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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 2-39 protein denotes lymphoid cell-specific nuclear factor
T2 51-70 protein denotes c-Rel-like proteins
T3 101-137 DNA denotes interleukin-6 kappa B-related motifs
T4 172-186 cell_type denotes lymphoid cells
T5 192-215 protein denotes proto-oncoprotein c-Rel
T6 235-285 protein denotes nuclear factor kappa B transcription factor family
T7 306-309 protein denotes p50
T8 314-326 protein denotes p65 subunits
T9 330-352 protein denotes nuclear factor kappa B
T10 372-377 protein denotes c-Rel
T11 387-400 DNA denotes kappa B sites
T12 404-414 protein denotes homodimers
T13 426-438 protein denotes heterodimers
T14 444-447 protein denotes p50
T15 455-465 protein denotes homodimers
T16 470-482 protein denotes heterodimers
T17 550-564 DNA denotes kappa B motifs
T18 585-600 protein denotes c-Rel homodimer
T19 625-638 protein denotes interleukin-6
T20 640-644 protein denotes IL-6
T21 650-679 DNA denotes beta interferon kappa B sites
T22 714-717 protein denotes p50
T23 748-785 protein denotes lymphoid cell-specific nuclear factor
T24 808-813 protein denotes c-Rel
T25 822-834 protein denotes p50 epitopes
T26 856-886 protein denotes IL-6 kappa B binding factor II
T27 911-926 protein denotes c-Rel homodimer
T28 965-1000 DNA denotes IL-6 kappa B-related kappa B motifs
T29 1049-1067 DNA denotes IL-6 kappa B motif
T30 1090-1135 DNA denotes IL-1/tumor necrosis factor-responsive element
T31 1139-1156 cell_type denotes nonlymphoid cells
T32 1200-1214 cell_type denotes lymphoid cells
T33 1225-1243 cell_line denotes Jurkat T-cell line
T34 1275-1305 protein denotes IL-6 kappa B binding factor II
T35 1344-1379 DNA denotes IL-6 kappa B-related kappa B motifs
T36 1383-1397 cell_type denotes lymphoid cells

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-187 Sentence denotes A lymphoid cell-specific nuclear factor containing c-Rel-like proteins preferentially interacts with interleukin-6 kappa B-related motifs whose activities are repressed in lymphoid cells.
S2 188-353 Sentence denotes The proto-oncoprotein c-Rel is a member of the nuclear factor kappa B transcription factor family, which includes the p50 and p65 subunits of nuclear factor kappa B.
S3 354-448 Sentence denotes We show here that c-Rel binds to kappa B sites as homodimers as well as heterodimers with p50.
S4 449-565 Sentence denotes These homodimers and heterodimers show distinct DNA-binding specificities and affinities for various kappa B motifs.
S5 566-680 Sentence denotes In particular, the c-Rel homodimer has a high affinity for interleukin-6 (IL-6) and beta interferon kappa B sites.
S6 681-1001 Sentence denotes In spite of its association with p50 in vitro, however, we found a lymphoid cell-specific nuclear factor in vivo that contains c-Rel but not p50 epitopes; this factor, termed IL-6 kappa B binding factor II, appears to contain the c-Rel homodimer and preferentially recognizes several IL-6 kappa B-related kappa B motifs.
S7 1002-1244 Sentence denotes Although it has been previously shown that the IL-6 kappa B motif functions as a potent IL-1/tumor necrosis factor-responsive element in nonlymphoid cells, its activity was found to be repressed in lymphoid cells such as a Jurkat T-cell line.
S8 1245-1398 Sentence denotes We also present evidence that IL-6 kappa B binding factor II functions as a repressor specific for IL-6 kappa B-related kappa B motifs in lymphoid cells.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 0-39 NP denotes A lymphoid cell-specific nuclear factor
C3 101-114 NP denotes interleukin-6
C2 101-137 NP denotes interleukin-6 kappa B-related motifs
C4 138-143 NP denotes whose
C5 172-186 NP denotes lymphoid cells
C6 188-215 NP denotes The proto-oncoprotein c-Rel
C8 235-257 NP denotes nuclear factor kappa B
C7 231-285 NP denotes the nuclear factor kappa B transcription factor family
C9 287-292 NP denotes which
C10 306-309 NP denotes p50
C11 330-352 NP denotes nuclear factor kappa B
C13 372-377 NP denotes c-Rel
C14 444-447 NP denotes p50
C12 372-447 NP denotes c-Rel binds to kappa B sites as homodimers as well as heterodimers with p50
C15 449-482 NP denotes These homodimers and heterodimers
C17 581-590 NP denotes the c-Rel
C16 581-600 NP denotes the c-Rel homodimer
C18 625-645 NP denotes interleukin-6 (IL-6)
C19 693-696 NP denotes its
C20 714-717 NP denotes p50
C21 746-785 NP denotes a lymphoid cell-specific nuclear factor
C22 794-798 NP denotes that
C23 808-813 NP denotes c-Rel
C24 836-847 NP denotes this factor
C26 856-860 NP denotes IL-6
C25 856-886 NP denotes IL-6 kappa B binding factor II
C28 907-916 NP denotes the c-Rel
C27 907-926 NP denotes the c-Rel homodimer
C30 965-969 NP denotes IL-6
C29 957-1000 NP denotes several IL-6 kappa B-related kappa B motifs
C32 1049-1053 NP denotes IL-6
C31 1045-1067 NP denotes the IL-6 kappa B motif
C33 1158-1161 NP denotes its
C34 1200-1214 NP denotes lymphoid cells
C36 1275-1279 NP denotes IL-6
C35 1275-1305 NP denotes IL-6 kappa B binding factor II
C38 1344-1348 NP denotes IL-6
C37 1344-1379 NP denotes IL-6 kappa B-related kappa B motifs
C39 1383-1397 NP denotes lymphoid cells
R1 C4 C2 coref-relat whose,interleukin-6 kappa B-related motifs
R2 C9 C7 coref-relat which,the nuclear factor kappa B transcription factor family
R3 C11 C8 coref-ident nuclear factor kappa B,nuclear factor kappa B
R4 C13 C6 coref-ident c-Rel,The proto-oncoprotein c-Rel
R5 C14 C10 coref-ident p50,p50
R6 C15 C12 coref-ident These homodimers and heterodimers,c-Rel binds to kappa B sites as homodimers as well as heterodimers with p50
R7 C17 C13 coref-ident the c-Rel,c-Rel
R8 C18 C3 coref-ident interleukin-6 (IL-6),interleukin-6
R9 C19 C16 coref-pron its,the c-Rel homodimer
R10 C20 C14 coref-ident p50,p50
R11 C21 C1 coref-ident a lymphoid cell-specific nuclear factor,A lymphoid cell-specific nuclear factor
R12 C22 C21 coref-relat that,a lymphoid cell-specific nuclear factor
R13 C23 C17 coref-ident c-Rel,the c-Rel
R14 C24 C25 coref-ident this factor,IL-6 kappa B binding factor II
R15 C26 C18 coref-ident IL-6,interleukin-6 (IL-6)
R16 C28 C23 coref-ident the c-Rel,c-Rel
R17 C27 C16 coref-ident the c-Rel homodimer,the c-Rel homodimer
R18 C30 C26 coref-ident IL-6,IL-6
R19 C29 C2 coref-ident several IL-6 kappa B-related kappa B motifs,interleukin-6 kappa B-related motifs
R20 C32 C30 coref-ident IL-6,IL-6
R21 C31 C29 coref-ident the IL-6 kappa B motif,several IL-6 kappa B-related kappa B motifs
R22 C33 C31 coref-pron its,the IL-6 kappa B motif
R23 C34 C5 coref-ident lymphoid cells,lymphoid cells
R24 C36 C32 coref-ident IL-6,IL-6
R25 C35 C25 coref-ident IL-6 kappa B binding factor II,IL-6 kappa B binding factor II
R26 C38 C36 coref-ident IL-6,IL-6
R27 C37 C31 coref-ident IL-6 kappa B-related kappa B motifs,the IL-6 kappa B motif
R28 C39 C34 coref-ident lymphoid cells,lymphoid cells

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 2-39 protein_molecule denotes lymphoid cell-specific nuclear factor
T2 51-70 protein_family_or_group denotes c-Rel-like proteins
T3 101-137 DNA_domain_or_region denotes interleukin-6 kappa B-related motifs
T4 172-186 cell_type denotes lymphoid cells
T5 192-215 protein_molecule denotes proto-oncoprotein c-Rel
T6 235-285 protein_family_or_group denotes nuclear factor kappa B transcription factor family
T7 306-309 protein_subunit denotes p50
T8 314-326 protein_subunit denotes p65 subunits
T9 330-352 protein_molecule denotes nuclear factor kappa B
T10 372-377 protein_molecule denotes c-Rel
T11 387-400 DNA_domain_or_region denotes kappa B sites
T12 404-414 protein_complex denotes homodimers
T13 426-438 protein_subunit denotes heterodimers
T14 444-447 protein_subunit denotes p50
T15 455-465 protein_complex denotes homodimers
T16 470-482 protein_complex denotes heterodimers
T17 550-564 DNA_domain_or_region denotes kappa B motifs
T18 585-590 protein_molecule denotes c-Rel
T19 625-638 DNA_domain_or_region denotes interleukin-6
T20 640-644 protein_molecule denotes IL-6
T21 650-665 DNA_domain_or_region denotes beta interferon
T22 666-679 DNA_domain_or_region denotes kappa B sites
T23 714-717 protein_subunit denotes p50
T24 748-785 protein_family_or_group denotes lymphoid cell-specific nuclear factor
T25 808-813 protein_molecule denotes c-Rel
T26 822-825 protein_subunit denotes p50
T27 856-860 protein_molecule denotes IL-6
T28 911-916 protein_molecule denotes c-Rel
T29 965-969 protein_molecule denotes IL-6
T30 986-1000 DNA_domain_or_region denotes kappa B motifs
T31 1049-1053 protein_molecule denotes IL-6
T32 1090-1135 DNA_domain_or_region denotes IL-1/tumor necrosis factor-responsive element
T33 1139-1156 cell_type denotes nonlymphoid cells
T34 1200-1214 cell_type denotes lymphoid cells
T35 1225-1243 cell_line denotes Jurkat T-cell line
T36 1275-1305 protein_family_or_group denotes IL-6 kappa B binding factor II
T37 1344-1364 DNA_domain_or_region denotes IL-6 kappa B-related
T38 1365-1379 DNA_domain_or_region denotes kappa B motifs
T39 1383-1397 cell_type denotes lymphoid cells