotes has
T72 461-464 http://www.uniprot.org/uniprot/P94346 denotes has
T73 461-464 http://www.uniprot.org/uniprot/A9MAG4 denotes has
T74 461-464 http://www.uniprot.org/uniprot/C4L5D6 denotes has
T75 461-464 http://web.expasy.org/cellosaurus/CVCL_E689 denotes has
T76 461-464 http://www.uniprot.org/uniprot/Q1RJX8 denotes has
T77 461-464 http://www.uniprot.org/uniprot/A5VF68 denotes has
T78 461-464 http://www.uniprot.org/uniprot/B9EB26 denotes has
T79 461-464 http://www.uniprot.org/uniprot/B7JK34 denotes has
T80 461-464 http://www.uniprot.org/uniprot/A1B8C2 denotes has
T81 461-464 http://www.uniprot.org/uniprot/Q5PBP7 denotes has
T82 461-464 http://www.uniprot.org/uniprot/Q1GGZ8 denotes has
T83 461-464 http://www.uniprot.org/uniprot/Q71XV6 denotes has
T84 461-464 http://www.uniprot.org/uniprot/P12946 denotes has
T85 461-464 http://www.uniprot.org/uniprot/B9IW25 denotes has
T86 461-464 http://www.uniprot.org/uniprot/Q4FLV1 denotes has
T87 461-464 http://www.uniprot.org/uniprot/Q6HEL8 denotes has
T88 461-464 http://www.uniprot.org/uniprot/C3LI12 denotes has
T89 461-464 http://www.uniprot.org/uniprot/A5IS02 denotes has
T90 461-464 http://www.uniprot.org/uniprot/Q82X64 denotes has
T91 461-464 http://www.uniprot.org/uniprot/Q67L43 denotes has
T92 461-464 http://www.uniprot.org/uniprot/A5FA69 denotes has
T93 461-464 http://www.uniprot.org/uniprot/Q9ZDR8 denotes has
T94 461-464 http://www.uniprot.org/uniprot/Q6N660 denotes has
T95 461-464 http://www.uniprot.org/uniprot/A5VPX0 denotes has
T96 461-464 http://www.uniprot.org/uniprot/B0BWT1 denotes has
T97 461-464 http://www.uniprot.org/uniprot/Q07MP8 denotes has
T98 461-464 http://www.uniprot.org/uniprot/Q11J69 denotes has
T99 461-464 http://www.uniprot.org/uniprot/A8F119 denotes has
T100 461-464 http://www.uniprot.org/uniprot/Q6GHX0 denotes has
T101 461-464 http://www.uniprot.org/uniprot/Q1GWK6 denotes has
T102 461-464 http://www.uniprot.org/uniprot/A7HXA1 denotes has
T103 461-464 http://www.uniprot.org/uniprot/Q5LRS1 denotes has
T104 461-464 http://www.uniprot.org/uniprot/A7Z4B0 denotes has
T105 461-464 http://www.uniprot.org/uniprot/Q3SSR2 denotes has
T106 461-464 http://www.uniprot.org/uniprot/Q6G3L5 denotes has
T107 461-464 http://www.uniprot.org/uniprot/Q8YGI7 denotes has
T108 461-464 http://www.uniprot.org/uniprot/B9KHM9 denotes has
T109 461-464 http://www.uniprot.org/uniprot/Q2Y9R4 denotes has
T110 461-464 http://www.uniprot.org/uniprot/B0T0S6 denotes has
T111 461-464 http://www.uniprot.org/uniprot/Q6G011 denotes has
T112 461-464 http://www.uniprot.org/uniprot/B2IH44 denotes has
T113 461-464 http://www.uniprot.org/uniprot/A6U0T3 denotes has
T114 461-464 http://www.uniprot.org/uniprot/Q2YNB0 denotes has
T115 461-464 http://www.uniprot.org/uniprot/B7H6T3 denotes has
T116 461-464 http://www.uniprot.org/uniprot/B1HPV0 denotes has
T117 461-464 http://www.uniprot.org/uniprot/Q819N0 denotes has
T118 461-464 http://www.uniprot.org/uniprot/Q92QR8 denotes has
T119 461-464 http://web.expasy.org/cellosaurus/CVCL_6758 denotes has
T120 461-464 http://www.uniprot.org/uniprot/A7GRX4 denotes has
T121 461-464 http://purl.obolibrary.org/obo/PR_000008449 denotes has
T122 461-464 http://www.uniprot.org/uniprot/B0CLB4 denotes has
T123 461-464 http://www.uniprot.org/uniprot/A7ING5 denotes has
T124 461-464 http://www.uniprot.org/uniprot/Q5WFD1 denotes has
T125 461-464 http://www.uniprot.org/uniprot/Q89KD9 denotes has
T126 461-464 http://www.uniprot.org/uniprot/B1ZGD8 denotes has
T127 461-464 http://www.uniprot.org/uniprot/A8EY08 denotes has
T128 461-464 http://www.uniprot.org/uniprot/Q04443 denotes has
T129 461-464 http://www.uniprot.org/uniprot/Q0APH6 denotes has
T130 461-464 http://www.uniprot.org/uniprot/A8LK55 denotes has
T131 461-464 http://www.uniprot.org/uniprot/B1YIW6 denotes has
T132 461-464 http://www.uniprot.org/uniprot/Q92IS7 denotes has
T133 461-464 http://www.uniprot.org/uniprot/Q81MT7 denotes has
T134 461-464 http://www.uniprot.org/uniprot/Q2FHW5 denotes has
T135 461-464 http://www.uniprot.org/uniprot/B8DH71 denotes has
T136 461-464 http://www.uniprot.org/uniprot/Q2N6M9 denotes has
T137 461-464 http://www.uniprot.org/uniprot/B0UR12 denotes has
T138 461-464 http://www.uniprot.org/uniprot/Q2GLK1 denotes has
T139 461-464 http://www.uniprot.org/uniprot/Q0BZT0 denotes has
T140 461-464 http://www.uniprot.org/uniprot/Q8Y5K2 denotes has
T141 461-464 http://www.uniprot.org/uniprot/Q2GHG8 denotes has
T142 461-464 http://www.uniprot.org/uniprot/A8Z1Q0 denotes has
T143 461-464 http://www.uniprot.org/uniprot/B8ISP2 denotes has
T144 461-464 http://www.uniprot.org/uniprot/Q57DW5 denotes has
T145 461-464 http://www.uniprot.org/uniprot/Q5HQ52 denotes has
T146 461-464 http://www.uniprot.org/uniprot/Q3YRB4 denotes has
T147 461-464 http://www.uniprot.org/uniprot/Q4L5C9 denotes has
T148 461-464 http://www.uniprot.org/uniprot/B3CRU7 denotes has
T149 461-464 http://www.uniprot.org/uniprot/B9JVB6 denotes has
T150 461-464 http://www.uniprot.org/uniprot/A9W350 denotes has
T151 461-464 http://www.uniprot.org/uniprot/Q7A160 denotes has
T152 461-464 http://www.uniprot.org/uniprot/Q5GSI0 denotes has
T153 461-464 http://www.uniprot.org/uniprot/A4YVQ0 denotes has
T154 461-464 http://www.uniprot.org/uniprot/Q0BQ20 denotes has
T155 461-464 http://www.uniprot.org/uniprot/A8FCU5 denotes has
T156 461-464 http://www.uniprot.org/uniprot/A9VUA7 denotes has
T157 461-464 http://www.uniprot.org/uniprot/A6H039 denotes has
T158 461-464 http://www.uniprot.org/uniprot/Q5L115 denotes has
T159 461-464 http://www.uniprot.org/uniprot/Q2G350 denotes has
T160 461-464 http://www.uniprot.org/uniprot/B8H551 denotes has
T161 461-464 http://www.uniprot.org/uniprot/B3PVH0 denotes has
T162 461-464 http://www.uniprot.org/uniprot/Q3IXW9 denotes has
T163 461-464 http://www.uniprot.org/uniprot/Q2W552 denotes has
T164 461-464 http://www.uniprot.org/uniprot/B3CLF8 denotes has
T165 461-464 http://www.uniprot.org/uniprot/Q8CPM2 denotes has
T166 461-464 http://www.uniprot.org/uniprot/C0R5T8 denotes has
T167 461-464 http://www.uniprot.org/uniprot/B7KV80 denotes has
T168 461-464 http://www.uniprot.org/uniprot/Q5HAH7 denotes has
T169 461-464 http://www.uniprot.org/uniprot/Q2G2C0 denotes has
T170 461-464 http://www.uniprot.org/uniprot/Q7A2S8 denotes has
T171 461-464 http://www.uniprot.org/uniprot/C3P6V3 denotes has
T172 461-464 http://www.uniprot.org/uniprot/A8I7Y5 denotes has
T173 461-464 http://www.uniprot.org/uniprot/A3PQK0 denotes has
T174 461-464 http://www.uniprot.org/uniprot/B9KW13 denotes has
T175 461-464 http://www.uniprot.org/uniprot/Q929V9 denotes has
T176 461-464 http://www.uniprot.org/uniprot/A8GMQ9 denotes has
T177 461-464 http://www.uniprot.org/uniprot/A9HEV3 denotes has
T178 461-464 http://www.uniprot.org/uniprot/A5CF77 denotes has
T179 461-464 http://www.uniprot.org/uniprot/A9IVC8 denotes has
T180 461-464 http://www.uniprot.org/uniprot/Q5HGW9 denotes has
T181 461-464 http://purl.obolibrary.org/obo/PR_Q61647 denotes has
T182 461-464 http://www.uniprot.org/uniprot/Q1MIP9 denotes has
T183 461-464 http://www.uniprot.org/uniprot/A4WZ55 denotes has
T184 461-464 http://www.uniprot.org/uniprot/Q9K9M8 denotes has
T185 461-464 http://www.uniprot.org/uniprot/Q65K14 denotes has
T186 461-464 http://www.uniprot.org/uniprot/Q49WP0 denotes has
T187 461-464 http://www.uniprot.org/uniprot/Q28PL3 denotes has
T188 461-464 http://www.uniprot.org/uniprot/A8GRD0 denotes has
T189 461-464 http://www.uniprot.org/uniprot/Q8G1D1 denotes has
T190 461-464 http://www.uniprot.org/uniprot/A6QFX0 denotes has
T191 461-464 http://www.uniprot.org/uniprot/Q2YX60 denotes has
T192 461-464 http://www.uniprot.org/uniprot/Q2IWP3 denotes has
T193 461-464 http://www.uniprot.org/uniprot/Q214F0 denotes has
T194 461-464 http://www.uniprot.org/uniprot/Q982X5 denotes has
T195 461-464 http://www.uniprot.org/uniprot/B3QKF4 denotes has
T196 461-464 http://www.uniprot.org/uniprot/Q732C1 denotes has
T197 461-464 http://purl.obolibrary.org/obo/CHEBI_73878 denotes has
T198 461-464 http://www.uniprot.org/uniprot/Q6GA99 denotes has
T199 461-464 http://www.uniprot.org/uniprot/Q4UKQ2 denotes has
T200 461-464 http://www.uniprot.org/uniprot/A8GXM1 denotes has
T201 461-464 http://www.uniprot.org/uniprot/B5ZXY9 denotes has
T202 461-464 http://www.uniprot.org/uniprot/Q136Q9 denotes has
T203 461-464 http://www.uniprot.org/uniprot/A6U7T3 denotes has
T204 461-464 http://www.uniprot.org/uniprot/Q9A8H9 denotes has
T205 461-464 http://www.uniprot.org/uniprot/Q7A665 denotes has
T206 461-464 http://www.uniprot.org/uniprot/C3PMV5 denotes has
T207 461-464 http://www.uniprot.org/uniprot/C1KX11 denotes has
T208 461-464 http://www.uniprot.org/uniprot/Q1QKJ7 denotes has
T209 525-528 http://purl.obolibrary.org/obo/PR_Q9NZC7 denotes for
T210 525-528 http://purl.obolibrary.org/obo/PR_000001036 denotes for
T211 533-537 http://purl.obolibrary.org/obo/CHEBI_17843 denotes tRNA
T212 533-537 http://purl.obolibrary.org/obo/SO_0000253 denotes tRNA
T213 533-537 http://id.nlm.nih.gov/mesh/D012343 denotes tRNA
T214 533-537 http://purl.obolibrary.org/obo/GO_0030533 denotes tRNA
T215 543-549 http://purl.obolibrary.org/obo/SO_0000417 denotes domain
T216 556-560 http://purl.obolibrary.org/obo/PR_000023162 denotes Many
T217 556-560 http://purl.obolibrary.org/obo/PR_P69801 denotes Many
T218 561-566 http://purl.obolibrary.org/obo/SO_0000584 denotes tmRNA
T219 561-566 http://id.nlm.nih.gov/mesh/C096222 denotes tmRNA
T220 629-637 http://purl.obolibrary.org/obo/SO_0000001 denotes sequence
T221 643-646 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T222 643-646 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T223 671-677 http://purl.obolibrary.org/obo/SO_0001514 denotes direct
T224 740-747 http://purl.obolibrary.org/obo/GO_0009536 denotes plastid
T225 775-778 http://purl.obolibrary.org/obo/UBERON_0014899 denotes all
T226 775-778 http://id.nlm.nih.gov/mesh/D054198 denotes all
T227 775-778 http://purl.obolibrary.org/obo/CHEBI_37690 denotes all
T228 793-800 http://purl.obolibrary.org/obo/GO_0009536 denotes plastid
T229 856-861 http://purl.obolibrary.org/obo/SO_0000584 denotes tmRNA
T230 856-861 http://id.nlm.nih.gov/mesh/C096222 denotes tmRNA
T231 862-870 http://purl.obolibrary.org/obo/SO_0000001 denotes sequence
T232 915-925 http://purl.obolibrary.org/obo/SO_0000591 denotes pseudoknot
T233 926-934 http://purl.obolibrary.org/obo/SO_0001635 denotes upstream
T234 942-946 http://id.nlm.nih.gov/mesh/D012333 denotes mRNA
T235 942-946 http://purl.obolibrary.org/obo/SO_0000234 denotes mRNA
T236 942-946 http://purl.obolibrary.org/obo/CHEBI_33699 denotes mRNA
T237 947-954 http://purl.obolibrary.org/obo/UBERON_0000914 denotes segment
T238 955-958 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T239 955-958 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T240 997-1007 http://purl.obolibrary.org/obo/SO_0001633 denotes downstream
T241 1009-1016 http://purl.obolibrary.org/obo/GO_0009536 denotes plastid
T242 1042-1046 http://purl.obolibrary.org/obo/SO_0001743 denotes loss
T243 1084-1094 http://purl.obolibrary.org/obo/SO_0000591 denotes pseudoknot
T244 1102-1108 http://purl.obolibrary.org/obo/SO_0000839 denotes region
T245 1102-1108 http://purl.obolibrary.org/obo/SO_0000001 denotes region
T246 1148-1158 http://purl.obolibrary.org/obo/SO_0000591 denotes pseudoknot
T247 1192-1197 http://purl.obolibrary.org/obo/SO_0000584 denotes tmRNA
T248 1192-1197 http://id.nlm.nih.gov/mesh/C096222 denotes tmRNA
T249 1198-1206 http://purl.obolibrary.org/obo/SO_0000001 denotes sequence
T250 1240-1246 http://id.nlm.nih.gov/mesh/D007313 denotes insect
T251 1254-1272 http://www.ncbi.nlm.nih.gov/taxonomy/189385 denotes Tremblaya princeps
T252 1286-1289 http://web.expasy.org/cellosaurus/CVCL_E773 denotes may
T253 1299-1304 http://purl.obolibrary.org/obo/SO_0000584 denotes tmRNA
T254 1299-1304 http://id.nlm.nih.gov/mesh/C096222 denotes tmRNA
T255 1317-1321 http://purl.obolibrary.org/obo/SO_0001516 denotes free
T256 1329-1337 http://id.nlm.nih.gov/mesh/D001419 denotes bacteria
T257 1422-1425 http://purl.obolibrary.org/obo/PR_Q9NZC7 denotes for
T258 1422-1425 http://purl.obolibrary.org/obo/PR_000001036 denotes for
T259 1426-1430 http://purl.obolibrary.org/obo/GO_0033867 denotes fast
T260 1431-1437 http://purl.obolibrary.org/obo/GO_0040007 denotes growth

OryzaGP_2021

Id Subject Object Predicate Lexical cue
M_0 1254-1272 hunflair:NA:Species denotes Tremblaya princeps

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 1254-1272 hunflair:NA:Species denotes Tremblaya princeps

OryzaGP

Id Subject Object Predicate Lexical cue
T1 100-104 gene denotes tRNA

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-84 Sentence denotes The tmRNA website: reductive evolution of tmRNA in plastids and other endosymbionts.
T2 85-187 Sentence denotes tmRNA combines tRNA- and mRNA-like properties and ameliorates problems arising from stalled ribosomes.
T3 188-393 Sentence denotes Research on the mechanism, structure and biology of tmRNA is served by the tmRNA website (http://www.indiana.edu/~ tmrna), a collection of sequences, alignments, secondary structures and other information.
T4 394-555 Sentence denotes Because many of these sequences are not in GenBank, a BLAST server has been added; another new feature is an abbreviated alignment for the tRNA-like domain only.
T5 556-810 Sentence denotes Many tmRNA sequences from plastids have been added, five found in public sequence data and another 10 generated by direct sequencing; detection in early-branching members of the green plastid lineage brings coverage to all three primary plastid lineages.
T6 811-871 Sentence denotes The new sequences include the shortest known tmRNA sequence.
T7 872-1079 Sentence denotes While bacterial tmRNAs usually have a lone pseudoknot upstream of the mRNA segment and a string of three or four pseudoknots downstream, plastid tmRNAs collectively show loss of pseudoknots at both postions.
T8 1080-1273 Sentence denotes The pseudoknot-string region is also too short to contain the usual pseudoknot number in another new entry, the tmRNA sequence from a bacterial endosymbiont of insect cells, Tremblaya princeps.
T9 1274-1438 Sentence denotes Pseudoknots may optimize tmRNA function in free-living bacteria, yet become dispensible when the endosymbiotic lifestyle relaxes selective pressure for fast growth.

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-84 Sentence denotes The tmRNA website: reductive evolution of tmRNA in plastids and other endosymbionts.
T2 85-187 Sentence denotes tmRNA combines tRNA- and mRNA-like properties and ameliorates problems arising from stalled ribosomes.
T3 188-393 Sentence denotes Research on the mechanism, structure and biology of tmRNA is served by the tmRNA website (http://www.indiana.edu/~ tmrna), a collection of sequences, alignments, secondary structures and other information.
T4 394-555 Sentence denotes Because many of these sequences are not in GenBank, a BLAST server has been added; another new feature is an abbreviated alignment for the tRNA-like domain only.
T5 556-810 Sentence denotes Many tmRNA sequences from plastids have been added, five found in public sequence data and another 10 generated by direct sequencing; detection in early-branching members of the green plastid lineage brings coverage to all three primary plastid lineages.
T6 811-871 Sentence denotes The new sequences include the shortest known tmRNA sequence.
T7 872-1079 Sentence denotes While bacterial tmRNAs usually have a lone pseudoknot upstream of the mRNA segment and a string of three or four pseudoknots downstream, plastid tmRNAs collectively show loss of pseudoknots at both postions.
T8 1080-1273 Sentence denotes The pseudoknot-string region is also too short to contain the usual pseudoknot number in another new entry, the tmRNA sequence from a bacterial endosymbiont of insect cells, Tremblaya princeps.
T9 1274-1438 Sentence denotes Pseudoknots may optimize tmRNA function in free-living bacteria, yet become dispensible when the endosymbiotic lifestyle relaxes selective pressure for fast growth.

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-84 Sentence denotes The tmRNA website: reductive evolution of tmRNA in plastids and other endosymbionts.
T2 85-187 Sentence denotes tmRNA combines tRNA- and mRNA-like properties and ameliorates problems arising from stalled ribosomes.
T3 188-393 Sentence denotes Research on the mechanism, structure and biology of tmRNA is served by the tmRNA website (http://www.indiana.edu/~ tmrna), a collection of sequences, alignments, secondary structures and other information.
T4 394-555 Sentence denotes Because many of these sequences are not in GenBank, a BLAST server has been added; another new feature is an abbreviated alignment for the tRNA-like domain only.
T5 556-810 Sentence denotes Many tmRNA sequences from plastids have been added, five found in public sequence data and another 10 generated by direct sequencing; detection in early-branching members of the green plastid lineage brings coverage to all three primary plastid lineages.
T6 811-871 Sentence denotes The new sequences include the shortest known tmRNA sequence.
T7 872-1079 Sentence denotes While bacterial tmRNAs usually have a lone pseudoknot upstream of the mRNA segment and a string of three or four pseudoknots downstream, plastid tmRNAs collectively show loss of pseudoknots at both postions.
T8 1080-1273 Sentence denotes The pseudoknot-string region is also too short to contain the usual pseudoknot number in another new entry, the tmRNA sequence from a bacterial endosymbiont of insect cells, Tremblaya princeps.
T9 1274-1438 Sentence denotes Pseudoknots may optimize tmRNA function in free-living bacteria, yet become dispensible when the endosymbiotic lifestyle relaxes selective pressure for fast growth.

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-84 Sentence denotes The tmRNA website: reductive evolution of tmRNA in plastids and other endosymbionts.
T2 85-187 Sentence denotes tmRNA combines tRNA- and mRNA-like properties and ameliorates problems arising from stalled ribosomes.
T3 188-393 Sentence denotes Research on the mechanism, structure and biology of tmRNA is served by the tmRNA website (http://www.indiana.edu/~ tmrna), a collection of sequences, alignments, secondary structures and other information.
T4 394-555 Sentence denotes Because many of these sequences are not in GenBank, a BLAST server has been added; another new feature is an abbreviated alignment for the tRNA-like domain only.
T5 556-810 Sentence denotes Many tmRNA sequences from plastids have been added, five found in public sequence data and another 10 generated by direct sequencing; detection in early-branching members of the green plastid lineage brings coverage to all three primary plastid lineages.
T6 811-871 Sentence denotes The new sequences include the shortest known tmRNA sequence.
T7 872-1079 Sentence denotes While bacterial tmRNAs usually have a lone pseudoknot upstream of the mRNA segment and a string of three or four pseudoknots downstream, plastid tmRNAs collectively show loss of pseudoknots at both postions.
T8 1080-1273 Sentence denotes The pseudoknot-string region is also too short to contain the usual pseudoknot number in another new entry, the tmRNA sequence from a bacterial endosymbiont of insect cells, Tremblaya princeps.
T9 1274-1438 Sentence denotes Pseudoknots may optimize tmRNA function in free-living bacteria, yet become dispensible when the endosymbiotic lifestyle relaxes selective pressure for fast growth.