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PubMed:1379858 JSONTXT

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Glycan-Motif

Id Subject Object Predicate Lexical cue
T1 1036-1055 https://glytoucan.org/Structures/Glycans/G64581RP denotes N-acetylglucosamine
T2 1588-1608 https://glytoucan.org/Structures/Glycans/G64581RP denotes N-acetyl-glucosamine

GlyCosmos6-Glycan-Motif-Image

Id Subject Object Predicate Lexical cue image
T1 1036-1055 Glycan_Motif denotes N-acetylglucosamine https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G64581RP
T2 1588-1608 Glycan_Motif denotes N-acetyl-glucosamine https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G64581RP

GlyCosmos6-Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T1 1036-1055 https://glytoucan.org/Structures/Glycans/G64581RP denotes N-acetylglucosamine
T2 1588-1608 https://glytoucan.org/Structures/Glycans/G64581RP denotes N-acetyl-glucosamine

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-115 Sentence denotes Carbohydrate masking of an antigenic epitope of influenza virus haemagglutinin independent of oligosaccharide size.
TextSentencer_T2 116-314 Sentence denotes Comparison of the haemagglutinins (HA) of the pathogenic avian influenza viruses A/FPV/Dutch/27 (H7N7) and A/FPV/Rostock/34 (H7N1) revealed 94.7% nucleotide and 93.8% amino acid sequence homologies.
TextSentencer_T3 315-451 Sentence denotes Six of the seven N-glycosidic oligosaccharides of the Rostock HA are at the same positions as the six carbohydrates of the Dutch strain.
TextSentencer_T4 452-599 Sentence denotes The additional oligosaccharide side chain of the Rostock strain, which is of the complex type, is attached to asparagine149 in antigenic epitope B.
TextSentencer_T5 600-752 Sentence denotes The accessibility of this antigenic epitope has been analysed by using rabbit antisera raised against synthetic peptides comprising amino acids 143-162.
TextSentencer_T6 753-1145 Sentence denotes The carbohydrates of the HA of the Rostock strain have been modified (i) to truncated cores by expression in insect cells using a baculovirus vector, (ii) to oligomannosidic side chains by growth in the presence of the trimming inhibitor methyldeoxynojirimycin and (iii) to a single N-acetylglucosamine residue by removal of the oligomannosidic sugar with endo-beta-N-acetylglucosaminidase H.
TextSentencer_T7 1146-1312 Sentence denotes Neither the authentic nor the modified oligosaccharides allowed antibody binding, as indicated by enzyme-linked immunosorbent assay (ELISA) and Western blot analyses.
TextSentencer_T8 1313-1462 Sentence denotes Reactivity was observed, however, after complete removal of the carbohydrate from HA of the Rostock strain by digestion with peptide-N-glycosidase F.
TextSentencer_T9 1463-1547 Sentence denotes HA of the Dutch strain was reactive without prior peptide-N-glycosidase F treatment.
TextSentencer_T10 1548-1686 Sentence denotes These results demonstrate that a single N-acetyl-glucosamine at asparagine149 is sufficient to prevent recognition of the peptide epitope.
T1 0-115 Sentence denotes Carbohydrate masking of an antigenic epitope of influenza virus haemagglutinin independent of oligosaccharide size.
T2 116-314 Sentence denotes Comparison of the haemagglutinins (HA) of the pathogenic avian influenza viruses A/FPV/Dutch/27 (H7N7) and A/FPV/Rostock/34 (H7N1) revealed 94.7% nucleotide and 93.8% amino acid sequence homologies.
T3 315-451 Sentence denotes Six of the seven N-glycosidic oligosaccharides of the Rostock HA are at the same positions as the six carbohydrates of the Dutch strain.
T4 452-752 Sentence denotes The additional oligosaccharide side chain of the Rostock strain, which is of the complex type, is attached to asparagine149 in antigenic epitope B. The accessibility of this antigenic epitope has been analysed by using rabbit antisera raised against synthetic peptides comprising amino acids 143-162.
T5 753-1312 Sentence denotes The carbohydrates of the HA of the Rostock strain have been modified (i) to truncated cores by expression in insect cells using a baculovirus vector, (ii) to oligomannosidic side chains by growth in the presence of the trimming inhibitor methyldeoxynojirimycin and (iii) to a single N-acetylglucosamine residue by removal of the oligomannosidic sugar with endo-beta-N-acetylglucosaminidase H. Neither the authentic nor the modified oligosaccharides allowed antibody binding, as indicated by enzyme-linked immunosorbent assay (ELISA) and Western blot analyses.
T6 1313-1547 Sentence denotes Reactivity was observed, however, after complete removal of the carbohydrate from HA of the Rostock strain by digestion with peptide-N-glycosidase F. HA of the Dutch strain was reactive without prior peptide-N-glycosidase F treatment.
T7 1548-1686 Sentence denotes These results demonstrate that a single N-acetyl-glucosamine at asparagine149 is sufficient to prevent recognition of the peptide epitope.
T1 0-115 Sentence denotes Carbohydrate masking of an antigenic epitope of influenza virus haemagglutinin independent of oligosaccharide size.
T2 116-314 Sentence denotes Comparison of the haemagglutinins (HA) of the pathogenic avian influenza viruses A/FPV/Dutch/27 (H7N7) and A/FPV/Rostock/34 (H7N1) revealed 94.7% nucleotide and 93.8% amino acid sequence homologies.
T3 315-451 Sentence denotes Six of the seven N-glycosidic oligosaccharides of the Rostock HA are at the same positions as the six carbohydrates of the Dutch strain.
T4 452-599 Sentence denotes The additional oligosaccharide side chain of the Rostock strain, which is of the complex type, is attached to asparagine149 in antigenic epitope B.
T5 600-752 Sentence denotes The accessibility of this antigenic epitope has been analysed by using rabbit antisera raised against synthetic peptides comprising amino acids 143-162.
T6 753-1145 Sentence denotes The carbohydrates of the HA of the Rostock strain have been modified (i) to truncated cores by expression in insect cells using a baculovirus vector, (ii) to oligomannosidic side chains by growth in the presence of the trimming inhibitor methyldeoxynojirimycin and (iii) to a single N-acetylglucosamine residue by removal of the oligomannosidic sugar with endo-beta-N-acetylglucosaminidase H.
T7 1146-1312 Sentence denotes Neither the authentic nor the modified oligosaccharides allowed antibody binding, as indicated by enzyme-linked immunosorbent assay (ELISA) and Western blot analyses.
T8 1313-1462 Sentence denotes Reactivity was observed, however, after complete removal of the carbohydrate from HA of the Rostock strain by digestion with peptide-N-glycosidase F.
T9 1463-1547 Sentence denotes HA of the Dutch strain was reactive without prior peptide-N-glycosidase F treatment.
T10 1548-1686 Sentence denotes These results demonstrate that a single N-acetyl-glucosamine at asparagine149 is sufficient to prevent recognition of the peptide epitope.

GlycoBiology-PACDB

Id Subject Object Predicate Lexical cue
_T1 48-63 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC780 denotes influenza virus
_T2 179-196 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC780 denotes influenza viruses

GlycoBiology-FMA

Id Subject Object Predicate Lexical cue
_T1 0-12 FMAID:82737 denotes Carbohydrate
_T2 0-12 FMAID:197276 denotes Carbohydrate
_T3 94-109 FMAID:196731 denotes oligosaccharide
_T4 94-109 FMAID:82742 denotes oligosaccharide
_T5 262-272 FMAID:82740 denotes nucleotide
_T6 262-272 FMAID:196729 denotes nucleotide
_T7 283-293 FMAID:196728 denotes amino acid
_T8 283-293 FMAID:82739 denotes amino acid
_T9 345-361 FMAID:82742 denotes oligosaccharides
_T10 345-361 FMAID:196731 denotes oligosaccharides
_T11 417-430 FMAID:197276 denotes carbohydrates
_T12 417-430 FMAID:82737 denotes carbohydrates
_T13 467-482 FMAID:196731 denotes oligosaccharide
_T14 467-482 FMAID:82742 denotes oligosaccharide
_T15 732-743 FMAID:82739 denotes amino acids
_T16 732-743 FMAID:196728 denotes amino acids
_T17 757-770 FMAID:82737 denotes carbohydrates
_T18 757-770 FMAID:197276 denotes carbohydrates
_T19 869-874 FMAID:68646 denotes cells
_T20 869-874 FMAID:169002 denotes cells
_T21 1036-1055 FMAID:196781 denotes N-acetylglucosamine
_T22 1036-1055 FMAID:82787 denotes N-acetylglucosamine
_T23 1098-1103 FMAID:196724 denotes sugar
_T24 1119-1142 FMAID:196781 denotes N-acetylglucosaminidase
_T25 1119-1142 FMAID:82787 denotes N-acetylglucosaminidase
_T26 1185-1201 FMAID:82742 denotes oligosaccharides
_T27 1185-1201 FMAID:196731 denotes oligosaccharides
_T28 1210-1218 FMAID:167180 denotes antibody
_T29 1377-1389 FMAID:197276 denotes carbohydrate
_T30 1377-1389 FMAID:82737 denotes carbohydrate
_T31 1588-1608 FMAID:82787 denotes N-acetyl-glucosamine
_T32 1588-1608 FMAID:196781 denotes N-acetyl-glucosamine
_T33 1597-1608 FMAID:196792 denotes glucosamine
_T34 1597-1608 FMAID:82797 denotes glucosamine

uniprot-human

Id Subject Object Predicate Lexical cue
T1 151-153 http://www.uniprot.org/uniprot/P69208 denotes HA
T2 377-379 http://www.uniprot.org/uniprot/P69208 denotes HA
T3 778-780 http://www.uniprot.org/uniprot/P69208 denotes HA
T4 1395-1397 http://www.uniprot.org/uniprot/P69208 denotes HA
T5 1463-1465 http://www.uniprot.org/uniprot/P69208 denotes HA
T6 904-906 http://www.uniprot.org/uniprot/Q8SNA0 denotes ii
T7 1114-1142 http://www.uniprot.org/uniprot/Q9HAR0 denotes beta-N-acetylglucosaminidase

uniprot-mouse

Id Subject Object Predicate Lexical cue
T1 904-906 http://www.uniprot.org/uniprot/P04441 denotes ii

GlycoBiology-NCBITAXON

Id Subject Object Predicate Lexical cue
T1 48-63 http://purl.bioontology.org/ontology/NCBITAXON/11320 denotes influenza virus
T2 48-63 http://purl.bioontology.org/ontology/NCBITAXON/11520 denotes influenza virus
T3 58-63 http://purl.bioontology.org/ontology/NCBITAXON/184751 denotes virus
T4 179-196 http://purl.bioontology.org/ontology/NCBITAXON/11320 denotes influenza viruses
T5 283-302 http://purl.bioontology.org/ontology/STY/T087 denotes amino acid sequence
T6 869-874 http://purl.bioontology.org/ontology/STY/T025 denotes cells
T7 883-894 http://purl.bioontology.org/ontology/NCBITAXON/558017 denotes baculovirus
T8 1114-1118 http://purl.bioontology.org/ontology/NCBITAXON/3554 denotes beta
T9 1114-1118 http://purl.bioontology.org/ontology/NCBITAXON/158455 denotes beta

GO-BP

Id Subject Object Predicate Lexical cue
T1 942-948 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T2 1423-1432 http://purl.obolibrary.org/obo/GO_0007586 denotes digestion

GO-MF

Id Subject Object Predicate Lexical cue
T1 1210-1218 http://purl.obolibrary.org/obo/GO_0003823 denotes antibody
T2 1219-1226 http://purl.obolibrary.org/obo/GO_0070026 denotes binding
T3 1219-1226 http://purl.obolibrary.org/obo/GO_0003680 denotes binding
T4 1219-1226 http://purl.obolibrary.org/obo/GO_0017091 denotes binding
T5 1219-1226 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

GO-CC

Id Subject Object Predicate Lexical cue
T1 839-844 http://purl.obolibrary.org/obo/GO_0019013 denotes cores
T2 869-874 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T3 1168-1171 http://purl.obolibrary.org/obo/GO_0005731 denotes nor

EDAM-topics

Id Subject Object Predicate Lexical cue
T1 0-12 http://edamontology.org/topic_0152 denotes Carbohydrate
T2 27-36 http://edamontology.org/topic_2830 denotes antigenic
T3 162-172 http://edamontology.org/topic_0783 denotes pathogenic
T4 189-196 http://edamontology.org/topic_0781 denotes viruses
T5 283-293 http://edamontology.org/topic_0154 denotes amino acid
T6 294-302 http://edamontology.org/topic_3168 denotes sequence
T7 294-302 http://edamontology.org/topic_0080 denotes sequence
T8 417-430 http://edamontology.org/topic_0152 denotes carbohydrates
T9 579-588 http://edamontology.org/topic_2830 denotes antigenic
T10 626-635 http://edamontology.org/topic_2830 denotes antigenic
T11 712-720 http://edamontology.org/topic_0154 denotes peptides
T12 732-743 http://edamontology.org/topic_0154 denotes amino acids
T13 757-770 http://edamontology.org/topic_0152 denotes carbohydrates
T14 1377-1389 http://edamontology.org/topic_0152 denotes carbohydrate
T15 1438-1445 http://edamontology.org/topic_0154 denotes peptide
T16 1513-1520 http://edamontology.org/topic_0154 denotes peptide
T17 1670-1677 http://edamontology.org/topic_0154 denotes peptide

EDAM-DFO

Id Subject Object Predicate Lexical cue
T1 116-126 http://edamontology.org/operation_2424 denotes Comparison
T2 162-172 http://edamontology.org/data_3718 denotes pathogenic
T3 262-272 http://edamontology.org/format_1207 denotes nucleotide
T4 294-302 http://edamontology.org/operation_3218 denotes sequence
T5 294-302 http://edamontology.org/data_2044 denotes sequence
T6 712-720 http://edamontology.org/data_2906 denotes peptides
T7 972-980 http://edamontology.org/operation_3192 denotes trimming
T8 1056-1063 http://edamontology.org/data_1756 denotes residue
T9 1438-1445 http://edamontology.org/data_2906 denotes peptide
T10 1513-1520 http://edamontology.org/data_2906 denotes peptide
T11 1562-1573 http://edamontology.org/operation_2246 denotes demonstrate
T12 1651-1662 http://edamontology.org/operation_2423 denotes recognition
T13 1670-1677 http://edamontology.org/data_2906 denotes peptide

NGLY1-deficiency

Id Subject Object Predicate Lexical cue
PD-NGLY1-deficiency-B_T1 1036-1055 chem:24139 denotes N-acetylglucosamine
PD-NGLY1-deficiency-B_T2 1588-1608 chem:24139 denotes N-acetyl-glucosamine
PD-NGLY1-deficiency-B_T3 1109-1142 hgnc:24622 denotes endo-beta-N-acetylglucosaminidase

GlyTouCan-IUPAC

Id Subject Object Predicate Lexical cue
GlycanIUPAC_T1 1098-1103 "http://rdf.glycoinfo.org/glycan/G59665TO" denotes sugar
GlycanIUPAC_T2 1098-1103 "http://rdf.glycoinfo.org/glycan/G32915EI" denotes sugar
GlycanIUPAC_T3 1098-1103 "http://rdf.glycoinfo.org/glycan/G60625TS" denotes sugar

mondo_disease

Id Subject Object Predicate Lexical cue mondo_id
T1 48-57 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T2 173-188 Disease denotes avian influenza http://purl.obolibrary.org/obo/MONDO_0018695

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 173-178 OrganismTaxon denotes avian 8782
T2 179-198 OrganismTaxon denotes influenza viruses A 197911