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PubMed:12773478 JSONTXT

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Glycan-Motif

Id Subject Object Predicate Lexical cue
T1 1159-1170 https://glytoucan.org/Structures/Glycans/G43702JT denotes chondroitin

GlyCosmos6-Glycan-Motif-Image

Id Subject Object Predicate Lexical cue image
T1 1159-1170 Glycan_Motif denotes chondroitin https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G43702JT

Glycosmos6-GlycoEpitope

Id Subject Object Predicate Lexical cue
T1 1139-1154 http://www.glycoepitope.jp/epitopes/EP0086 denotes heparan sulfate
T2 1159-1170 http://www.glycoepitope.jp/epitopes/EP0081 denotes chondroitin

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-148 Sentence denotes Improved and simple micro assay for sulfated glycosaminoglycans quantification in biological extracts and its use in skin and muscle tissue studies.
TextSentencer_T2 149-398 Sentence denotes This article describes a simple and selective procedure used for direct measurement of sulfated glycosaminoglycans (GAGs) in biological samples and its application to the determination of GAGs during tissue regeneration and myogenic differentiation.
TextSentencer_T3 399-519 Sentence denotes We describe a modified procedure of previous GAG assays that has improved specificity, reproducibility, and sensitivity.
TextSentencer_T4 520-623 Sentence denotes The assay is based on the ability of sulfated GAGs to bind the cationic dye 1,9-dimethylmethylene blue.
TextSentencer_T5 624-691 Sentence denotes We describe conditions that allow isolation of the GAG-dye complex.
TextSentencer_T6 692-832 Sentence denotes This complex was dissociated; the optical density measurement of the dissociated dye permitted quantification of GAGs in biological samples.
TextSentencer_T7 833-1054 Sentence denotes Applied to the study of myogenic cell differentiation in vitro, muscle repair, and skin ulceration, this method revealed significant modifications in the patterns of expression of different sulfated GAGs in these tissues.
TextSentencer_T8 1055-1228 Sentence denotes In particular, application of the method after nitrous acid treatment revealed that heparan sulfate and chondroitin sulfate ratio changed during muscle regeneration process.
T1 0-148 Sentence denotes Improved and simple micro assay for sulfated glycosaminoglycans quantification in biological extracts and its use in skin and muscle tissue studies.
T2 149-398 Sentence denotes This article describes a simple and selective procedure used for direct measurement of sulfated glycosaminoglycans (GAGs) in biological samples and its application to the determination of GAGs during tissue regeneration and myogenic differentiation.
T3 399-519 Sentence denotes We describe a modified procedure of previous GAG assays that has improved specificity, reproducibility, and sensitivity.
T4 520-623 Sentence denotes The assay is based on the ability of sulfated GAGs to bind the cationic dye 1,9-dimethylmethylene blue.
T5 624-691 Sentence denotes We describe conditions that allow isolation of the GAG-dye complex.
T6 692-832 Sentence denotes This complex was dissociated; the optical density measurement of the dissociated dye permitted quantification of GAGs in biological samples.
T7 833-1054 Sentence denotes Applied to the study of myogenic cell differentiation in vitro, muscle repair, and skin ulceration, this method revealed significant modifications in the patterns of expression of different sulfated GAGs in these tissues.
T8 1055-1228 Sentence denotes In particular, application of the method after nitrous acid treatment revealed that heparan sulfate and chondroitin sulfate ratio changed during muscle regeneration process.
T1 0-148 Sentence denotes Improved and simple micro assay for sulfated glycosaminoglycans quantification in biological extracts and its use in skin and muscle tissue studies.
T2 149-398 Sentence denotes This article describes a simple and selective procedure used for direct measurement of sulfated glycosaminoglycans (GAGs) in biological samples and its application to the determination of GAGs during tissue regeneration and myogenic differentiation.
T3 399-519 Sentence denotes We describe a modified procedure of previous GAG assays that has improved specificity, reproducibility, and sensitivity.
T4 520-623 Sentence denotes The assay is based on the ability of sulfated GAGs to bind the cationic dye 1,9-dimethylmethylene blue.
T5 624-691 Sentence denotes We describe conditions that allow isolation of the GAG-dye complex.
T6 692-832 Sentence denotes This complex was dissociated; the optical density measurement of the dissociated dye permitted quantification of GAGs in biological samples.
T7 833-1054 Sentence denotes Applied to the study of myogenic cell differentiation in vitro, muscle repair, and skin ulceration, this method revealed significant modifications in the patterns of expression of different sulfated GAGs in these tissues.
T8 1055-1228 Sentence denotes In particular, application of the method after nitrous acid treatment revealed that heparan sulfate and chondroitin sulfate ratio changed during muscle regeneration process.

GlyCosmos6-Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T1 1159-1170 https://glytoucan.org/Structures/Glycans/G43702JT denotes chondroitin

Glycosmos6-MAT

Id Subject Object Predicate Lexical cue
T1 117-121 http://purl.obolibrary.org/obo/MAT_0000284 denotes skin
T2 126-132 http://purl.obolibrary.org/obo/MAT_0000025 denotes muscle
T3 897-903 http://purl.obolibrary.org/obo/MAT_0000025 denotes muscle
T4 916-920 http://purl.obolibrary.org/obo/MAT_0000284 denotes skin
T5 1200-1206 http://purl.obolibrary.org/obo/MAT_0000025 denotes muscle

PubmedHPO

Id Subject Object Predicate Lexical cue
T1 916-931 HP_0200042 denotes skin ulceration

GlycoBiology-FMA

Id Subject Object Predicate Lexical cue
_T1 45-63 FMAID:63011 denotes glycosaminoglycans
_T2 45-63 FMAID:167395 denotes glycosaminoglycans
_T3 117-121 FMAID:7163 denotes skin
_T4 117-121 FMAID:93597 denotes skin
_T5 126-132 FMAID:123535 denotes muscle
_T6 126-132 FMAID:30316 denotes muscle
_T7 126-132 FMAID:172175 denotes muscle
_T8 126-139 FMAID:256074 denotes muscle tissue
_T9 133-139 FMAID:256050 denotes tissue
_T10 174-184 FMAID:165655 denotes simple and
_T11 174-184 FMAID:62083 denotes simple and
_T12 245-263 FMAID:63011 denotes glycosaminoglycans
_T13 245-263 FMAID:167395 denotes glycosaminoglycans
_T14 265-269 FMAID:167404 denotes GAGs
_T15 337-341 FMAID:167404 denotes GAGs
_T16 349-355 FMAID:256050 denotes tissue
_T17 444-447 FMAID:167404 denotes GAG
_T18 566-570 FMAID:167404 denotes GAGs
_T19 675-678 FMAID:167404 denotes GAG
_T20 679-704 FMAID:84870 denotes dye complex. This complex
_T21 679-704 FMAID:199183 denotes dye complex. This complex
_T22 683-704 FMAID:62316 denotes complex. This complex
_T23 683-704 FMAID:162310 denotes complex. This complex
_T24 683-704 FMAID:165838 denotes complex. This complex
_T25 683-704 FMAID:63843 denotes complex. This complex
_T26 805-809 FMAID:167404 denotes GAGs
_T27 897-903 FMAID:123535 denotes muscle
_T28 897-903 FMAID:172175 denotes muscle
_T29 897-903 FMAID:30316 denotes muscle
_T30 912-920 FMAID:209048 denotes and skin
_T31 916-920 FMAID:7163 denotes skin
_T32 916-920 FMAID:93597 denotes skin
_T33 1032-1036 FMAID:167404 denotes GAGs
_T34 1046-1053 FMAID:256050 denotes tissues
_T35 1139-1146 FMAID:67110 denotes heparan
_T36 1139-1146 FMAID:165191 denotes heparan
_T37 1139-1154 FMAID:63023 denotes heparan sulfate
_T38 1139-1154 FMAID:167405 denotes heparan sulfate
_T39 1159-1178 FMAID:196838 denotes chondroitin sulfate
_T40 1159-1178 FMAID:82837 denotes chondroitin sulfate
_T41 1200-1206 FMAID:172175 denotes muscle
_T42 1200-1206 FMAID:123535 denotes muscle
_T43 1200-1206 FMAID:30316 denotes muscle

GlycoBiology-NCBITAXON

Id Subject Object Predicate Lexical cue
T1 20-25 http://purl.bioontology.org/ontology/NCBITAXON/82411 denotes micro
T2 133-139 http://purl.bioontology.org/ontology/STY/T024 denotes tissue
T3 349-355 http://purl.bioontology.org/ontology/STY/T024 denotes tissue
T4 1046-1053 http://purl.bioontology.org/ontology/STY/T024 denotes tissues

GO-BP

Id Subject Object Predicate Lexical cue
T1 36-44 http://purl.obolibrary.org/obo/GO_0051923 denotes sulfated
T2 236-244 http://purl.obolibrary.org/obo/GO_0051923 denotes sulfated
T3 557-565 http://purl.obolibrary.org/obo/GO_0051923 denotes sulfated
T4 1023-1031 http://purl.obolibrary.org/obo/GO_0051923 denotes sulfated
T5 1147-1154 http://purl.obolibrary.org/obo/GO_0051923 denotes sulfate
T6 1171-1178 http://purl.obolibrary.org/obo/GO_0051923 denotes sulfate
T7 349-368 http://purl.obolibrary.org/obo/GO_0042246 denotes tissue regeneration
T8 356-368 http://purl.obolibrary.org/obo/GO_0031099 denotes regeneration
T9 1207-1219 http://purl.obolibrary.org/obo/GO_0031099 denotes regeneration
T10 507-518 http://purl.obolibrary.org/obo/GO_0046960 denotes sensitivity
T11 866-886 http://purl.obolibrary.org/obo/GO_0030154 denotes cell differentiation

GO-MF

Id Subject Object Predicate Lexical cue
T1 574-578 http://purl.obolibrary.org/obo/GO_0070026 denotes bind
T2 574-578 http://purl.obolibrary.org/obo/GO_0003680 denotes bind
T3 574-578 http://purl.obolibrary.org/obo/GO_0017091 denotes bind
T4 574-578 http://purl.obolibrary.org/obo/GO_0005488 denotes bind
T5 574-591 http://purl.obolibrary.org/obo/GO_0043169 denotes bind the cationic

GO-CC

Id Subject Object Predicate Lexical cue
T1 866-870 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

UBERON-AE

Id Subject Object Predicate Lexical cue
T1 126-139 http://purl.obolibrary.org/obo/UBERON_0002385 denotes muscle tissue
T2 133-139 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissue
T3 349-355 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissue
T4 1046-1053 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissues

EDAM-topics

Id Subject Object Predicate Lexical cue
T1 140-147 http://edamontology.org/topic_3678 denotes studies
T2 285-292 http://edamontology.org/topic_3277 denotes samples
T3 824-831 http://edamontology.org/topic_3277 denotes samples
T4 848-853 http://edamontology.org/topic_3678 denotes study

EDAM-DFO

Id Subject Object Predicate Lexical cue
T1 64-78 http://edamontology.org/operation_3630 denotes quantification
T2 154-161 http://edamontology.org/data_0971 denotes article
T3 221-232 http://edamontology.org/data_3108 denotes measurement
T4 742-753 http://edamontology.org/data_3108 denotes measurement
T5 787-801 http://edamontology.org/operation_3630 denotes quantification
T6 1220-1227 http://edamontology.org/operation_0004 denotes process
T7 1220-1227 http://edamontology.org/operation_2409 denotes process

GlycoBiology-MAT

Id Subject Object Predicate Lexical cue
T1 117-121 http://purl.obolibrary.org/obo/MAT_0000284 denotes skin
T2 126-132 http://purl.obolibrary.org/obo/MAT_0000025 denotes muscle
T3 897-903 http://purl.obolibrary.org/obo/MAT_0000025 denotes muscle
T4 916-920 http://purl.obolibrary.org/obo/MAT_0000284 denotes skin
T5 1200-1206 http://purl.obolibrary.org/obo/MAT_0000025 denotes muscle

GlycoBiology-Motifs

Id Subject Object Predicate Lexical cue
T1 1159-1170 http://rdf.glycoinfo.org/glycan/G00018MO denotes chondroitin
T2 1159-1178 http://rdf.glycoinfo.org/glycan/G00018MO denotes chondroitin sulfate

GlycoBiology-Epitope

Id Subject Object Predicate Lexical cue
PD-GlycoEpitope-B_T1 1159-1170 http://www.glycoepitope.jp/epitopes/EP0081 denotes chondroitin
PD-GlycoEpitope-B_T2 1139-1154 http://www.glycoepitope.jp/epitopes/EP0086 denotes heparan sulfate

performance-test

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 133-139 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissue
PD-UBERON-AE-B_T2 349-355 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissue
PD-UBERON-AE-B_T3 1046-1053 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissues
PD-UBERON-AE-B_T4 126-139 http://purl.obolibrary.org/obo/UBERON_0002385 denotes muscle tissue

GlyCosmos15-Glycan

Id Subject Object Predicate Lexical cue image
T1 1159-1170 Glycan denotes chondroitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G43702JT
T2 1139-1154 Glycan denotes heparan sulfate https://api.glycosmos.org/wurcs2image/latest/png/binary/G17927IW

Anatomy-MAT

Id Subject Object Predicate Lexical cue mat_id
T1 117-121 Body_part denotes skin http://purl.obolibrary.org/obo/MAT_0000284
T2 126-132 Body_part denotes muscle http://purl.obolibrary.org/obo/MAT_0000025
T3 897-903 Body_part denotes muscle http://purl.obolibrary.org/obo/MAT_0000025
T4 916-920 Body_part denotes skin http://purl.obolibrary.org/obo/MAT_0000284
T5 1200-1206 Body_part denotes muscle http://purl.obolibrary.org/obo/MAT_0000025

mondo_disease

Id Subject Object Predicate Lexical cue mondo_id
T1 921-931 Disease denotes ulceration http://purl.obolibrary.org/obo/MONDO_0043839

Glycan-GlyCosmos

Id Subject Object Predicate Lexical cue image
T1 1159-1170 Glycan denotes chondroitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G43702JT
T2 1139-1154 Glycan denotes heparan sulfate https://api.glycosmos.org/wurcs2image/latest/png/binary/G17927IW

GlyCosmos-GlycoEpitope

Id Subject Object Predicate Lexical cue glycoepitope_id
T1 1139-1154 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes heparan sulfate http://www.glycoepitope.jp/epitopes/EP0086
T2 1159-1170 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes chondroitin http://www.glycoepitope.jp/epitopes/EP0081

GlyCosmos15-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 117-121 Body_part denotes skin http://purl.obolibrary.org/obo/UBERON_0000014|http://purl.obolibrary.org/obo/UBERON_0001003|http://purl.obolibrary.org/obo/UBERON_0002097|http://purl.obolibrary.org/obo/UBERON_0002199
T5 126-139 Body_part denotes muscle tissue http://purl.obolibrary.org/obo/UBERON_0002385
T6 349-355 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T7 897-903 Body_part denotes muscle http://purl.obolibrary.org/obo/UBERON_0001630|http://purl.obolibrary.org/obo/UBERON_0005090
T9 916-920 Body_part denotes skin http://purl.obolibrary.org/obo/UBERON_0000014|http://purl.obolibrary.org/obo/UBERON_0001003|http://purl.obolibrary.org/obo/UBERON_0002097|http://purl.obolibrary.org/obo/UBERON_0002199
T13 1200-1206 Body_part denotes muscle http://purl.obolibrary.org/obo/UBERON_0001630|http://purl.obolibrary.org/obo/UBERON_0005090

GlyCosmos15-GlycoEpitope

Id Subject Object Predicate Lexical cue glycoepitope_id
T1 1139-1154 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes heparan sulfate http://www.glycoepitope.jp/epitopes/EP0086
T2 1159-1170 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes chondroitin http://www.glycoepitope.jp/epitopes/EP0081

GlyCosmos15-Sentences

Id Subject Object Predicate Lexical cue
T1 0-148 Sentence denotes Improved and simple micro assay for sulfated glycosaminoglycans quantification in biological extracts and its use in skin and muscle tissue studies.
T2 149-398 Sentence denotes This article describes a simple and selective procedure used for direct measurement of sulfated glycosaminoglycans (GAGs) in biological samples and its application to the determination of GAGs during tissue regeneration and myogenic differentiation.
T3 399-519 Sentence denotes We describe a modified procedure of previous GAG assays that has improved specificity, reproducibility, and sensitivity.
T4 520-623 Sentence denotes The assay is based on the ability of sulfated GAGs to bind the cationic dye 1,9-dimethylmethylene blue.
T5 624-691 Sentence denotes We describe conditions that allow isolation of the GAG-dye complex.
T6 692-832 Sentence denotes This complex was dissociated; the optical density measurement of the dissociated dye permitted quantification of GAGs in biological samples.
T7 833-1054 Sentence denotes Applied to the study of myogenic cell differentiation in vitro, muscle repair, and skin ulceration, this method revealed significant modifications in the patterns of expression of different sulfated GAGs in these tissues.
T8 1055-1228 Sentence denotes In particular, application of the method after nitrous acid treatment revealed that heparan sulfate and chondroitin sulfate ratio changed during muscle regeneration process.

GlyCosmos15-FMA

Id Subject Object Predicate Lexical cue db_id
T1 117-121 Body_part denotes skin FMA:7163
T2 126-139 Body_part denotes muscle tissue FMA:9641
T3 349-355 Body_part denotes tissue FMA:9637
T4 897-903 Body_part denotes muscle FMA:32558
T5 916-920 Body_part denotes skin FMA:7163
T6 1046-1053 Body_part denotes tissues FMA:9637
T7 1200-1206 Body_part denotes muscle FMA:32558

GlyCosmos15-MAT

Id Subject Object Predicate Lexical cue mat_id
T1 117-121 Body_part denotes skin http://purl.obolibrary.org/obo/MAT_0000284
T2 126-132 Body_part denotes muscle http://purl.obolibrary.org/obo/MAT_0000025
T3 897-903 Body_part denotes muscle http://purl.obolibrary.org/obo/MAT_0000025
T4 916-920 Body_part denotes skin http://purl.obolibrary.org/obo/MAT_0000284
T5 1200-1206 Body_part denotes muscle http://purl.obolibrary.org/obo/MAT_0000025

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 117-121 Body_part denotes skin http://purl.obolibrary.org/obo/UBERON_0000014|http://purl.obolibrary.org/obo/UBERON_0001003|http://purl.obolibrary.org/obo/UBERON_0002097|http://purl.obolibrary.org/obo/UBERON_0002199
T5 126-139 Body_part denotes muscle tissue http://purl.obolibrary.org/obo/UBERON_0002385
T6 349-355 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T7 897-903 Body_part denotes muscle http://purl.obolibrary.org/obo/UBERON_0001630|http://purl.obolibrary.org/obo/UBERON_0005090
T9 916-920 Body_part denotes skin http://purl.obolibrary.org/obo/UBERON_0000014|http://purl.obolibrary.org/obo/UBERON_0001003|http://purl.obolibrary.org/obo/UBERON_0002097|http://purl.obolibrary.org/obo/UBERON_0002199
T13 1200-1206 Body_part denotes muscle http://purl.obolibrary.org/obo/UBERON_0001630|http://purl.obolibrary.org/obo/UBERON_0005090