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PubMed:12869764 JSONTXT

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Oryza-OGER

Id Subject Object Predicate Lexical cue
T1 0-10 http://www.ncbi.nlm.nih.gov/taxonomy/1768868 denotes Collection
T2 21-24 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T3 21-24 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T4 51-55 http://id.nlm.nih.gov/mesh/D018076 denotes cDNA
T5 51-55 http://purl.obolibrary.org/obo/SO_0000756 denotes cDNA
T6 77-81 http://id.nlm.nih.gov/mesh/D012275 denotes rice
T7 77-81 http://purl.bioontology.org/ontology/RXNORM/1311040 denotes rice
T8 77-81 http://www.ncbi.nlm.nih.gov/taxonomy/4530 denotes rice
T9 96-99 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T10 96-99 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T11 128-132 http://www.uniprot.org/uniprot/Q8N1N2 denotes full
T12 140-157 http://id.nlm.nih.gov/mesh/D018076 denotes complementary DNA
T13 140-157 http://purl.obolibrary.org/obo/SO_0000756 denotes complementary DNA
T14 154-157 http://id.nlm.nih.gov/mesh/D004247 denotes DNA
T15 154-157 http://purl.obolibrary.org/obo/SO_0000352 denotes DNA
T16 154-157 http://purl.obolibrary.org/obo/GO_0005574 denotes DNA
T17 154-157 http://purl.obolibrary.org/obo/CHEBI_16991 denotes DNA
T18 170-175 http://id.nlm.nih.gov/mesh/D012275 denotes Oryza
T19 170-182 http://www.ncbi.nlm.nih.gov/taxonomy/4530 denotes Oryza sativa
T20 170-182 http://id.nlm.nih.gov/mesh/D012275 denotes Oryza sativa
T21 186-189 http://www.uniprot.org/uniprot/D8KY57 denotes ssp
T22 186-189 http://purl.obolibrary.org/obo/PR_P0ACA3 denotes ssp
T23 186-189 http://purl.obolibrary.org/obo/UBERON_0002882 denotes ssp
T24 186-189 http://purl.obolibrary.org/obo/PR_000023992 denotes ssp
T25 186-189 http://purl.obolibrary.org/obo/PR_Q7XJT7 denotes ssp
T26 264-272 http://purl.obolibrary.org/obo/SO_0000001 denotes sequence
T27 301-308 http://purl.obolibrary.org/obo/CHEBI_11122 denotes protein
T28 301-308 http://purl.obolibrary.org/obo/SO_0000104 denotes protein
T29 301-308 http://purl.obolibrary.org/obo/PR_000000001 denotes protein
T30 301-308 http://purl.obolibrary.org/obo/CHEBI_16541 denotes protein
T31 301-308 http://purl.obolibrary.org/obo/GO_0003675 denotes protein
T32 301-308 http://purl.obolibrary.org/obo/CHEBI_36080 denotes protein
T33 361-365 http://id.nlm.nih.gov/mesh/D018076 denotes cDNA
T34 361-365 http://purl.obolibrary.org/obo/SO_0000756 denotes cDNA
T35 376-387 http://purl.obolibrary.org/obo/SO_0000991 denotes genomic DNA
T36 384-387 http://id.nlm.nih.gov/mesh/D004247 denotes DNA
T37 384-387 http://purl.obolibrary.org/obo/SO_0000352 denotes DNA
T38 384-387 http://purl.obolibrary.org/obo/GO_0005574 denotes DNA
T39 384-387 http://purl.obolibrary.org/obo/CHEBI_16991 denotes DNA
T40 408-411 http://purl.obolibrary.org/obo/SO_0001180 denotes are
T41 408-411 http://purl.obolibrary.org/obo/SO_0001853 denotes are
T42 429-442 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T43 456-460 http://id.nlm.nih.gov/mesh/D012275 denotes rice
T44 456-460 http://purl.bioontology.org/ontology/RXNORM/1311040 denotes rice
T45 456-460 http://www.ncbi.nlm.nih.gov/taxonomy/4530 denotes rice
T46 461-467 http://purl.obolibrary.org/obo/SO_0001026 denotes genome
T47 469-476 http://purl.obolibrary.org/obo/CHEBI_11122 denotes Protein
T48 469-476 http://purl.obolibrary.org/obo/SO_0000104 denotes Protein
T49 469-476 http://purl.obolibrary.org/obo/PR_000000001 denotes Protein
T50 469-476 http://purl.obolibrary.org/obo/CHEBI_16541 denotes Protein
T51 469-476 http://purl.obolibrary.org/obo/GO_0003675 denotes Protein
T52 469-476 http://purl.obolibrary.org/obo/CHEBI_36080 denotes Protein
T53 554-562 http://id.nlm.nih.gov/mesh/D011506 denotes proteins
T54 554-562 http://purl.obolibrary.org/obo/CHEBI_36080 denotes proteins
T55 576-580 http://id.nlm.nih.gov/mesh/D012275 denotes rice
T56 576-580 http://purl.bioontology.org/ontology/RXNORM/1311040 denotes rice
T57 576-580 http://www.ncbi.nlm.nih.gov/taxonomy/4530 denotes rice
T58 585-588 http://purl.obolibrary.org/obo/PR_Q9VVR1 denotes not
T59 585-588 http://purl.obolibrary.org/obo/PR_000011409 denotes not
T60 585-588 http://purl.obolibrary.org/obo/PR_P43354 denotes not
T61 585-588 http://purl.obolibrary.org/obo/PR_000003944 denotes not
T62 585-588 http://purl.obolibrary.org/obo/PR_Q5TIS6 denotes not
T63 585-588 http://purl.obolibrary.org/obo/PR_Q92685 denotes not
T64 585-588 http://purl.obolibrary.org/obo/PR_Q8K2A8 denotes not
T65 585-588 http://purl.obolibrary.org/obo/PR_000011336 denotes not
T66 592-603 http://id.nlm.nih.gov/mesh/D017360 denotes Arabidopsis
T67 637-640 http://purl.obolibrary.org/obo/SO_0001180 denotes are
T68 637-640 http://purl.obolibrary.org/obo/SO_0001853 denotes are
T69 641-651 http://purl.obolibrary.org/obo/SO_0000857 denotes homologous
T70 655-666 http://id.nlm.nih.gov/mesh/D017360 denotes Arabidopsis
T71 655-675 http://id.nlm.nih.gov/mesh/D029681 denotes Arabidopsis proteins
T72 667-675 http://id.nlm.nih.gov/mesh/D011506 denotes proteins
T73 667-675 http://purl.obolibrary.org/obo/CHEBI_36080 denotes proteins

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 68-81 hunflair:NA:Species denotes japonica rice
M_1 68-76 hunflair:NA:Species denotes japonica
M_2 191-199 hunflair:NA:Species denotes japonica
M_3 77-81 hunflair:NA:Species denotes rice
M_4 456-460 hunflair:NA:Species denotes rice
M_5 576-580 hunflair:NA:Species denotes rice
M_6 170-190 hunflair:NA:Species denotes Oryza sativa L. ssp.
M_7 592-603 hunflair:NA:Species denotes Arabidopsis
M_8 655-666 hunflair:NA:Species denotes Arabidopsis

OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 186-189 http://identifiers.org/oryzabase.gene/22325 denotes ssp
T2 200-202 http://identifiers.org/oryzabase.gene/22146 denotes cv
T59217 200-202 http://identifiers.org/ricegap/LOC_Os05g49940 denotes cv
T71151 200-202 http://identifiers.org/rapdb.locus/Os05g0575000 denotes cv
M_0 68-81 hunflair:NA:Species denotes japonica rice
M_1 68-76 hunflair:NA:Species denotes japonica
M_2 191-199 hunflair:NA:Species denotes japonica
M_3 77-81 hunflair:NA:Species denotes rice
M_4 456-460 hunflair:NA:Species denotes rice
M_5 576-580 hunflair:NA:Species denotes rice
M_6 170-190 hunflair:NA:Species denotes Oryza sativa L. ssp.
M_7 592-603 hunflair:NA:Species denotes Arabidopsis
M_8 655-666 hunflair:NA:Species denotes Arabidopsis

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-82 Sentence denotes Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
T2 83-203 Sentence denotes We collected and completely sequenced 28,469 full-length complementary DNA clones from Oryza sativa L. ssp. japonica cv.
T3 204-345 Sentence denotes Nipponbare. Through homology searches of publicly available sequence data, we assigned tentative protein functions to 21,596 clones (75.86%).
T4 346-468 Sentence denotes Mapping of the cDNA clones to genomic DNA revealed that there are 19,000 to 20,500 transcription units in the rice genome.
T5 469-676 Sentence denotes Protein informatics analysis against the InterPro database revealed the existence of proteins presented in rice but not in Arabidopsis. Sixty-four percent of our cDNAs are homologous to Arabidopsis proteins.
T1 0-82 Sentence denotes Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
T2 83-203 Sentence denotes We collected and completely sequenced 28,469 full-length complementary DNA clones from Oryza sativa L. ssp. japonica cv.
T3 204-345 Sentence denotes Nipponbare. Through homology searches of publicly available sequence data, we assigned tentative protein functions to 21,596 clones (75.86%).
T4 346-468 Sentence denotes Mapping of the cDNA clones to genomic DNA revealed that there are 19,000 to 20,500 transcription units in the rice genome.
T5 469-676 Sentence denotes Protein informatics analysis against the InterPro database revealed the existence of proteins presented in rice but not in Arabidopsis. Sixty-four percent of our cDNAs are homologous to Arabidopsis proteins.