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Oryza-OGER

Id Subject Object Predicate Lexical cue
T1 25-31 http://purl.obolibrary.org/obo/SO_0001026 denotes genome
T2 32-37 http://id.nlm.nih.gov/mesh/D012275 denotes Oryza
T3 58-62 http://purl.obolibrary.org/obo/SO_0000338 denotes MITE
T4 58-62 http://id.nlm.nih.gov/mesh/D008925 denotes MITE
T5 63-67 http://purl.obolibrary.org/obo/SO_0001830 denotes AFLP
T6 69-74 http://id.nlm.nih.gov/mesh/D008925 denotes MITEs
T7 86-94 http://purl.obolibrary.org/obo/SO_0001515 denotes inverted
T8 86-101 http://purl.obolibrary.org/obo/SO_0000294 denotes inverted-repeat
T9 95-101 http://purl.obolibrary.org/obo/SO_0001068 denotes repeat
T10 102-123 http://id.nlm.nih.gov/mesh/D004251 denotes transposable elements
T11 115-123 http://id.nlm.nih.gov/mesh/D004602 denotes elements
T12 115-123 http://purl.obolibrary.org/obo/CHEBI_33250 denotes elements
T13 115-123 http://id.nlm.nih.gov/mesh/D004602 denotes elements
T14 125-128 http://purl.obolibrary.org/obo/SO_0001180 denotes are
T15 125-128 http://purl.obolibrary.org/obo/SO_0001853 denotes are
T16 139-160 http://id.nlm.nih.gov/mesh/D004251 denotes transposable elements
T17 152-160 http://id.nlm.nih.gov/mesh/D004602 denotes elements
T18 152-160 http://purl.obolibrary.org/obo/CHEBI_33250 denotes elements
T19 152-160 http://id.nlm.nih.gov/mesh/D004602 denotes elements
T20 164-169 http://id.nlm.nih.gov/mesh/D012275 denotes Oryza
T21 199-203 http://purl.obolibrary.org/obo/SO_0000338 denotes MITE
T22 199-203 http://id.nlm.nih.gov/mesh/D008925 denotes MITE
T23 204-208 http://purl.obolibrary.org/obo/SO_0001830 denotes AFLP
T24 250-253 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T25 250-253 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T26 285-291 http://purl.obolibrary.org/obo/SO_0001026 denotes genome
T27 292-297 http://id.nlm.nih.gov/mesh/D012275 denotes Oryza
T28 325-328 http://purl.obolibrary.org/obo/PR_000017371 denotes was
T29 325-328 http://purl.obolibrary.org/obo/PR_P42768 denotes was
T30 325-328 http://purl.obolibrary.org/obo/PR_P70315 denotes was
T31 325-328 http://id.nlm.nih.gov/mesh/D014923 denotes was
T32 345-348 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T33 345-348 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T34 415-420 http://id.nlm.nih.gov/mesh/D012275 denotes Oryza
T35 415-427 http://www.ncbi.nlm.nih.gov/taxonomy/4530 denotes Oryza sativa
T36 415-427 http://id.nlm.nih.gov/mesh/D012275 denotes Oryza sativa
T37 428-431 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T38 428-431 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T39 432-437 http://id.nlm.nih.gov/mesh/D012275 denotes Oryza
T40 432-448 http://www.ncbi.nlm.nih.gov/taxonomy/4538 denotes Oryza glaberrima
T41 450-453 http://purl.obolibrary.org/obo/PR_000017371 denotes was
T42 450-453 http://purl.obolibrary.org/obo/PR_P42768 denotes was
T43 450-453 http://purl.obolibrary.org/obo/PR_P70315 denotes was
T44 450-453 http://id.nlm.nih.gov/mesh/D014923 denotes was
T45 566-572 http://purl.obolibrary.org/obo/SO_0001026 denotes genome
T46 610-613 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T47 610-613 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T48 614-619 http://id.nlm.nih.gov/mesh/D012275 denotes Oryza
T49 614-627 http://www.ncbi.nlm.nih.gov/taxonomy/65489 denotes Oryza barthii
T50 684-689 http://id.nlm.nih.gov/mesh/D012275 denotes Oryza
T51 684-699 http://www.ncbi.nlm.nih.gov/taxonomy/4529 denotes Oryza rufipogon
T52 701-704 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T53 701-704 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T54 705-710 http://id.nlm.nih.gov/mesh/D012275 denotes Oryza
T55 719-722 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T56 719-722 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T57 740-745 http://id.nlm.nih.gov/mesh/D012275 denotes Oryza
T58 740-758 http://www.ncbi.nlm.nih.gov/taxonomy/40149 denotes Oryza meridionalis
T59 792-797 http://id.nlm.nih.gov/mesh/D012275 denotes Oryza
T60 792-812 http://www.ncbi.nlm.nih.gov/taxonomy/4528 denotes Oryza longistaminata
T61 922-932 http://purl.obolibrary.org/obo/SO_0000857 denotes homologous
T62 952-962 http://purl.obolibrary.org/obo/CHEBI_36976 denotes nucleotide
T63 989-993 http://purl.obolibrary.org/obo/SO_0000338 denotes MITE
T64 989-993 http://id.nlm.nih.gov/mesh/D008925 denotes MITE
T65 994-998 http://purl.obolibrary.org/obo/SO_0001830 denotes AFLP
T66 1027-1031 http://purl.obolibrary.org/obo/CHEBI_15414 denotes same
T67 1080-1088 http://purl.obolibrary.org/obo/SO_0000001 denotes sequence
T68 1132-1138 http://purl.obolibrary.org/obo/SO_0001026 denotes genome
T69 1206-1209 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T70 1206-1209 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T71 1223-1226 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T72 1223-1226 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T73 1293-1297 http://purl.obolibrary.org/obo/PR_000024065 denotes this
T74 1293-1297 http://purl.obolibrary.org/obo/PR_O32583 denotes this
T75 1326-1330 http://purl.obolibrary.org/obo/SO_0000338 denotes MITE
T76 1326-1330 http://id.nlm.nih.gov/mesh/D008925 denotes MITE
T77 1331-1335 http://purl.obolibrary.org/obo/SO_0001830 denotes AFLP
T78 1358-1361 http://purl.obolibrary.org/obo/PR_Q9NZC7 denotes for
T79 1358-1361 http://purl.obolibrary.org/obo/PR_000001036 denotes for
T80 1393-1396 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T81 1393-1396 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T82 1421-1425 http://id.nlm.nih.gov/mesh/D012275 denotes rice
T83 1421-1425 http://purl.bioontology.org/ontology/RXNORM/1311040 denotes rice
T84 1421-1425 http://www.ncbi.nlm.nih.gov/taxonomy/4530 denotes rice

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 705-717 hunflair:NA:Species denotes Oryza nivara
M_1 684-699 hunflair:NA:Species denotes Oryza rufipogon
M_2 740-758 hunflair:NA:Species denotes Oryza meridionalis
M_3 415-427 hunflair:NA:Species denotes Oryza sativa
M_4 614-627 hunflair:NA:Species denotes Oryza barthii
M_5 432-448 hunflair:NA:Species denotes Oryza glaberrima
M_6 1421-1425 hunflair:NA:Species denotes rice
M_7 596-609 hunflair:NA:Species denotes O. glaberrima
M_8 673-682 hunflair:NA:Species denotes O. sativa
M_9 792-812 hunflair:NA:Species denotes Oryza longistaminata
M_10 661-671 hunflair:NA:Species denotes Asian taxa

OryzaGP_2021

Id Subject Object Predicate Lexical cue
M_0 705-717 hunflair:NA:Species denotes Oryza nivara
M_1 684-699 hunflair:NA:Species denotes Oryza rufipogon
M_2 740-758 hunflair:NA:Species denotes Oryza meridionalis
M_3 415-427 hunflair:NA:Species denotes Oryza sativa
M_4 614-627 hunflair:NA:Species denotes Oryza barthii
M_5 432-448 hunflair:NA:Species denotes Oryza glaberrima
M_6 1421-1425 hunflair:NA:Species denotes rice
M_7 596-609 hunflair:NA:Species denotes O. glaberrima
M_8 673-682 hunflair:NA:Species denotes O. sativa
M_9 792-812 hunflair:NA:Species denotes Oryza longistaminata
M_10 661-671 hunflair:NA:Species denotes Asian taxa

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-68 Sentence denotes Genetic variations of AA genome Oryza species measured by MITE-AFLP.
T2 69-178 Sentence denotes MITEs (miniature inverted-repeat transposable elements) are the major transposable elements in Oryza species.
T3 179-306 Sentence denotes We have applied the MITE-AFLP technique to study the genetic variation and species relationship in the AA-genome Oryza species.
T4 307-365 Sentence denotes High polymorphism was detected within and between species.
T5 366-511 Sentence denotes The genetic variation in the cultivated species, Oryza sativa and Oryza glaberrima, was comparatively lower than in their ancestral wild species.
T6 512-759 Sentence denotes In comparison between geographical lineages of the AA genome species, African taxa, O. glaberrima and Oryza barthii, showed lower variation than the Asian taxa, O. sativa, Oryza rufipogon, and Oryza nivara, and Australian taxon Oryza meridionalis.
T7 760-844 Sentence denotes However, another African taxon, Oryza longistaminata, showed high genetic variation.
T8 845-1098 Sentence denotes Species relationships were analyzed by the pattern of presence or absence of homologous fragments, because nucleotide sequences of the detected MITE-AFLP fragments revealed that the same fragments in different species shared very high sequence homology.
T9 1099-1281 Sentence denotes The clustering pattern of the AA-genome species matched well with the geographical origins (Asian, African and Australian), and with the Australian taxon being distant to the others.
T10 1282-1426 Sentence denotes Therefore, this study demonstrated that the MITE-AFLP technique is amenable for studying the genetic variation and species relationship in rice.