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PubMed:1351413 JSONTXT

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Glycan-Motif

Id Subject Object Predicate Lexical cue
T1 612-619 https://glytoucan.org/Structures/Glycans/G00051MO denotes Lewis-X

GlyCosmos6-Glycan-Motif-Image

Id Subject Object Predicate Lexical cue image
T1 612-619 Glycan_Motif denotes Lewis-X https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G01187XC|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00051MO

GlyCosmos6-Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T1 612-619 https://glytoucan.org/Structures/Glycans/G00051MO denotes Lewis-X

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-147 Sentence denotes Application of restrained minimization, simulated annealing and molecular dynamics simulations for the conformational analysis of oligosaccharides.
TextSentencer_T2 148-413 Sentence denotes The purpose of the present study was to determine the confidence with which the small number of 1H NMR nuclear Overhauser effect (NOE) distance constraints measurable across glycosidic linkages in oligosaccharides could be used for solution conformational analysis.
TextSentencer_T3 414-642 Sentence denotes This was assessed by use of these constraints in restrained molecular mechanical minimization of the tetrasaccharide Gal beta 1----4(Fuc alpha 1----3)Glc-NAc beta 1----3Gal, a model compound of the Lewis-X antigenic determinant.
TextSentencer_T4 643-777 Sentence denotes This presents a particularly severe test case in view of extreme resonance overlap and a dearth of inter-residue distance constraints.
TextSentencer_T5 778-964 Sentence denotes It is concluded that these constraints, when used in conventional restrained minimization, result in the generation of 'virtual conformations' and local minima about glycosidic linkages.
TextSentencer_T6 965-1330 Sentence denotes However, these restraints are nevertheless found to be useful in the initial stages of a conformational analysis strategy involving restrained minimization combined with dynamical simulated annealing to define more accurately the global minimum energy configuration, together with molecular dynamics simulation to explore conformational mobility about this minimum.
TextSentencer_T7 1331-1552 Sentence denotes Theoretical ROE values calculated over the time course of the MD simulation, using a formalism appropriate for the time scale of the internal motion, are compared with those obtained experimentally in the oligosaccharide.
T1 0-147 Sentence denotes Application of restrained minimization, simulated annealing and molecular dynamics simulations for the conformational analysis of oligosaccharides.
T2 148-413 Sentence denotes The purpose of the present study was to determine the confidence with which the small number of 1H NMR nuclear Overhauser effect (NOE) distance constraints measurable across glycosidic linkages in oligosaccharides could be used for solution conformational analysis.
T3 414-642 Sentence denotes This was assessed by use of these constraints in restrained molecular mechanical minimization of the tetrasaccharide Gal beta 1----4(Fuc alpha 1----3)Glc-NAc beta 1----3Gal, a model compound of the Lewis-X antigenic determinant.
T4 643-777 Sentence denotes This presents a particularly severe test case in view of extreme resonance overlap and a dearth of inter-residue distance constraints.
T5 778-964 Sentence denotes It is concluded that these constraints, when used in conventional restrained minimization, result in the generation of 'virtual conformations' and local minima about glycosidic linkages.
T6 965-1330 Sentence denotes However, these restraints are nevertheless found to be useful in the initial stages of a conformational analysis strategy involving restrained minimization combined with dynamical simulated annealing to define more accurately the global minimum energy configuration, together with molecular dynamics simulation to explore conformational mobility about this minimum.
T7 1331-1552 Sentence denotes Theoretical ROE values calculated over the time course of the MD simulation, using a formalism appropriate for the time scale of the internal motion, are compared with those obtained experimentally in the oligosaccharide.
T1 0-147 Sentence denotes Application of restrained minimization, simulated annealing and molecular dynamics simulations for the conformational analysis of oligosaccharides.
T2 148-413 Sentence denotes The purpose of the present study was to determine the confidence with which the small number of 1H NMR nuclear Overhauser effect (NOE) distance constraints measurable across glycosidic linkages in oligosaccharides could be used for solution conformational analysis.
T3 414-642 Sentence denotes This was assessed by use of these constraints in restrained molecular mechanical minimization of the tetrasaccharide Gal beta 1----4(Fuc alpha 1----3)Glc-NAc beta 1----3Gal, a model compound of the Lewis-X antigenic determinant.
T4 643-777 Sentence denotes This presents a particularly severe test case in view of extreme resonance overlap and a dearth of inter-residue distance constraints.
T5 778-964 Sentence denotes It is concluded that these constraints, when used in conventional restrained minimization, result in the generation of 'virtual conformations' and local minima about glycosidic linkages.
T6 965-1330 Sentence denotes However, these restraints are nevertheless found to be useful in the initial stages of a conformational analysis strategy involving restrained minimization combined with dynamical simulated annealing to define more accurately the global minimum energy configuration, together with molecular dynamics simulation to explore conformational mobility about this minimum.
T7 1331-1552 Sentence denotes Theoretical ROE values calculated over the time course of the MD simulation, using a formalism appropriate for the time scale of the internal motion, are compared with those obtained experimentally in the oligosaccharide.

GlycoBiology-FMA

Id Subject Object Predicate Lexical cue
_T1 130-146 FMAID:196731 denotes oligosaccharides
_T2 130-146 FMAID:82742 denotes oligosaccharides
_T3 345-361 FMAID:82742 denotes oligosaccharides
_T4 345-361 FMAID:196731 denotes oligosaccharides
_T5 596-604 FMAID:67745 denotes compound
_T6 596-604 FMAID:165656 denotes compound
_T7 679-683 FMAID:178661 denotes test
_T8 1393-1395 FMAID:179042 denotes MD
_T9 1464-1472 FMAID:214710 denotes internal
_T10 1536-1551 FMAID:196731 denotes oligosaccharide
_T11 1536-1551 FMAID:82742 denotes oligosaccharide

uniprot-human

Id Subject Object Predicate Lexical cue
T1 535-541 http://www.uniprot.org/uniprot/Q92988 denotes beta 1
T2 572-578 http://www.uniprot.org/uniprot/Q92988 denotes beta 1
T3 618-629 http://www.uniprot.org/uniprot/Q16222 denotes X antigenic

GlycoBiology-NCBITAXON

Id Subject Object Predicate Lexical cue
T1 484-494 http://purl.bioontology.org/ontology/NCBITAXON/127244 denotes mechanical
T2 535-539 http://purl.bioontology.org/ontology/NCBITAXON/158455 denotes beta
T3 535-539 http://purl.bioontology.org/ontology/NCBITAXON/3554 denotes beta
T4 572-576 http://purl.bioontology.org/ontology/NCBITAXON/158455 denotes beta
T5 572-576 http://purl.bioontology.org/ontology/NCBITAXON/3554 denotes beta

GO-BP

Id Subject Object Predicate Lexical cue
T1 925-930 http://purl.obolibrary.org/obo/GO_0051179 denotes local

GO-CC

Id Subject Object Predicate Lexical cue
T1 568-571 http://purl.obolibrary.org/obo/GO_0005854 denotes NAc

UBERON-AE

Id Subject Object Predicate Lexical cue
T1 1451-1456 http://purl.obolibrary.org/obo/UBERON_0002542 denotes scale

EDAM-topics

Id Subject Object Predicate Lexical cue
T1 64-82 http://edamontology.org/topic_0176 denotes molecular dynamics
T2 175-180 http://edamontology.org/topic_3678 denotes study
T3 247-250 http://edamontology.org/topic_0593 denotes NMR
T4 333-341 http://edamontology.org/topic_0102 denotes linkages
T5 620-629 http://edamontology.org/topic_2830 denotes antigenic
T6 955-963 http://edamontology.org/topic_0102 denotes linkages
T7 1246-1264 http://edamontology.org/topic_0176 denotes molecular dynamics

EDAM-DFO

Id Subject Object Predicate Lexical cue
T1 64-94 http://edamontology.org/operation_2476 denotes molecular dynamics simulations
T2 118-126 http://edamontology.org/operation_2945 denotes analysis
T3 304-314 http://edamontology.org/data_3108 denotes measurable
T4 404-412 http://edamontology.org/operation_2945 denotes analysis
T5 748-755 http://edamontology.org/data_1756 denotes residue
T6 883-893 http://edamontology.org/operation_3429 denotes generation
T7 1069-1077 http://edamontology.org/operation_2945 denotes analysis
T8 1246-1275 http://edamontology.org/operation_2476 denotes molecular dynamics simulation
T9 1354-1364 http://edamontology.org/operation_3438 denotes calculated

GlycoBiology-Motifs

Id Subject Object Predicate Lexical cue
T1 612-617 http://rdf.glycoinfo.org/glycan/G00047MO denotes Lewis
T2 612-619 http://rdf.glycoinfo.org/glycan/G00051MO denotes Lewis-X

GlycoBiology-Epitope

Id Subject Object Predicate Lexical cue
PD-GlycoEpitope-B_T1 612-619 http://www.glycoepitope.jp/epitopes/EP0011 denotes Lewis-X

GlyTouCan-IUPAC

Id Subject Object Predicate Lexical cue
GlycanIUPAC_T1 531-534 "http://rdf.glycoinfo.org/glycan/G93924TT" denotes Gal
GlycanIUPAC_T2 531-534 "http://rdf.glycoinfo.org/glycan/G25565DN" denotes Gal
GlycanIUPAC_T3 531-534 "http://rdf.glycoinfo.org/glycan/G97215EV" denotes Gal
GlycanIUPAC_T4 531-534 "http://rdf.glycoinfo.org/glycan/G79664KO" denotes Gal
GlycanIUPAC_T5 531-534 "http://rdf.glycoinfo.org/glycan/G24107FU" denotes Gal
GlycanIUPAC_T6 531-534 "http://rdf.glycoinfo.org/glycan/G09864UE" denotes Gal
GlycanIUPAC_T7 531-534 "http://rdf.glycoinfo.org/glycan/G28032MC" denotes Gal
GlycanIUPAC_T8 531-534 "http://rdf.glycoinfo.org/glycan/G28005UP" denotes Gal
GlycanIUPAC_T9 531-534 "http://rdf.glycoinfo.org/glycan/G92708AT" denotes Gal
GlycanIUPAC_T10 531-534 "http://rdf.glycoinfo.org/glycan/G73757UC" denotes Gal
GlycanIUPAC_T11 531-534 "http://rdf.glycoinfo.org/glycan/G51062DM" denotes Gal
GlycanIUPAC_T12 531-534 "http://rdf.glycoinfo.org/glycan/G05866BJ" denotes Gal
GlycanIUPAC_T13 531-534 "http://rdf.glycoinfo.org/glycan/G87394FZ" denotes Gal
GlycanIUPAC_T14 531-534 "http://rdf.glycoinfo.org/glycan/G03871NF" denotes Gal
GlycanIUPAC_T15 531-534 "http://rdf.glycoinfo.org/glycan/G29377VE" denotes Gal
GlycanIUPAC_T16 531-534 "http://rdf.glycoinfo.org/glycan/G33457CX" denotes Gal
GlycanIUPAC_T17 531-534 "http://rdf.glycoinfo.org/glycan/G97368GU" denotes Gal
GlycanIUPAC_T18 531-534 "http://rdf.glycoinfo.org/glycan/G18512EL" denotes Gal
GlycanIUPAC_T19 531-534 "http://rdf.glycoinfo.org/glycan/G41137VS" denotes Gal
GlycanIUPAC_T20 531-534 "http://rdf.glycoinfo.org/glycan/G30521NA" denotes Gal
GlycanIUPAC_T21 531-534 "http://rdf.glycoinfo.org/glycan/G19388CD" denotes Gal
GlycanIUPAC_T22 531-534 "http://rdf.glycoinfo.org/glycan/G53151FU" denotes Gal
GlycanIUPAC_T23 531-534 "http://rdf.glycoinfo.org/glycan/G27105XC" denotes Gal
GlycanIUPAC_T24 531-534 "http://rdf.glycoinfo.org/glycan/G91210VM" denotes Gal
GlycanIUPAC_T25 531-534 "http://rdf.glycoinfo.org/glycan/G40841DE" denotes Gal
GlycanIUPAC_T26 531-534 "http://rdf.glycoinfo.org/glycan/G71241HP" denotes Gal
GlycanIUPAC_T27 531-534 "http://rdf.glycoinfo.org/glycan/G84636BJ" denotes Gal
GlycanIUPAC_T28 531-534 "http://rdf.glycoinfo.org/glycan/G47905LJ" denotes Gal
GlycanIUPAC_T29 531-534 "http://rdf.glycoinfo.org/glycan/G39340DV" denotes Gal
GlycanIUPAC_T30 531-534 "http://rdf.glycoinfo.org/glycan/G48801AQ" denotes Gal
GlycanIUPAC_T31 531-534 "http://rdf.glycoinfo.org/glycan/G14573NX" denotes Gal
GlycanIUPAC_T32 531-534 "http://rdf.glycoinfo.org/glycan/G56762TR" denotes Gal
GlycanIUPAC_T33 531-534 "http://rdf.glycoinfo.org/glycan/G20013XO" denotes Gal
GlycanIUPAC_T34 531-534 "http://rdf.glycoinfo.org/glycan/G39504DR" denotes Gal
GlycanIUPAC_T35 531-534 "http://rdf.glycoinfo.org/glycan/G35218RQ" denotes Gal
GlycanIUPAC_T36 531-534 "http://rdf.glycoinfo.org/glycan/G53048SH" denotes Gal
GlycanIUPAC_T37 531-534 "http://rdf.glycoinfo.org/glycan/G78418IX" denotes Gal
GlycanIUPAC_T38 531-534 "http://rdf.glycoinfo.org/glycan/G09780OD" denotes Gal
GlycanIUPAC_T39 531-534 "http://rdf.glycoinfo.org/glycan/G56359GL" denotes Gal
GlycanIUPAC_T40 531-534 "http://rdf.glycoinfo.org/glycan/G78941YC" denotes Gal
GlycanIUPAC_T41 531-534 "http://rdf.glycoinfo.org/glycan/G26829FC" denotes Gal
GlycanIUPAC_T42 531-534 "http://rdf.glycoinfo.org/glycan/G88538ZC" denotes Gal
GlycanIUPAC_T43 531-534 "http://rdf.glycoinfo.org/glycan/G46593ZR" denotes Gal
GlycanIUPAC_T44 531-534 "http://rdf.glycoinfo.org/glycan/G43523TH" denotes Gal
GlycanIUPAC_T45 531-534 "http://rdf.glycoinfo.org/glycan/G36445ON" denotes Gal
GlycanIUPAC_T46 531-534 "http://rdf.glycoinfo.org/glycan/G67363FK" denotes Gal
GlycanIUPAC_T47 531-534 "http://rdf.glycoinfo.org/glycan/G17562KT" denotes Gal
GlycanIUPAC_T48 531-534 "http://rdf.glycoinfo.org/glycan/G24774YJ" denotes Gal
GlycanIUPAC_T49 531-534 "http://rdf.glycoinfo.org/glycan/G32162UO" denotes Gal
GlycanIUPAC_T50 531-534 "http://rdf.glycoinfo.org/glycan/G89163RR" denotes Gal
GlycanIUPAC_T51 531-534 "http://rdf.glycoinfo.org/glycan/G99522DY" denotes Gal
GlycanIUPAC_T52 531-534 "http://rdf.glycoinfo.org/glycan/G59246IF" denotes Gal
GlycanIUPAC_T53 531-534 "http://rdf.glycoinfo.org/glycan/G95321NT" denotes Gal
GlycanIUPAC_T54 531-534 "http://rdf.glycoinfo.org/glycan/G17531ZI" denotes Gal
GlycanIUPAC_T55 531-534 "http://rdf.glycoinfo.org/glycan/G54322SU" denotes Gal
GlycanIUPAC_T56 531-534 "http://rdf.glycoinfo.org/glycan/G72010DO" denotes Gal
GlycanIUPAC_T57 531-534 "http://rdf.glycoinfo.org/glycan/G44269EP" denotes Gal
GlycanIUPAC_T58 531-534 "http://rdf.glycoinfo.org/glycan/G57335AD" denotes Gal
GlycanIUPAC_T59 531-534 "http://rdf.glycoinfo.org/glycan/G60837LL" denotes Gal
GlycanIUPAC_T60 531-534 "http://rdf.glycoinfo.org/glycan/G61929XX" denotes Gal
GlycanIUPAC_T61 531-534 "http://rdf.glycoinfo.org/glycan/G88747RA" denotes Gal
GlycanIUPAC_T62 531-534 "http://rdf.glycoinfo.org/glycan/G47955HA" denotes Gal
GlycanIUPAC_T63 531-534 "http://rdf.glycoinfo.org/glycan/G60982WS" denotes Gal
GlycanIUPAC_T64 531-534 "http://rdf.glycoinfo.org/glycan/G37035KG" denotes Gal
GlycanIUPAC_T65 531-534 "http://rdf.glycoinfo.org/glycan/G46297FI" denotes Gal
GlycanIUPAC_T66 531-534 "http://rdf.glycoinfo.org/glycan/G35475KI" denotes Gal
GlycanIUPAC_T67 531-534 "http://rdf.glycoinfo.org/glycan/G29771JN" denotes Gal
GlycanIUPAC_T68 531-534 "http://rdf.glycoinfo.org/glycan/G61285YR" denotes Gal
GlycanIUPAC_T69 531-534 "http://rdf.glycoinfo.org/glycan/G54785MW" denotes Gal
GlycanIUPAC_T70 531-534 "http://rdf.glycoinfo.org/glycan/G53039GT" denotes Gal
GlycanIUPAC_T71 531-534 "http://rdf.glycoinfo.org/glycan/G00601HK" denotes Gal
GlycanIUPAC_T72 531-534 "http://rdf.glycoinfo.org/glycan/G10485IJ" denotes Gal
GlycanIUPAC_T73 531-534 "http://rdf.glycoinfo.org/glycan/G16393IB" denotes Gal
GlycanIUPAC_T74 531-534 "http://rdf.glycoinfo.org/glycan/G98436FZ" denotes Gal
GlycanIUPAC_T75 531-534 "http://rdf.glycoinfo.org/glycan/G18825IA" denotes Gal
GlycanIUPAC_T76 531-534 "http://rdf.glycoinfo.org/glycan/G61281HQ" denotes Gal
GlycanIUPAC_T77 531-534 "http://rdf.glycoinfo.org/glycan/G07798TI" denotes Gal
GlycanIUPAC_T78 531-534 "http://rdf.glycoinfo.org/glycan/G55921QA" denotes Gal
GlycanIUPAC_T79 531-534 "http://rdf.glycoinfo.org/glycan/G99066DL" denotes Gal
GlycanIUPAC_T80 531-534 "http://rdf.glycoinfo.org/glycan/G33451PQ" denotes Gal
GlycanIUPAC_T81 531-534 "http://rdf.glycoinfo.org/glycan/G02111XU" denotes Gal
GlycanIUPAC_T82 531-534 "http://rdf.glycoinfo.org/glycan/G85193OM" denotes Gal
GlycanIUPAC_T83 531-534 "http://rdf.glycoinfo.org/glycan/G89174YQ" denotes Gal
GlycanIUPAC_T84 531-534 "http://rdf.glycoinfo.org/glycan/G28802LE" denotes Gal
GlycanIUPAC_T85 531-534 "http://rdf.glycoinfo.org/glycan/G56061JK" denotes Gal
GlycanIUPAC_T86 531-534 "http://rdf.glycoinfo.org/glycan/G68941BC" denotes Gal
GlycanIUPAC_T87 531-534 "http://rdf.glycoinfo.org/glycan/G55436FC" denotes Gal
GlycanIUPAC_T88 531-534 "http://rdf.glycoinfo.org/glycan/G24002PU" denotes Gal
GlycanIUPAC_T89 531-534 "http://rdf.glycoinfo.org/glycan/G61387SV" denotes Gal
GlycanIUPAC_T90 531-534 "http://rdf.glycoinfo.org/glycan/G31834HW" denotes Gal
GlycanIUPAC_T91 531-534 "http://rdf.glycoinfo.org/glycan/G35324RT" denotes Gal
GlycanIUPAC_T92 531-534 "http://rdf.glycoinfo.org/glycan/G34803QO" denotes Gal
GlycanIUPAC_T93 531-534 "http://rdf.glycoinfo.org/glycan/G92898FF" denotes Gal
GlycanIUPAC_T94 531-534 "http://rdf.glycoinfo.org/glycan/G01318VX" denotes Gal
GlycanIUPAC_T95 531-534 "http://rdf.glycoinfo.org/glycan/G83200MX" denotes Gal
GlycanIUPAC_T96 531-534 "http://rdf.glycoinfo.org/glycan/G56286UC" denotes Gal
GlycanIUPAC_T97 531-534 "http://rdf.glycoinfo.org/glycan/G07304QA" denotes Gal
GlycanIUPAC_T98 531-534 "http://rdf.glycoinfo.org/glycan/G06868OU" denotes Gal
GlycanIUPAC_T99 531-534 "http://rdf.glycoinfo.org/glycan/G12647BS" denotes Gal
GlycanIUPAC_T100 531-534 "http://rdf.glycoinfo.org/glycan/G51841DF" denotes Gal
GlycanIUPAC_T101 531-534 "http://rdf.glycoinfo.org/glycan/G32122AJ" denotes Gal
GlycanIUPAC_T102 531-534 "http://rdf.glycoinfo.org/glycan/G41125MN" denotes Gal
GlycanIUPAC_T103 531-534 "http://rdf.glycoinfo.org/glycan/G16093XS" denotes Gal
GlycanIUPAC_T104 531-534 "http://rdf.glycoinfo.org/glycan/G62425IX" denotes Gal
GlycanIUPAC_T105 531-534 "http://rdf.glycoinfo.org/glycan/G15673TO" denotes Gal
GlycanIUPAC_T106 531-534 "http://rdf.glycoinfo.org/glycan/G32857IK" denotes Gal
GlycanIUPAC_T107 531-534 "http://rdf.glycoinfo.org/glycan/G60047CJ" denotes Gal
GlycanIUPAC_T108 531-534 "http://rdf.glycoinfo.org/glycan/G55718ZB" denotes Gal
GlycanIUPAC_T109 531-534 "http://rdf.glycoinfo.org/glycan/G88355ZE" denotes Gal
GlycanIUPAC_T110 531-534 "http://rdf.glycoinfo.org/glycan/G11283PA" denotes Gal
GlycanIUPAC_T111 531-534 "http://rdf.glycoinfo.org/glycan/G71737IZ" denotes Gal
GlycanIUPAC_T112 531-534 "http://rdf.glycoinfo.org/glycan/G60912WZ" denotes Gal
GlycanIUPAC_T113 531-534 "http://rdf.glycoinfo.org/glycan/G99655SO" denotes Gal
GlycanIUPAC_T114 531-534 "http://rdf.glycoinfo.org/glycan/G10300TW" denotes Gal
GlycanIUPAC_T115 531-534 "http://rdf.glycoinfo.org/glycan/G89509FL" denotes Gal
GlycanIUPAC_T116 531-534 "http://rdf.glycoinfo.org/glycan/G31465TH" denotes Gal
GlycanIUPAC_T117 531-534 "http://rdf.glycoinfo.org/glycan/G94101LU" denotes Gal
GlycanIUPAC_T118 531-534 "http://rdf.glycoinfo.org/glycan/G38610BB" denotes Gal
GlycanIUPAC_T119 531-534 "http://rdf.glycoinfo.org/glycan/G85893UF" denotes Gal
GlycanIUPAC_T120 547-550 "http://rdf.glycoinfo.org/glycan/G49112ZN" denotes Fuc
GlycanIUPAC_T121 547-550 "http://rdf.glycoinfo.org/glycan/G50059AJ" denotes Fuc
GlycanIUPAC_T122 547-550 "http://rdf.glycoinfo.org/glycan/G76218YK" denotes Fuc
GlycanIUPAC_T123 547-550 "http://rdf.glycoinfo.org/glycan/G50102KR" denotes Fuc
GlycanIUPAC_T124 547-550 "http://rdf.glycoinfo.org/glycan/G10717VS" denotes Fuc
GlycanIUPAC_T125 547-550 "http://rdf.glycoinfo.org/glycan/G60524RK" denotes Fuc
GlycanIUPAC_T126 547-550 "http://rdf.glycoinfo.org/glycan/G84407TT" denotes Fuc
GlycanIUPAC_T127 547-550 "http://rdf.glycoinfo.org/glycan/G64717JT" denotes Fuc
GlycanIUPAC_T128 547-550 "http://rdf.glycoinfo.org/glycan/G45003TT" denotes Fuc
GlycanIUPAC_T129 547-550 "http://rdf.glycoinfo.org/glycan/G73923FP" denotes Fuc
GlycanIUPAC_T130 547-550 "http://rdf.glycoinfo.org/glycan/G78231MB" denotes Fuc
GlycanIUPAC_T131 547-550 "http://rdf.glycoinfo.org/glycan/G80487UG" denotes Fuc
GlycanIUPAC_T132 547-550 "http://rdf.glycoinfo.org/glycan/G29758MI" denotes Fuc
GlycanIUPAC_T133 547-550 "http://rdf.glycoinfo.org/glycan/G02671KD" denotes Fuc
GlycanIUPAC_T134 547-550 "http://rdf.glycoinfo.org/glycan/G57926TZ" denotes Fuc
GlycanIUPAC_T135 547-550 "http://rdf.glycoinfo.org/glycan/G41718FD" denotes Fuc
GlycanIUPAC_T136 547-550 "http://rdf.glycoinfo.org/glycan/G99840FL" denotes Fuc
GlycanIUPAC_T137 547-550 "http://rdf.glycoinfo.org/glycan/G64321UX" denotes Fuc
GlycanIUPAC_T138 547-550 "http://rdf.glycoinfo.org/glycan/G11231EG" denotes Fuc
GlycanIUPAC_T139 547-550 "http://rdf.glycoinfo.org/glycan/G62741TN" denotes Fuc
GlycanIUPAC_T140 547-550 "http://rdf.glycoinfo.org/glycan/G51576ZQ" denotes Fuc
GlycanIUPAC_T141 547-550 "http://rdf.glycoinfo.org/glycan/G66056LD" denotes Fuc
GlycanIUPAC_T142 547-550 "http://rdf.glycoinfo.org/glycan/G02768BF" denotes Fuc
GlycanIUPAC_T143 547-550 "http://rdf.glycoinfo.org/glycan/G26168RO" denotes Fuc
GlycanIUPAC_T144 547-550 "http://rdf.glycoinfo.org/glycan/G42890HL" denotes Fuc
GlycanIUPAC_T145 547-550 "http://rdf.glycoinfo.org/glycan/G17533VU" denotes Fuc
GlycanIUPAC_T146 547-550 "http://rdf.glycoinfo.org/glycan/G34306RG" denotes Fuc
GlycanIUPAC_T147 547-550 "http://rdf.glycoinfo.org/glycan/G88735KU" denotes Fuc
GlycanIUPAC_T148 547-550 "http://rdf.glycoinfo.org/glycan/G82605UA" denotes Fuc
GlycanIUPAC_T149 564-567 "http://rdf.glycoinfo.org/glycan/G59743JO" denotes Glc
GlycanIUPAC_T150 564-567 "http://rdf.glycoinfo.org/glycan/G22515CP" denotes Glc
GlycanIUPAC_T151 564-567 "http://rdf.glycoinfo.org/glycan/G50260YT" denotes Glc
GlycanIUPAC_T152 564-567 "http://rdf.glycoinfo.org/glycan/G59271KV" denotes Glc
GlycanIUPAC_T153 564-567 "http://rdf.glycoinfo.org/glycan/G41080ZB" denotes Glc
GlycanIUPAC_T154 564-567 "http://rdf.glycoinfo.org/glycan/G28051VF" denotes Glc
GlycanIUPAC_T155 564-567 "http://rdf.glycoinfo.org/glycan/G44775RL" denotes Glc
GlycanIUPAC_T156 564-567 "http://rdf.glycoinfo.org/glycan/G05723ZI" denotes Glc
GlycanIUPAC_T157 564-567 "http://rdf.glycoinfo.org/glycan/G80753ZP" denotes Glc
GlycanIUPAC_T158 564-567 "http://rdf.glycoinfo.org/glycan/G09675LS" denotes Glc
GlycanIUPAC_T159 564-567 "http://rdf.glycoinfo.org/glycan/G32374SR" denotes Glc
GlycanIUPAC_T160 564-567 "http://rdf.glycoinfo.org/glycan/G35562XQ" denotes Glc
GlycanIUPAC_T161 564-567 "http://rdf.glycoinfo.org/glycan/G79798HI" denotes Glc
GlycanIUPAC_T162 564-567 "http://rdf.glycoinfo.org/glycan/G60629WC" denotes Glc
GlycanIUPAC_T163 564-567 "http://rdf.glycoinfo.org/glycan/G28900GG" denotes Glc
GlycanIUPAC_T164 564-567 "http://rdf.glycoinfo.org/glycan/G80295GO" denotes Glc
GlycanIUPAC_T165 564-567 "http://rdf.glycoinfo.org/glycan/G78827BW" denotes Glc
GlycanIUPAC_T166 564-567 "http://rdf.glycoinfo.org/glycan/G04154TF" denotes Glc
GlycanIUPAC_T167 564-567 "http://rdf.glycoinfo.org/glycan/G52272JK" denotes Glc
GlycanIUPAC_T168 564-567 "http://rdf.glycoinfo.org/glycan/G04451ID" denotes Glc
GlycanIUPAC_T169 564-567 "http://rdf.glycoinfo.org/glycan/G93765AC" denotes Glc
GlycanIUPAC_T170 564-567 "http://rdf.glycoinfo.org/glycan/G37845XB" denotes Glc
GlycanIUPAC_T171 564-567 "http://rdf.glycoinfo.org/glycan/G91536UT" denotes Glc
GlycanIUPAC_T172 564-567 "http://rdf.glycoinfo.org/glycan/G39846RD" denotes Glc
GlycanIUPAC_T173 564-567 "http://rdf.glycoinfo.org/glycan/G16598ZE" denotes Glc
GlycanIUPAC_T174 564-567 "http://rdf.glycoinfo.org/glycan/G69175UD" denotes Glc
GlycanIUPAC_T175 564-567 "http://rdf.glycoinfo.org/glycan/G64029GC" denotes Glc
GlycanIUPAC_T176 564-567 "http://rdf.glycoinfo.org/glycan/G88005IG" denotes Glc
GlycanIUPAC_T177 564-567 "http://rdf.glycoinfo.org/glycan/G20950LN" denotes Glc
GlycanIUPAC_T178 564-567 "http://rdf.glycoinfo.org/glycan/G62915MH" denotes Glc
GlycanIUPAC_T179 564-567 "http://rdf.glycoinfo.org/glycan/G03187PO" denotes Glc
GlycanIUPAC_T180 564-567 "http://rdf.glycoinfo.org/glycan/G35637EX" denotes Glc
GlycanIUPAC_T181 564-567 "http://rdf.glycoinfo.org/glycan/G58694JL" denotes Glc
GlycanIUPAC_T182 564-567 "http://rdf.glycoinfo.org/glycan/G16024FW" denotes Glc
GlycanIUPAC_T183 564-567 "http://rdf.glycoinfo.org/glycan/G32353KL" denotes Glc
GlycanIUPAC_T184 564-567 "http://rdf.glycoinfo.org/glycan/G10359XP" denotes Glc
GlycanIUPAC_T185 564-567 "http://rdf.glycoinfo.org/glycan/G79996IH" denotes Glc
GlycanIUPAC_T186 564-567 "http://rdf.glycoinfo.org/glycan/G74945HO" denotes Glc
GlycanIUPAC_T187 564-567 "http://rdf.glycoinfo.org/glycan/G41472DW" denotes Glc
GlycanIUPAC_T188 564-567 "http://rdf.glycoinfo.org/glycan/G00508LN" denotes Glc
GlycanIUPAC_T189 564-567 "http://rdf.glycoinfo.org/glycan/G57307OS" denotes Glc
GlycanIUPAC_T190 564-567 "http://rdf.glycoinfo.org/glycan/G21068RB" denotes Glc
GlycanIUPAC_T191 564-567 "http://rdf.glycoinfo.org/glycan/G93716IA" denotes Glc
GlycanIUPAC_T192 564-567 "http://rdf.glycoinfo.org/glycan/G79555YY" denotes Glc
GlycanIUPAC_T193 564-567 "http://rdf.glycoinfo.org/glycan/G68618KX" denotes Glc
GlycanIUPAC_T194 564-567 "http://rdf.glycoinfo.org/glycan/G11806XO" denotes Glc
GlycanIUPAC_T195 564-567 "http://rdf.glycoinfo.org/glycan/G23375NF" denotes Glc
GlycanIUPAC_T196 564-567 "http://rdf.glycoinfo.org/glycan/G83211PN" denotes Glc
GlycanIUPAC_T197 564-567 "http://rdf.glycoinfo.org/glycan/G46248XJ" denotes Glc
GlycanIUPAC_T198 564-567 "http://rdf.glycoinfo.org/glycan/G50990UV" denotes Glc
GlycanIUPAC_T199 564-567 "http://rdf.glycoinfo.org/glycan/G11748CA" denotes Glc
GlycanIUPAC_T200 564-567 "http://rdf.glycoinfo.org/glycan/G47705VB" denotes Glc
GlycanIUPAC_T201 564-567 "http://rdf.glycoinfo.org/glycan/G56513MF" denotes Glc
GlycanIUPAC_T202 564-567 "http://rdf.glycoinfo.org/glycan/G29595MF" denotes Glc
GlycanIUPAC_T203 564-567 "http://rdf.glycoinfo.org/glycan/G79937GD" denotes Glc
GlycanIUPAC_T204 564-567 "http://rdf.glycoinfo.org/glycan/G83526PI" denotes Glc
GlycanIUPAC_T205 564-567 "http://rdf.glycoinfo.org/glycan/G72397QO" denotes Glc
GlycanIUPAC_T206 564-567 "http://rdf.glycoinfo.org/glycan/G19751JJ" denotes Glc
GlycanIUPAC_T207 564-567 "http://rdf.glycoinfo.org/glycan/G30236YV" denotes Glc
GlycanIUPAC_T208 564-567 "http://rdf.glycoinfo.org/glycan/G52603CJ" denotes Glc
GlycanIUPAC_T209 564-567 "http://rdf.glycoinfo.org/glycan/G69831UL" denotes Glc
GlycanIUPAC_T210 564-567 "http://rdf.glycoinfo.org/glycan/G70447JX" denotes Glc
GlycanIUPAC_T211 564-567 "http://rdf.glycoinfo.org/glycan/G19550WL" denotes Glc
GlycanIUPAC_T212 564-567 "http://rdf.glycoinfo.org/glycan/G76492IF" denotes Glc
GlycanIUPAC_T213 564-567 "http://rdf.glycoinfo.org/glycan/G30921DY" denotes Glc
GlycanIUPAC_T214 564-567 "http://rdf.glycoinfo.org/glycan/G93844OF" denotes Glc
GlycanIUPAC_T215 564-567 "http://rdf.glycoinfo.org/glycan/G60958XB" denotes Glc
GlycanIUPAC_T216 564-567 "http://rdf.glycoinfo.org/glycan/G89925BN" denotes Glc
GlycanIUPAC_T217 564-567 "http://rdf.glycoinfo.org/glycan/G04660BL" denotes Glc
GlycanIUPAC_T218 564-567 "http://rdf.glycoinfo.org/glycan/G57508FI" denotes Glc
GlycanIUPAC_T219 564-567 "http://rdf.glycoinfo.org/glycan/G89416JB" denotes Glc
GlycanIUPAC_T220 564-567 "http://rdf.glycoinfo.org/glycan/G04443UP" denotes Glc
GlycanIUPAC_T221 564-567 "http://rdf.glycoinfo.org/glycan/G18920XE" denotes Glc
GlycanIUPAC_T222 564-567 "http://rdf.glycoinfo.org/glycan/G16975IY" denotes Glc
GlycanIUPAC_T223 564-567 "http://rdf.glycoinfo.org/glycan/G91289IV" denotes Glc
GlycanIUPAC_T224 564-567 "http://rdf.glycoinfo.org/glycan/G80908PK" denotes Glc
GlycanIUPAC_T225 564-567 "http://rdf.glycoinfo.org/glycan/G58337HT" denotes Glc
GlycanIUPAC_T226 564-567 "http://rdf.glycoinfo.org/glycan/G50847CR" denotes Glc
GlycanIUPAC_T227 564-567 "http://rdf.glycoinfo.org/glycan/G58393QV" denotes Glc
GlycanIUPAC_T228 564-567 "http://rdf.glycoinfo.org/glycan/G71104BM" denotes Glc
GlycanIUPAC_T229 564-567 "http://rdf.glycoinfo.org/glycan/G34414DD" denotes Glc
GlycanIUPAC_T230 564-567 "http://rdf.glycoinfo.org/glycan/G23241IB" denotes Glc
GlycanIUPAC_T231 564-567 "http://rdf.glycoinfo.org/glycan/G86119OK" denotes Glc
GlycanIUPAC_T232 564-567 "http://rdf.glycoinfo.org/glycan/G90738SP" denotes Glc
GlycanIUPAC_T233 564-567 "http://rdf.glycoinfo.org/glycan/G79621UL" denotes Glc
GlycanIUPAC_T234 564-567 "http://rdf.glycoinfo.org/glycan/G25287AB" denotes Glc
GlycanIUPAC_T235 564-567 "http://rdf.glycoinfo.org/glycan/G96108DQ" denotes Glc
GlycanIUPAC_T236 564-567 "http://rdf.glycoinfo.org/glycan/G12678RQ" denotes Glc
GlycanIUPAC_T237 564-567 "http://rdf.glycoinfo.org/glycan/G81016FY" denotes Glc
GlycanIUPAC_T238 564-567 "http://rdf.glycoinfo.org/glycan/G60896QE" denotes Glc
GlycanIUPAC_T239 564-567 "http://rdf.glycoinfo.org/glycan/G28328IY" denotes Glc
GlycanIUPAC_T240 564-567 "http://rdf.glycoinfo.org/glycan/G98259SQ" denotes Glc
GlycanIUPAC_T241 564-567 "http://rdf.glycoinfo.org/glycan/G97961JO" denotes Glc
GlycanIUPAC_T242 564-567 "http://rdf.glycoinfo.org/glycan/G06186NU" denotes Glc
GlycanIUPAC_T243 564-567 "http://rdf.glycoinfo.org/glycan/G91012QA" denotes Glc
GlycanIUPAC_T244 564-567 "http://rdf.glycoinfo.org/glycan/G18124QU" denotes Glc
GlycanIUPAC_T245 564-567 "http://rdf.glycoinfo.org/glycan/G77966MT" denotes Glc
GlycanIUPAC_T246 564-567 "http://rdf.glycoinfo.org/glycan/G69065ZM" denotes Glc
GlycanIUPAC_T247 564-567 "http://rdf.glycoinfo.org/glycan/G56543CB" denotes Glc
GlycanIUPAC_T248 564-567 "http://rdf.glycoinfo.org/glycan/G48702OS" denotes Glc
GlycanIUPAC_T249 564-567 "http://rdf.glycoinfo.org/glycan/G49548NQ" denotes Glc
GlycanIUPAC_T250 564-567 "http://rdf.glycoinfo.org/glycan/G42469OA" denotes Glc
GlycanIUPAC_T251 564-567 "http://rdf.glycoinfo.org/glycan/G62090LW" denotes Glc
GlycanIUPAC_T252 564-567 "http://rdf.glycoinfo.org/glycan/G94606VT" denotes Glc
GlycanIUPAC_T253 564-567 "http://rdf.glycoinfo.org/glycan/G96937AI" denotes Glc
GlycanIUPAC_T254 564-567 "http://rdf.glycoinfo.org/glycan/G51498DQ" denotes Glc
GlycanIUPAC_T255 564-567 "http://rdf.glycoinfo.org/glycan/G94744IV" denotes Glc
GlycanIUPAC_T256 564-567 "http://rdf.glycoinfo.org/glycan/G82967ZA" denotes Glc
GlycanIUPAC_T257 564-571 "http://rdf.glycoinfo.org/glycan/G26693XF" denotes Glc-NAc
GlycanIUPAC_T258 564-571 "http://rdf.glycoinfo.org/glycan/G01864SU" denotes Glc-NAc
GlycanIUPAC_T259 564-571 "http://rdf.glycoinfo.org/glycan/G17605FD" denotes Glc-NAc
GlycanIUPAC_T260 564-571 "http://rdf.glycoinfo.org/glycan/G41950LU" denotes Glc-NAc
GlycanIUPAC_T261 564-571 "http://rdf.glycoinfo.org/glycan/G57195RJ" denotes Glc-NAc
GlycanIUPAC_T262 564-571 "http://rdf.glycoinfo.org/glycan/G85391SA" denotes Glc-NAc
GlycanIUPAC_T263 564-571 "http://rdf.glycoinfo.org/glycan/G89565QL" denotes Glc-NAc
GlycanIUPAC_T264 564-571 "http://rdf.glycoinfo.org/glycan/G80869MR" denotes Glc-NAc
GlycanIUPAC_T265 564-571 "http://rdf.glycoinfo.org/glycan/G55978NL" denotes Glc-NAc
GlycanIUPAC_T266 564-571 "http://rdf.glycoinfo.org/glycan/G54644LT" denotes Glc-NAc
GlycanIUPAC_T267 564-571 "http://rdf.glycoinfo.org/glycan/G25694UG" denotes Glc-NAc
GlycanIUPAC_T268 564-571 "http://rdf.glycoinfo.org/glycan/G25126RB" denotes Glc-NAc
GlycanIUPAC_T269 564-571 "http://rdf.glycoinfo.org/glycan/G51848AD" denotes Glc-NAc
GlycanIUPAC_T270 564-571 "http://rdf.glycoinfo.org/glycan/G94667GM" denotes Glc-NAc
GlycanIUPAC_T271 564-571 "http://rdf.glycoinfo.org/glycan/G30124BO" denotes Glc-NAc
GlycanIUPAC_T272 564-571 "http://rdf.glycoinfo.org/glycan/G82777EZ" denotes Glc-NAc
GlycanIUPAC_T273 564-571 "http://rdf.glycoinfo.org/glycan/G10151YZ" denotes Glc-NAc
GlycanIUPAC_T274 564-571 "http://rdf.glycoinfo.org/glycan/G17585ZM" denotes Glc-NAc
GlycanIUPAC_T275 564-571 "http://rdf.glycoinfo.org/glycan/G04411CJ" denotes Glc-NAc
GlycanIUPAC_T276 564-571 "http://rdf.glycoinfo.org/glycan/G38254HJ" denotes Glc-NAc
GlycanIUPAC_T277 564-571 "http://rdf.glycoinfo.org/glycan/G75188FS" denotes Glc-NAc
GlycanIUPAC_T278 564-571 "http://rdf.glycoinfo.org/glycan/G70374VG" denotes Glc-NAc
GlycanIUPAC_T279 564-571 "http://rdf.glycoinfo.org/glycan/G45176LJ" denotes Glc-NAc
GlycanIUPAC_T280 564-571 "http://rdf.glycoinfo.org/glycan/G30874VW" denotes Glc-NAc
GlycanIUPAC_T281 564-571 "http://rdf.glycoinfo.org/glycan/G69333MI" denotes Glc-NAc
GlycanIUPAC_T282 564-571 "http://rdf.glycoinfo.org/glycan/G10676XO" denotes Glc-NAc
GlycanIUPAC_T283 564-571 "http://rdf.glycoinfo.org/glycan/G14843DJ" denotes Glc-NAc
GlycanIUPAC_T284 564-571 "http://rdf.glycoinfo.org/glycan/G47546FR" denotes Glc-NAc
GlycanIUPAC_T285 564-571 "http://rdf.glycoinfo.org/glycan/G73695ZM" denotes Glc-NAc
GlycanIUPAC_T286 564-571 "http://rdf.glycoinfo.org/glycan/G31923TJ" denotes Glc-NAc
GlycanIUPAC_T287 564-571 "http://rdf.glycoinfo.org/glycan/G60519EP" denotes Glc-NAc
GlycanIUPAC_T288 564-571 "http://rdf.glycoinfo.org/glycan/G07933IA" denotes Glc-NAc
GlycanIUPAC_T289 564-571 "http://rdf.glycoinfo.org/glycan/G40745NH" denotes Glc-NAc
GlycanIUPAC_T290 564-571 "http://rdf.glycoinfo.org/glycan/G54496YV" denotes Glc-NAc
GlycanIUPAC_T291 564-571 "http://rdf.glycoinfo.org/glycan/G62953SQ" denotes Glc-NAc
GlycanIUPAC_T292 564-571 "http://rdf.glycoinfo.org/glycan/G70070AY" denotes Glc-NAc
GlycanIUPAC_T293 564-571 "http://rdf.glycoinfo.org/glycan/G78792WC" denotes Glc-NAc
GlycanIUPAC_T294 564-571 "http://rdf.glycoinfo.org/glycan/G25238AV" denotes Glc-NAc
GlycanIUPAC_T295 564-571 "http://rdf.glycoinfo.org/glycan/G40510DP" denotes Glc-NAc
GlycanIUPAC_T296 564-571 "http://rdf.glycoinfo.org/glycan/G61120TK" denotes Glc-NAc
GlycanIUPAC_T297 564-571 "http://rdf.glycoinfo.org/glycan/G41342KV" denotes Glc-NAc
GlycanIUPAC_T298 564-571 "http://rdf.glycoinfo.org/glycan/G90703NA" denotes Glc-NAc
GlycanIUPAC_T299 564-571 "http://rdf.glycoinfo.org/glycan/G01591HR" denotes Glc-NAc
GlycanIUPAC_T300 564-571 "http://rdf.glycoinfo.org/glycan/G56520XN" denotes Glc-NAc
GlycanIUPAC_T301 564-571 "http://rdf.glycoinfo.org/glycan/G81830JX" denotes Glc-NAc

performance-test

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 1451-1456 http://purl.obolibrary.org/obo/UBERON_0002542 denotes scale

GlyCosmos15-Glycan

Id Subject Object Predicate Lexical cue image
T1 612-619 Glycan denotes Lewis-X https://api.glycosmos.org/wurcs2image/latest/png/binary/G00051MO

GlyCosmos15-Sentences

Id Subject Object Predicate Lexical cue
T1 0-147 Sentence denotes Application of restrained minimization, simulated annealing and molecular dynamics simulations for the conformational analysis of oligosaccharides.
T2 148-413 Sentence denotes The purpose of the present study was to determine the confidence with which the small number of 1H NMR nuclear Overhauser effect (NOE) distance constraints measurable across glycosidic linkages in oligosaccharides could be used for solution conformational analysis.
T3 414-642 Sentence denotes This was assessed by use of these constraints in restrained molecular mechanical minimization of the tetrasaccharide Gal beta 1----4(Fuc alpha 1----3)Glc-NAc beta 1----3Gal, a model compound of the Lewis-X antigenic determinant.
T4 643-777 Sentence denotes This presents a particularly severe test case in view of extreme resonance overlap and a dearth of inter-residue distance constraints.
T5 778-964 Sentence denotes It is concluded that these constraints, when used in conventional restrained minimization, result in the generation of 'virtual conformations' and local minima about glycosidic linkages.
T6 965-1330 Sentence denotes However, these restraints are nevertheless found to be useful in the initial stages of a conformational analysis strategy involving restrained minimization combined with dynamical simulated annealing to define more accurately the global minimum energy configuration, together with molecular dynamics simulation to explore conformational mobility about this minimum.
T7 1331-1552 Sentence denotes Theoretical ROE values calculated over the time course of the MD simulation, using a formalism appropriate for the time scale of the internal motion, are compared with those obtained experimentally in the oligosaccharide.

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 1451-1456 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542