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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 0-27 DNA denotes SRC-related proto-oncogenes
T2 32-53 protein denotes transcription factors
T3 65-78 cell_type denotes human T cells
T4 133-146 cell_type denotes T lymphocytes
T5 172-177 DNA denotes genes
T6 191-202 protein denotes lymphokines
T7 204-229 DNA denotes Interleukin-2 (IL-2) gene
T8 313-337 protein denotes trans-activating factors
T9 355-368 DNA denotes IL-2 enhancer
T10 426-430 protein denotes IL-2
T11 434-447 cell_type denotes T lymphocytes
T12 500-515 DNA denotes src gene family
T13 521-564 protein denotes lymphocyte-specific protein tyrosine kinase
T14 566-572 protein denotes p56lck
T15 597-601 protein denotes IL-2
T16 643-646 protein denotes lck
T17 688-696 DNA denotes lck gene
T18 804-809 DNA denotes NF-AT
T19 814-824 DNA denotes AP-1 sites
T20 832-845 DNA denotes IL-2 enhancer
T21 870-875 protein denotes NF-AT
T22 880-884 protein denotes AP-1
T23 931-935 protein denotes IL-2
T24 1055-1079 protein denotes trans-activating factors

semrep-sample

Id Subject Object Predicate Lexical cue
E1-ti-1 0-3 cui:C0080059 denotes SRC
E2-ti-1 4-11 cui:C1522149 denotes related
E3-ti-1 12-27 cui:C0033713 denotes proto-oncogenes
E4-ti-1 32-53 cui:C0040648 denotes transcription factors
E5-ti-1 65-70 cui:C0020114 denotes human
E6-ti-1 71-78 cui:C0039194 denotes T cells
E7-ti-1 94-107 cui:C0010592 denotes cyclosporin A
E8-ti-1 112-117 cui:C0729218 denotes FK506
T1 65-78 PART_OF denotes human T cells
T2 54-56 LOCATION_OF denotes in
T3 54-56 LOCATION_OF denotes in
E1-ab-1 133-146 cui:C0039194 denotes T lymphocytes
E2-ab-1 155-168 cui:C0040649 denotes transcription
E3-ab-1 172-177 cui:C0017337 denotes genes
E4-ab-1 191-202 cui:C0024297 denotes lymphokines
E1-ab-2 204-229 cui:C0879590 denotes Interleukin-2 (IL-2) gene
E2-ab-2 230-240 cui:C0185117 denotes expression
E3-ab-2 280-291 cui:C0679729 denotes cooperative
E4-ab-2 292-300 cui:C0439167 denotes activity
E5-ab-2 330-337 cui:C1521761 denotes factors
E6-ab-2 355-359 cui:C0021756 denotes IL-2
E7-ab-2 360-368 cui:C0086222 denotes enhancer
T4 343-347 INTERACTS_WITH denotes bind
E1-ab-3 370-383 cui:C0010592 denotes Cyclosporin A
E2-ab-3 394-399 cui:C0729218 denotes FK506
E3-ab-3 412-422 cui:C0033268 denotes production
E4-ab-3 426-430 cui:C0021756 denotes IL-2
E5-ab-3 434-447 cui:C0039194 denotes T lymphocytes
E6-ab-3 464-482 cui:C0040649 denotes gene transcription
T5 400-407 INHIBITS denotes inhibit
T6 400-407 INHIBITS denotes inhibit
T7 431-433 LOCATION_OF denotes in
E1-ab-4 486-492 cui:C0680022 denotes member
E2-ab-4 500-503 cui:C0080059 denotes src
E3-ab-4 504-515 cui:C1517488 denotes gene family
E4-ab-4 521-564 cui:C0065344 denotes lymphocyte-specific protein tyrosine kinase
E5-ab-4 566-572 entrez:3932 denotes p56lck
E6-ab-4 597-601 cui:C0021756 denotes IL-2
E7-ab-4 602-612 cui:C0033268 denotes production
T8 583-593 INTERACTS_WITH denotes implicated
E1-ab-5 614-617 cui:C0010592 denotes CsA
E2-ab-5 628-631 cui:C1518422 denotes not
E3-ab-5 643-646 cui:C0065344 denotes lck
E4-ab-5 647-662 cui:C0017262 denotes gene expression
E5-ab-5 672-680 cui:C0439167 denotes activity
E6-ab-5 688-691 cui:C0065344 denotes lck
E7-ab-5 692-704 cui:C0033684 denotes gene product
T9 688-704 ISA denotes lck gene product
T10 635-642 INHIBITS denotes inhibit
E1-ab-6 715-718 cui:C0010592 denotes CsA
E2-ab-6 723-728 cui:C0729218 denotes FK506
E3-ab-6 741-751 cui:C0700364 denotes appearance
E4-ab-6 755-766 cui:C1148673 denotes DNA binding
E5-ab-6 767-775 cui:C0439167 denotes activity
E6-ab-6 779-786 cui:C1521761 denotes factors
E7-ab-6 814-818 cui:C0002059 denotes AP-1
E8-ab-6 819-824 cui:C0205145 denotes sites
E9-ab-6 832-836 cui:C0021756 denotes IL-2
E10-ab-6 837-845 cui:C0086222 denotes enhancer
E1-ab-7 857-866 cui:C0857127 denotes induction
E2-ab-7 880-884 cui:C0002059 denotes AP-1
E3-ab-7 903-907 cui:C0445247 denotes same
E4-ab-7 908-915 cui:C0234402 denotes stimuli
E5-ab-7 931-935 cui:C0021756 denotes IL-2
E6-ab-7 936-946 cui:C0033268 denotes production
E7-ab-7 954-961 cui:C1274040 denotes results
E8-ab-7 980-997 cui:C0021081 denotes immunosuppressant
E9-ab-7 1008-1011 cui:C0010592 denotes CsA
E10-ab-7 1016-1021 cui:C0729218 denotes FK506
E11-ab-7 1072-1079 cui:C1521761 denotes factors
T11 921-930 STIMULATES denotes stimulate
R1 E6-ti-1 T1 subjectOf T cells,human T cells
R2 E5-ti-1 T1 objectOf human,human T cells
R3 E6-ti-1 T2 subjectOf T cells,in
R4 E4-ti-1 T2 objectOf transcription factors,in
R5 E6-ti-1 T3 subjectOf T cells,in
R6 E3-ti-1 T3 objectOf proto-oncogenes,in
R7 E1-ab-2 T4 subjectOf Interleukin-2 (IL-2) gene,bind
R8 E7-ab-2 T4 objectOf enhancer,bind
R9 E2-ab-3 T5 subjectOf FK506,inhibit
R10 E4-ab-3 T5 objectOf IL-2,inhibit
R11 E1-ab-3 T6 subjectOf Cyclosporin A,inhibit
R12 E4-ab-3 T6 objectOf IL-2,inhibit
R13 E5-ab-3 T7 subjectOf T lymphocytes,in
R14 E4-ab-3 T7 objectOf IL-2,in
R15 E5-ab-4 T8 subjectOf p56lck,implicated
R16 E6-ab-4 T8 objectOf IL-2,implicated
R17 E6-ab-5 T9 subjectOf lck,lck gene product
R18 E7-ab-5 T9 objectOf gene product,lck gene product
R19 E1-ab-5 T10 subjectOf CsA,inhibit
R20 E3-ab-5 T10 objectOf lck,inhibit
R21 E2-ab-7 T11 subjectOf AP-1,stimulate
R22 E5-ab-7 T11 objectOf IL-2,stimulate

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-118 Sentence denotes SRC-related proto-oncogenes and transcription factors in primary human T cells: modulation by cyclosporin A and FK506.
S2 119-203 Sentence denotes Activation of T lymphocytes induces transcription of genes encoding for lymphokines.
S3 204-369 Sentence denotes Interleukin-2 (IL-2) gene expression is controlled transcriptionally by the cooperative activity of specific trans-activating factors that bind to the IL-2 enhancer.
S4 370-483 Sentence denotes Cyclosporin A (CsA) and FK506 inhibit the production of IL-2 in T lymphocytes at the level of gene transcription.
S5 484-613 Sentence denotes A member of the src gene family, the lymphocyte-specific protein tyrosine kinase, p56lck, has been implicated in IL-2 production.
S6 614-705 Sentence denotes CsA was found not to inhibit lck gene expression, nor the activity of the lck gene product.
S7 706-846 Sentence denotes However, CsA and FK506 inhibit the appearance of DNA binding activity of factors that bind to the NF-AT and AP-1 sites in the IL-2 enhancer.
S8 847-1080 Sentence denotes Since the induction of NF-AT and AP-1 is induced by the same stimuli that stimulate IL-2 production, these results indicate that the immunosuppressant action of CsA and FK506 is exerted at the level of these trans-activating factors.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 32-53 NP denotes transcription factors
C2 57-78 NP denotes primary human T cells
C3 94-107 NP denotes cyclosporin A
C4 112-117 NP denotes FK506
C5 133-146 NP denotes T lymphocytes
C6 204-224 NP denotes Interleukin-2 (IL-2)
C7 304-337 NP denotes specific trans-activating factors
C8 338-342 NP denotes that
C9 351-368 NP denotes the IL-2 enhancer
C10 370-389 NP denotes Cyclosporin A (CsA)
C11 394-399 NP denotes FK506
C12 426-430 NP denotes IL-2
C13 434-447 NP denotes T lymphocytes
C14 484-515 NP denotes A member of the src gene family
C15 517-564 NP denotes the lymphocyte-specific protein tyrosine kinase
C16 566-572 NP denotes p56lck
C17 597-612 NP denotes IL-2 production
C18 614-617 NP denotes CsA
C19 715-718 NP denotes CsA
C20 723-728 NP denotes FK506
C21 779-786 NP denotes factors
C22 787-791 NP denotes that
C23 828-845 NP denotes the IL-2 enhancer
C24 899-915 NP denotes the same stimuli
C25 916-920 NP denotes that
C26 931-946 NP denotes IL-2 production
C27 1008-1011 NP denotes CsA
C28 1016-1021 NP denotes FK506
C29 1049-1079 NP denotes these trans-activating factors
R1 C5 C2 coref-other T lymphocytes,primary human T cells
R2 C7 C1 coref-other specific trans-activating factors,transcription factors
R3 C8 C7 coref-relat that,specific trans-activating factors
R4 C10 C3 coref-ident Cyclosporin A (CsA),cyclosporin A
R5 C11 C4 coref-ident FK506,FK506
R6 C12 C6 coref-ident IL-2,Interleukin-2 (IL-2)
R7 C13 C5 coref-ident T lymphocytes,T lymphocytes
R8 C15 C14 coref-appos the lymphocyte-specific protein tyrosine kinase,A member of the src gene family
R9 C16 C15 coref-appos p56lck,the lymphocyte-specific protein tyrosine kinase
R10 C18 C10 coref-ident CsA,Cyclosporin A (CsA)
R11 C19 C18 coref-ident CsA,CsA
R12 C20 C11 coref-ident FK506,FK506
R13 C21 C7 coref-other factors,specific trans-activating factors
R14 C22 C21 coref-relat that,factors
R15 C23 C9 coref-ident the IL-2 enhancer,the IL-2 enhancer
R16 C25 C24 coref-relat that,the same stimuli
R17 C26 C17 coref-ident IL-2 production,IL-2 production
R18 C27 C19 coref-ident CsA,CsA
R19 C28 C20 coref-ident FK506,FK506
R20 C29 C21 coref-other these trans-activating factors,factors

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 0-27 DNA_family_or_group denotes SRC-related proto-oncogenes
T2 32-53 protein_family_or_group denotes transcription factors
T3 65-78 cell_type denotes human T cells
T4 94-107 other_organic_compound denotes cyclosporin A
T5 112-117 other_organic_compound denotes FK506
T6 133-146 cell_type denotes T lymphocytes
T7 172-177 DNA_family_or_group denotes genes
T8 191-202 protein_domain_or_region denotes lymphokines
T9 204-217 protein_molecule denotes Interleukin-2
T10 219-223 protein_molecule denotes IL-2
T11 313-337 protein_family_or_group denotes trans-activating factors
T12 355-359 protein_molecule denotes IL-2
T13 370-383 other_organic_compound denotes Cyclosporin A
T14 385-388 other_organic_compound denotes CsA
T15 394-399 other_organic_compound denotes FK506
T16 426-430 protein_molecule denotes IL-2
T17 434-447 cell_type denotes T lymphocytes
T18 464-482 other_name denotes gene transcription
T19 500-515 DNA_family_or_group denotes src gene family
T20 521-564 protein_molecule denotes lymphocyte-specific protein tyrosine kinase
T21 566-572 protein_molecule denotes p56lck
T22 597-601 protein_molecule denotes IL-2
T23 614-617 other_organic_compound denotes CsA
T24 643-646 protein_molecule denotes lck
T25 688-696 DNA_domain_or_region denotes lck gene
T26 715-718 other_organic_compound denotes CsA
T27 723-728 other_organic_compound denotes FK506
T28 755-775 other_name denotes DNA binding activity
T29 804-809 DNA_domain_or_region denotes NF-AT
T30 814-824 DNA_domain_or_region denotes AP-1 sites
T31 832-836 protein_molecule denotes IL-2
T32 870-875 protein_family_or_group denotes NF-AT
T33 880-884 protein_molecule denotes AP-1
T34 931-935 protein_molecule denotes IL-2
T35 980-1004 other_name denotes immunosuppressant action
T36 1008-1011 other_organic_compound denotes CsA
T37 1016-1021 other_organic_compound denotes FK506
T38 1055-1079 protein_family_or_group denotes trans-activating factors

metamap-sample

Id Subject Object Predicate Lexical cue
T1 66-71 C0086418 denotes uman
T2 13-28 C0033713 denotes roto-oncogenes
T3 1009-1012 C0010592 denotes sA
T4 716-719 C0010592 denotes sA
T5 615-618 C0010592 denotes sA
T6 371-384 C0010592 denotes yclosporin A
T7 95-108 C0010592 denotes yclosporin A
T8 1017-1022 C0729218 denotes K506
T9 724-729 C0729218 denotes K506
T10 395-400 C0729218 denotes K506
T11 113-118 C0729218 denotes K506.
T12 465-483 C0040649 denotes ene transcription.
T13 33-46 C0040649 denotes ranscription
T14 81-91 C0443264 denotes odulation
T15 5-12 C0439849 denotes elated
T16 74-79 C0007634 denotes ells:
T17 58-65 C0205225 denotes rimary
T18 730-737 C0018790 denotes nhibit
T19 636-643 C0018790 denotes nhibit
T20 401-408 C0018790 denotes nhibit
T21 501-516 C0038085 denotes rc gene family,
T22 522-565 C0919477 denotes ymphocyte-specific protein tyrosine kinase,
T23 881-885 C0085828 denotes P-1
T24 192-203 C0024297 denotes ymphokines.
T25 981-998 C0021081 denotes mmunosuppressant
T26 932-947 C1819447 denotes L-2 production,
T27 598-613 C1819447 denotes L-2 production.
T28 889-896 C0205263 denotes nduced
T29 858-867 C0205263 denotes nduction
T30 148-155 C0205263 denotes nduces
T31 1073-1080 C1521761 denotes actors.
T32 780-787 C1521761 denotes actors
T33 331-338 C1521761 denotes actors
T34 648-663 C0017262 denotes ene expression,
T35 756-759 C0012854 denotes NA
T36 1041-1046 C0441889 denotes evel
T37 456-461 C0441889 denotes evel
T38 356-360 C0879590 denotes L-2
T39 653-663 C0185117 denotes xpression,
T40 231-241 C0185117 denotes xpression
T41 793-797 C1167622 denotes ind
T42 344-348 C1167622 denotes ind
T43 673-681 C1561536 denotes ctivity
T44 293-301 C1561536 denotes ctivity
T45 1062-1072 C1879547 denotes ctivating
T46 320-330 C1879547 denotes ctivating
T47 1056-1061 C2826298 denotes rans-
T48 314-319 C2826298 denotes rans-
T49 838-846 C0086222 denotes nhancer.
T50 361-369 C0086222 denotes nhancer.
T51 693-705 C0033684 denotes ene product.
T52 245-255 C2587213 denotes ontrolled
T53 623-628 C0150312 denotes ound
T54 955-962 C2825142 denotes esults
T55 629-632 C1518422 denotes ot
T56 179-187 C2700640 denotes ncoding
T57 904-907 C0445247 denotes ame
T58 909-916 C0234402 denotes timuli
T59 999-1005 C0441472 denotes ction
T60 487-493 C0680022 denotes ember
T61 742-751 C0233426 denotes ppearance
T62 820-825 C0205145 denotes ites
T63 1026-1033 C0015264 denotes xerted
T64 305-313 C0205369 denotes pecific
T65 281-292 C0679729 denotes ooperative
T66 760-776 C2266866 denotes inding activity
T67 698-705 C1514468 denotes roduct.