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PubMed:12581311 JSONTXT

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Oryza-OGER

Id Subject Object Predicate Lexical cue
T1 10-13 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T2 10-13 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T3 32-36 http://id.nlm.nih.gov/mesh/D012275 denotes rice
T4 32-36 http://purl.bioontology.org/ontology/RXNORM/1311040 denotes rice
T5 32-36 http://www.ncbi.nlm.nih.gov/taxonomy/4530 denotes rice
T6 37-44 http://purl.obolibrary.org/obo/SO_0000180 denotes class-I
T7 50-57 http://id.nlm.nih.gov/mesh/D006657 denotes histone
T8 50-57 http://purl.obolibrary.org/obo/CHEBI_15358 denotes histone
T9 50-57 http://purl.obolibrary.org/obo/PR_000041244 denotes histone
T10 50-69 http://id.nlm.nih.gov/mesh/D006655 denotes histone deacetylase
T11 76-83 http://www.uniprot.org/uniprot/Q7Y0Y8 denotes OsHDAC1
T12 76-83 HDAC1 denotes OsHDAC1
T13 84-85 AMT1;2 denotes 3
T14 87-94 http://www.uniprot.org/uniprot/Q7Y0Y8 denotes OsHDAC1
T15 87-94 HDAC1 denotes OsHDAC1
T16 113-123 http://purl.obolibrary.org/obo/SO_0000781 denotes transgenic
T17 113-130 http://id.nlm.nih.gov/mesh/D030821 denotes transgenic plants
T18 124-130 http://id.nlm.nih.gov/mesh/D010944 denotes plants
T19 150-156 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T20 162-165 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T21 162-165 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T22 188-195 http://id.nlm.nih.gov/mesh/D006657 denotes Histone
T23 188-195 http://purl.obolibrary.org/obo/CHEBI_15358 denotes Histone
T24 188-195 http://purl.obolibrary.org/obo/PR_000041244 denotes Histone
T25 188-208 http://id.nlm.nih.gov/mesh/D006655 denotes Histone deacetylases
T26 226-235 http://id.nlm.nih.gov/mesh/D002843 denotes chromatin
T27 226-235 http://purl.obolibrary.org/obo/GO_0000785 denotes chromatin
T28 246-249 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T29 246-249 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T30 250-263 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T31 326-339 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T32 357-361 http://id.nlm.nih.gov/mesh/D012275 denotes rice
T33 357-361 http://purl.bioontology.org/ontology/RXNORM/1311040 denotes rice
T34 357-361 http://www.ncbi.nlm.nih.gov/taxonomy/4530 denotes rice
T35 362-369 http://www.uniprot.org/uniprot/Q7Y0Y8 denotes OsHDAC1
T36 362-369 HDAC1 denotes OsHDAC1
T37 370-371 AMT1;2 denotes 3
T38 378-381 http://purl.obolibrary.org/obo/PR_Q9NZC7 denotes for
T39 378-381 http://purl.obolibrary.org/obo/PR_000001036 denotes for
T40 382-389 http://purl.obolibrary.org/obo/SO_0000180 denotes class I
T41 395-402 http://id.nlm.nih.gov/mesh/D006657 denotes histone
T42 395-402 http://purl.obolibrary.org/obo/CHEBI_15358 denotes histone
T43 395-402 http://purl.obolibrary.org/obo/PR_000041244 denotes histone
T44 395-415 http://id.nlm.nih.gov/mesh/D006655 denotes histone deacetylases
T45 423-426 http://purl.obolibrary.org/obo/SO_0001180 denotes are
T46 423-426 http://purl.obolibrary.org/obo/SO_0001853 denotes are
T47 442-446 http://purl.obolibrary.org/obo/PR_Q94517 denotes RPD3
T48 442-446 http://purl.obolibrary.org/obo/PR_P32561 denotes RPD3
T49 445-446 AMT1;2 denotes 3
T50 459-466 http://www.uniprot.org/uniprot/Q7Y0Y8 denotes OsHDAC1
T51 459-466 HDAC1 denotes OsHDAC1
T52 467-471 http://purl.obolibrary.org/obo/SO_0000704 denotes gene
T53 480-489 http://www.uniprot.org/uniprot/P98005 denotes a protein
T54 480-489 http://www.uniprot.org/uniprot/P09676 denotes a protein
T55 480-489 http://www.uniprot.org/uniprot/P07928 denotes a protein
T56 480-489 http://www.uniprot.org/uniprot/P15966 denotes a protein
T57 480-489 http://www.uniprot.org/uniprot/P03610 denotes a protein
T58 480-489 http://www.uniprot.org/uniprot/P25244 denotes a protein
T59 480-489 http://www.uniprot.org/uniprot/P07394 denotes a protein
T60 480-489 http://www.uniprot.org/uniprot/P03632 denotes a protein
T61 480-489 http://www.uniprot.org/uniprot/P25243 denotes a protein
T62 480-489 http://www.uniprot.org/uniprot/P35823 denotes a protein
T63 480-489 http://www.uniprot.org/uniprot/O64306 denotes a protein
T64 482-489 http://purl.obolibrary.org/obo/CHEBI_11122 denotes protein
T65 482-489 http://purl.obolibrary.org/obo/SO_0000104 denotes protein
T66 482-489 http://purl.obolibrary.org/obo/PR_000000001 denotes protein
T67 482-489 http://purl.obolibrary.org/obo/CHEBI_16541 denotes protein
T68 482-489 http://purl.obolibrary.org/obo/GO_0003675 denotes protein
T69 482-489 http://purl.obolibrary.org/obo/CHEBI_36080 denotes protein
T70 544-547 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T71 544-547 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T72 554-559 http://purl.obolibrary.org/obo/CHEBI_46882 denotes amino
T73 554-564 http://purl.obolibrary.org/obo/SO_0001237 denotes amino acid
T74 554-564 http://purl.obolibrary.org/obo/CHEBI_33709 denotes amino acid
T75 554-564 http://purl.obolibrary.org/obo/CHEBI_33704 denotes amino acid
T76 560-564 http://purl.obolibrary.org/obo/CHEBI_37527 denotes acid
T77 565-573 http://purl.obolibrary.org/obo/SO_0000001 denotes sequence
T78 592-599 HDAC2 denotes OsHDAC2
T79 592-599 http://www.uniprot.org/uniprot/Q6YV04 denotes OsHDAC2
T80 598-599 AMT1;3 denotes 2
T81 601-608 http://www.uniprot.org/uniprot/Q7Y0Y6 denotes OsHDAC3
T82 601-608 HDAC3 denotes OsHDAC3
T83 607-608 AMT1;2 denotes 3
T84 610-615 http://www.ncbi.nlm.nih.gov/taxonomy/4577 denotes maize
T85 610-615 http://id.nlm.nih.gov/mesh/D003313 denotes maize
T86 616-620 http://purl.obolibrary.org/obo/PR_Q94517 denotes RPD3
T87 616-620 http://purl.obolibrary.org/obo/PR_P32561 denotes RPD3
T88 619-620 AMT1;2 denotes 3
T89 622-625 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T90 622-625 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T91 626-631 http://id.nlm.nih.gov/mesh/D006801 denotes human
T92 626-631 http://www.ncbi.nlm.nih.gov/taxonomy/9606 denotes human
T93 632-636 http://purl.obolibrary.org/obo/PR_Q54VQ7 denotes HDAC
T94 632-637 http://purl.obolibrary.org/obo/PR_Q13547 denotes HDAC1
T95 632-637 http://purl.obolibrary.org/obo/PR_P56517 denotes HDAC1
T96 632-637 http://purl.obolibrary.org/obo/PR_000008478 denotes HDAC1
T97 632-637 http://purl.obolibrary.org/obo/PR_Q4QQW4 denotes HDAC1
T98 632-637 http://purl.obolibrary.org/obo/PR_O09106 denotes HDAC1
T99 632-637 http://purl.obolibrary.org/obo/PR_Q94517 denotes HDAC1
T100 638-646 http://id.nlm.nih.gov/mesh/D011506 denotes proteins
T101 638-646 http://purl.obolibrary.org/obo/CHEBI_36080 denotes proteins
T102 681-684 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T103 681-684 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T104 694-698 http://purl.obolibrary.org/obo/PR_Q86XP6 denotes blot
T105 694-698 http://purl.obolibrary.org/obo/PR_Q29TV8 denotes blot
T106 694-698 http://purl.obolibrary.org/obo/PR_Q9CQS6 denotes blot
T107 694-698 http://purl.obolibrary.org/obo/PR_000008014 denotes blot
T108 722-729 http://www.uniprot.org/uniprot/Q7Y0Y8 denotes OsHDAC1
T109 722-729 HDAC1 denotes OsHDAC1
T110 730-731 AMT1;2 denotes 3
T111 749-752 http://www.uniprot.org/uniprot/Q804H7 denotes six
T112 754-757 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T113 754-757 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T114 785-788 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T115 785-788 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T116 803-810 http://purl.obolibrary.org/obo/SO_0000180 denotes class I
T117 830-834 http://id.nlm.nih.gov/mesh/D012275 denotes rice
T118 830-834 http://purl.bioontology.org/ontology/RXNORM/1311040 denotes rice
T119 830-834 http://www.ncbi.nlm.nih.gov/taxonomy/4530 denotes rice
T120 835-841 http://purl.obolibrary.org/obo/SO_0001026 denotes genome
T121 843-850 http://www.uniprot.org/uniprot/Q7Y0Y8 denotes OsHDAC1
T122 843-850 HDAC1 denotes OsHDAC1
T123 851-854 http://purl.obolibrary.org/obo/PR_000017371 denotes was
T124 851-854 http://purl.obolibrary.org/obo/PR_P42768 denotes was
T125 851-854 http://purl.obolibrary.org/obo/PR_P70315 denotes was
T126 851-854 http://id.nlm.nih.gov/mesh/D014923 denotes was
T127 905-908 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T128 905-908 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T129 931-938 HDAC2 denotes OsHDAC2
T130 931-938 http://www.uniprot.org/uniprot/Q6YV04 denotes OsHDAC2
T131 937-938 AMT1;3 denotes 2
T132 939-942 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T133 939-942 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T134 939-944 http://web.expasy.org/cellosaurus/CVCL_B528 denotes and 3
T135 943-944 AMT1;2 denotes 3
T136 973-976 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T137 973-976 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T138 995-998 http://purl.obolibrary.org/obo/PR_Q9VVR1 denotes not
T139 995-998 http://purl.obolibrary.org/obo/PR_000011409 denotes not
T140 995-998 http://purl.obolibrary.org/obo/PR_P43354 denotes not
T141 995-998 http://purl.obolibrary.org/obo/PR_000003944 denotes not
T142 995-998 http://purl.obolibrary.org/obo/PR_Q5TIS6 denotes not
T143 995-998 http://purl.obolibrary.org/obo/PR_Q92685 denotes not
T144 995-998 http://purl.obolibrary.org/obo/PR_Q8K2A8 denotes not
T145 995-998 http://purl.obolibrary.org/obo/PR_000011336 denotes not
T146 1034-1040 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissue
T147 1069-1073 http://purl.obolibrary.org/obo/UBERON_2002175 denotes role
T148 1069-1073 http://purl.obolibrary.org/obo/CHEBI_50906 denotes role
T149 1077-1084 http://id.nlm.nih.gov/mesh/D006657 denotes histone
T150 1077-1084 http://purl.obolibrary.org/obo/CHEBI_15358 denotes histone
T151 1077-1084 http://purl.obolibrary.org/obo/PR_000041244 denotes histone
T152 1077-1097 http://id.nlm.nih.gov/mesh/D006655 denotes histone deacetylases
T153 1101-1111 http://purl.obolibrary.org/obo/SO_0000781 denotes transgenic
T154 1101-1118 http://id.nlm.nih.gov/mesh/D030821 denotes transgenic plants
T155 1112-1118 http://id.nlm.nih.gov/mesh/D010944 denotes plants
T156 1136-1143 http://www.uniprot.org/uniprot/Q7Y0Y8 denotes OsHDAC1
T157 1136-1143 HDAC1 denotes OsHDAC1
T158 1144-1148 http://id.nlm.nih.gov/mesh/D018076 denotes cDNA
T159 1144-1148 http://purl.obolibrary.org/obo/SO_0000756 denotes cDNA
T160 1149-1157 http://purl.obolibrary.org/obo/SO_0000731 denotes fragment
T161 1167-1184 http://www.ncbi.nlm.nih.gov/taxonomy/81076 denotes expression vector
T162 1178-1184 http://purl.obolibrary.org/obo/SO_0000440 denotes vector
T163 1189-1196 http://www.uniprot.org/uniprot/Q7Y0Y8 denotes OsHDAC1
T164 1189-1196 HDAC1 denotes OsHDAC1
T165 1222-1225 http://purl.obolibrary.org/obo/CHEBI_28937 denotes ABA
T166 1222-1225 ASR1 denotes ABA
T167 1222-1225 http://purl.obolibrary.org/obo/CHEBI_2365 denotes ABA
T168 1222-1225 ASR4 denotes ABA
T169 1222-1225 ASR5 denotes ABA
T170 1222-1225 ASR2 denotes ABA
T171 1222-1225 http://www.uniprot.org/uniprot/Q00022 denotes ABA
T172 1222-1225 http://purl.obolibrary.org/obo/CHEBI_53554 denotes ABA
T173 1222-1225 ASR3 denotes ABA
T174 1226-1244 http://purl.obolibrary.org/obo/SO_0002051 denotes inducible promoter
T175 1236-1244 http://purl.obolibrary.org/obo/SO_0000167 denotes promoter
T176 1249-1252 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T177 1249-1252 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T178 1269-1278 http://purl.obolibrary.org/obo/SO_0000804 denotes construct
T179 1284-1288 http://id.nlm.nih.gov/mesh/D012275 denotes rice
T180 1284-1288 http://purl.bioontology.org/ontology/RXNORM/1311040 denotes rice
T181 1284-1288 http://www.ncbi.nlm.nih.gov/taxonomy/4530 denotes rice
T182 1300-1304 http://id.nlm.nih.gov/mesh/D012333 denotes mRNA
T183 1300-1304 http://purl.obolibrary.org/obo/SO_0000234 denotes mRNA
T184 1300-1304 http://purl.obolibrary.org/obo/CHEBI_33699 denotes mRNA
T185 1306-1313 http://purl.obolibrary.org/obo/CHEBI_11122 denotes protein
T186 1306-1313 http://purl.obolibrary.org/obo/SO_0000104 denotes protein
T187 1306-1313 http://purl.obolibrary.org/obo/PR_000000001 denotes protein
T188 1306-1313 http://purl.obolibrary.org/obo/CHEBI_16541 denotes protein
T189 1306-1313 http://purl.obolibrary.org/obo/GO_0003675 denotes protein
T190 1306-1313 http://purl.obolibrary.org/obo/CHEBI_36080 denotes protein
T191 1315-1318 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T192 1315-1318 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T193 1319-1323 http://purl.obolibrary.org/obo/PR_Q54VQ7 denotes HDAC
T194 1369-1376 http://www.uniprot.org/uniprot/Q7Y0Y8 denotes OsHDAC1
T195 1369-1376 HDAC1 denotes OsHDAC1
T196 1405-1410 http://www.ncbi.nlm.nih.gov/taxonomy/42554 denotes tetra
T197 1405-1410 http://id.nlm.nih.gov/mesh/D060126 denotes tetra
T198 1405-1410 http://purl.obolibrary.org/obo/CHEBI_27385 denotes tetra
T199 1432-1442 http://purl.obolibrary.org/obo/SO_0000781 denotes transgenic
T200 1449-1452 http://purl.obolibrary.org/obo/PR_000017371 denotes was
T201 1449-1452 http://purl.obolibrary.org/obo/PR_P42768 denotes was
T202 1449-1452 http://purl.obolibrary.org/obo/PR_P70315 denotes was
T203 1449-1452 http://id.nlm.nih.gov/mesh/D014923 denotes was
T204 1470-1473 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T205 1470-1473 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T206 1478-1487 http://purl.obolibrary.org/obo/MOP_0000569 denotes reduction
T207 1488-1491 http://purl.obolibrary.org/obo/PR_000017371 denotes was
T208 1488-1491 http://purl.obolibrary.org/obo/PR_P42768 denotes was
T209 1488-1491 http://purl.obolibrary.org/obo/PR_P70315 denotes was
T210 1488-1491 http://id.nlm.nih.gov/mesh/D014923 denotes was
T211 1522-1534 http://purl.obolibrary.org/obo/CHEBI_39146 denotes trichostatin
T212 1522-1536 http://purl.obolibrary.org/obo/CHEBI_46024 denotes trichostatin A
T213 1522-1536 http://id.nlm.nih.gov/mesh/C012589 denotes trichostatin A
T214 1522-1536 http://id.nlm.nih.gov/mesh/C012589 denotes trichostatin A
T215 1569-1576 http://www.uniprot.org/uniprot/Q7Y0Y8 denotes OsHDAC1
T216 1569-1576 HDAC1 denotes OsHDAC1
T217 1595-1605 http://purl.obolibrary.org/obo/SO_0000781 denotes transgenic
T218 1645-1649 http://purl.obolibrary.org/obo/PR_Q54VQ7 denotes HDAC
T219 1660-1663 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T220 1660-1663 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T221 1683-1690 http://id.nlm.nih.gov/mesh/D006657 denotes histone
T222 1683-1690 http://purl.obolibrary.org/obo/CHEBI_15358 denotes histone
T223 1683-1690 http://purl.obolibrary.org/obo/PR_000041244 denotes histone
T224 1683-1702 http://purl.obolibrary.org/obo/SO_0001702 denotes histone acetylation
T225 1683-1702 http://purl.obolibrary.org/obo/GO_0016573 denotes histone acetylation
T226 1691-1702 http://purl.obolibrary.org/obo/MOP_0000030 denotes acetylation
T227 1737-1741 http://www.uniprot.org/uniprot/A7MBU6 denotes to a
T228 1789-1795 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T229 1801-1804 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T230 1801-1804 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T231 1813-1818 http://id.nlm.nih.gov/mesh/D010944 denotes plant
T232 1849-1856 http://www.uniprot.org/uniprot/Q7Y0Y8 denotes OsHDAC1
T233 1849-1856 HDAC1 denotes OsHDAC1
T234 1874-1880 http://purl.obolibrary.org/obo/SO_0001026 denotes genome
T235 1901-1905 http://purl.obolibrary.org/obo/SO_0000704 denotes gene
T236 1901-1916 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression

pqqtest_sentence

Id Subject Object Predicate Lexical cue
M_0 1624-1659 cand:TO:0000324-rubisco to soluble protein ratio denotes enzymatically active HDAC complexes
M_1 1624-1659 cand:funRiceGene:129-protein kinase denotes enzymatically active HDAC complexes
M_2 1624-1659 cand:funRiceGene:171-histone trimethylation denotes enzymatically active HDAC complexes
M_3 1624-1659 cand:funRiceGene:338-N-glycan formation denotes enzymatically active HDAC complexes
M_4 1624-1659 cand:TO:0000610-soluble to total protein ratio denotes enzymatically active HDAC complexes
M_5 1624-1659 cand:funRiceGene:228-transcriptional activator denotes enzymatically active HDAC complexes
M_6 1624-1659 cand:PO:0025190-leaf abaxial stomatal complex denotes enzymatically active HDAC complexes
M_7 1624-1659 cand:PO:0025221-tepal stomatal complex denotes enzymatically active HDAC complexes
M_8 1624-1659 cand:PO:0025189-petiole stomatal complex denotes enzymatically active HDAC complexes
M_9 1624-1659 cand:PO:0025191-leaf adaxial stomatal complex denotes enzymatically active HDAC complexes
M_10 1624-1659 cand:PO:0025185-leaf lamina stomatal complex denotes enzymatically active HDAC complexes
M_11 610-620 cand:TO:0020007-sorghum shoot fly resistance denotes maize RPD3
M_12 610-620 cand:TO:0020008-sorghum grain mold denotes maize RPD3
M_13 610-620 cand:TO:0020005-sorghum stem borer resistance denotes maize RPD3
M_14 610-620 cand:TO:0020015-sorghum leaf blight resistance denotes maize RPD3
M_15 610-620 cand:TO:0000138-brown rice protein denotes maize RPD3
M_16 610-620 cand:TO:0020006-chickpea pod borer denotes maize RPD3
M_17 610-620 cand:PO:0030078-rhizoid denotes maize RPD3
M_18 610-620 cand:TO:0000638-spike width denotes maize RPD3
M_19 610-620 cand:PO:0009087-mesocarp denotes maize RPD3
M_20 610-620 cand:PO:0009030-carpel denotes maize RPD3
M_21 610-620 cand:PO:0004516-late wood denotes maize RPD3
M_22 1779-1800 cand:funRiceGene:155-growth rate denotes increased growth rate
M_23 1779-1800 cand:TO:0000515-relative growth rate denotes increased growth rate
M_24 1779-1800 cand:PPO:0007001-initial growth cycle denotes increased growth rate
M_25 1779-1800 cand:PO:0007004-rapid growth stage denotes increased growth rate
M_26 1779-1800 cand:PPO:0007002-later growth cycle denotes increased growth rate
M_27 1779-1800 cand:PECO:0007165-growth hormone exposure denotes increased growth rate
M_28 1779-1800 cand:PO:0007113-rosette growth stage denotes increased growth rate
M_29 1779-1800 cand:PO:0007004-3 rapid growth stage denotes increased growth rate
M_30 1422-1424 GeneID:RAPID:Os10g0539500|Os07g0549900|Os09g0553100MSUID:LOC_Os07g36500|LOC_Os10g39410|LOC_Os09g38020 denotes H4
M_31 459-466 GeneID:RAPID:Os06g0583400MSUID:LOC_Os06g38470 denotes OsHDAC1
M_32 1849-1856 GeneID:RAPID:Os06g0583400MSUID:LOC_Os06g38470 denotes OsHDAC1
T15724 1813-1831 funRiceGene:494, xzyao:14955 denotes plant architecture
T36616 174-186 funRiceGene:351 denotes architecture
T90083 1819-1831 funRiceGene:351 denotes architecture
T86150 150-156 WTO:0000021, funRiceGene:221 denotes growth
T40763 1789-1795 WTO:0000021, funRiceGene:221 denotes growth
T4972 1222-1225 funRiceGene:140 denotes ABA
T39192 1203-1214 xzyao:15868 denotes the control
T57072 150-161 funRiceGene:106, xzyao:18538 denotes growth rate
T72809 1789-1800 funRiceGene:106, xzyao:18538 denotes growth rate
T8172 1683-1702 xzyao:39777 denotes histone acetylation
T29791 1805-1831 xzyao:15860 denotes altered plant architecture
T84684 1624-1659 xzyao:38795 denotes enzymatically active HDAC complexes
T19607 140-161 xzyao:43600 denotes increased growth rate
T51129 1779-1800 xzyao:43600 denotes increased growth rate
T18104 909-915 funRiceGene:113 denotes callus
T4135 977-983 funRiceGene:113 denotes callus
T9257 1377-1383 funRiceGene:113 denotes callus
T99713 554-564 xzyao:10364 denotes amino acid
T30314 909-921 xzyao:29541 denotes callus cells
T76163 977-989 xzyao:29541 denotes callus cells
T35249 1377-1389 xzyao:29541 denotes callus cells
T40984 626-631 hunflair:NA:Species denotes human
T75144 931-944 hunflair:NA:Gene denotes OsHDAC2 and 3
T25786 1422-1424 hunflair:NA:Gene denotes H4
T86767 188-208 hunflair:NA:Gene denotes Histone deacetylases
T47011 554-564 hunflair:NA:Chemical denotes amino acid
T45368 50-57 hunflair:NA:Chemical denotes histone
T68806 395-402 hunflair:NA:Chemical denotes histone
T42481 1077-1084 hunflair:NA:Chemical denotes histone
T47922 1683-1690 hunflair:NA:Chemical denotes histone
T6554 76-85 hunflair:NA:Gene denotes OsHDAC1-3
T74332 362-371 hunflair:NA:Gene denotes OsHDAC1-3
T46137 722-731 hunflair:NA:Gene denotes OsHDAC1-3
M_33 210-215 hunflair:NA:Gene denotes HDACs
M_34 265-270 hunflair:NA:Gene denotes HDACs
M_35 601-608 hunflair:NA:Gene denotes OsHDAC3
M_36 395-415 hunflair:NA:Gene denotes histone deacetylases
M_37 1077-1097 hunflair:NA:Gene denotes histone deacetylases
M_38 1222-1225 hunflair:NA:Chemical denotes ABA
M_39 592-599 hunflair:NA:Gene denotes OsHDAC2
M_40 931-938 hunflair:NA:Gene denotes OsHDAC2
M_41 382-415 hunflair:NA:Gene denotes class I-type histone deacetylases
M_42 442-446 hunflair:NA:Gene denotes RPD3
M_43 616-620 hunflair:NA:Gene denotes RPD3
M_44 610-615 hunflair:NA:Species denotes maize
M_45 442-453 hunflair:NA:Gene denotes RPD3 family
M_46 76-83 hunflair:NA:Gene denotes OsHDAC1
M_47 87-94 hunflair:NA:Gene denotes OsHDAC1
M_48 362-369 hunflair:NA:Gene denotes OsHDAC1
M_49 459-466 hunflair:NA:Gene denotes OsHDAC1
M_50 722-729 hunflair:NA:Gene denotes OsHDAC1
M_51 843-850 hunflair:NA:Gene denotes OsHDAC1
M_52 1136-1143 hunflair:NA:Gene denotes OsHDAC1
M_53 1189-1196 hunflair:NA:Gene denotes OsHDAC1
M_54 1369-1376 hunflair:NA:Gene denotes OsHDAC1
M_55 1569-1576 hunflair:NA:Gene denotes OsHDAC1
M_56 1849-1856 hunflair:NA:Gene denotes OsHDAC1
M_57 1319-1323 hunflair:NA:Gene denotes HDAC
M_58 1645-1649 hunflair:NA:Gene denotes HDAC
M_59 632-637 hunflair:NA:Gene denotes HDAC1
M_60 32-36 hunflair:NA:Species denotes rice
M_61 357-361 hunflair:NA:Species denotes rice
M_62 830-834 hunflair:NA:Species denotes rice
M_63 1284-1288 hunflair:NA:Species denotes rice
M_64 442-446 pubtator:541883:Gene denotes RPD3
M_65 616-620 pubtator:541883:Gene denotes RPD3
M_66 632-637 pubtator:3065:Gene denotes HDAC1
M_67 1405-1410 pubtator:42554:Species denotes tetra
M_68 1522-1536 pubtator:MESH:C012589:Chemical denotes trichostatin A
M_69 32-36 pubtator:4530:Species denotes rice
M_70 357-361 pubtator:4530:Species denotes rice
M_71 830-834 pubtator:4530:Species denotes rice
M_72 1284-1288 pubtator:4530:Species denotes rice
M_73 626-631 pubtator:9606:Species denotes human
M_74 610-615 pubtator:4577:Species denotes maize

21k_plant_trait_mention

Id Subject Object Predicate Lexical cue
M_0 1789-1800 funRiceGene:106, xzyao:5698 denotes growth rate
M_1 1789-1795 WTO:0000021, funRiceGene:221 denotes growth
M_2 662-680 xzyao:12117 denotes Genomic structures
M_3 909-915 funRiceGene:113 denotes callus
M_4 977-983 funRiceGene:113 denotes callus
M_5 1377-1383 funRiceGene:113 denotes callus
M_6 76-83 hunflair:NA:Gene denotes OsHDAC1
M_7 87-94 hunflair:NA:Gene denotes OsHDAC1
M_8 362-369 hunflair:NA:Gene denotes OsHDAC1
M_9 459-466 hunflair:NA:Gene denotes OsHDAC1
M_10 722-729 hunflair:NA:Gene denotes OsHDAC1
M_11 843-850 hunflair:NA:Gene denotes OsHDAC1
M_12 1136-1143 hunflair:NA:Gene denotes OsHDAC1
M_13 1189-1196 hunflair:NA:Gene denotes OsHDAC1
M_14 1369-1376 hunflair:NA:Gene denotes OsHDAC1
M_15 1569-1576 hunflair:NA:Gene denotes OsHDAC1
M_16 1849-1856 hunflair:NA:Gene denotes OsHDAC1
M_17 188-208 hunflair:NA:Gene denotes Histone deacetylases
M_18 592-599 hunflair:NA:Gene denotes OsHDAC2
M_19 931-938 hunflair:NA:Gene denotes OsHDAC2
M_20 76-85 hunflair:NA:Gene denotes OsHDAC1-3
M_21 362-371 hunflair:NA:Gene denotes OsHDAC1-3
M_22 722-731 hunflair:NA:Gene denotes OsHDAC1-3
M_23 442-453 hunflair:NA:Gene denotes RPD3 family
M_24 442-446 hunflair:NA:Gene denotes RPD3
M_25 616-620 hunflair:NA:Gene denotes RPD3
M_26 601-608 hunflair:NA:Gene denotes OsHDAC3
M_27 931-944 hunflair:NA:Gene denotes OsHDAC2 and 3
M_28 554-564 hunflair:NA:Chemical denotes amino acid
M_29 626-631 hunflair:NA:Species denotes human
M_30 632-637 hunflair:NA:Gene denotes HDAC1
M_31 1422-1424 hunflair:NA:Gene denotes H4
M_32 382-415 hunflair:NA:Gene denotes class I-type histone deacetylases
M_33 610-615 hunflair:NA:Species denotes maize
M_34 210-215 hunflair:NA:Gene denotes HDACs
M_35 265-270 hunflair:NA:Gene denotes HDACs
M_36 1222-1225 hunflair:NA:Chemical denotes ABA
M_37 32-36 hunflair:NA:Species denotes rice
M_38 357-361 hunflair:NA:Species denotes rice
M_39 830-834 hunflair:NA:Species denotes rice
M_40 1284-1288 hunflair:NA:Species denotes rice
M_41 50-57 hunflair:NA:Chemical denotes histone
M_42 395-402 hunflair:NA:Chemical denotes histone
M_43 1077-1084 hunflair:NA:Chemical denotes histone
M_44 1683-1690 hunflair:NA:Chemical denotes histone
M_45 1319-1323 hunflair:NA:Gene denotes HDAC
M_46 1645-1649 hunflair:NA:Gene denotes HDAC
M_47 395-415 hunflair:NA:Gene denotes histone deacetylases
M_48 1077-1097 hunflair:NA:Gene denotes histone deacetylases
M_49 1522-1536 pubtator:MESH:C012589:Chemical denotes trichostatin A
M_50 626-631 pubtator:9606:Species denotes human
M_51 442-446 pubtator:541883:Gene denotes RPD3
M_52 616-620 pubtator:541883:Gene denotes RPD3
M_53 632-637 pubtator:3065:Gene denotes HDAC1
M_54 32-36 pubtator:4530:Species denotes rice
M_55 357-361 pubtator:4530:Species denotes rice
M_56 830-834 pubtator:4530:Species denotes rice
M_57 1284-1288 pubtator:4530:Species denotes rice
M_58 1405-1410 pubtator:42554:Species denotes tetra
M_59 610-615 pubtator:4577:Species denotes maize

OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 76-83 http://identifiers.org/oryzabase.gene/3108 denotes OsHDAC1
T2 87-94 http://identifiers.org/oryzabase.gene/3108 denotes OsHDAC1
T3 362-369 http://identifiers.org/oryzabase.gene/3108 denotes OsHDAC1
T4 459-466 http://identifiers.org/oryzabase.gene/3108 denotes OsHDAC1
T5 592-599 http://identifiers.org/oryzabase.gene/3109 denotes OsHDAC2
T6 601-608 http://identifiers.org/oryzabase.gene/3110 denotes OsHDAC3
T7 632-637 http://identifiers.org/oryzabase.gene/3108 denotes HDAC1
T8 722-729 http://identifiers.org/oryzabase.gene/3108 denotes OsHDAC1
T9 843-850 http://identifiers.org/oryzabase.gene/3108 denotes OsHDAC1
T10 931-938 http://identifiers.org/oryzabase.gene/3109 denotes OsHDAC2
T11 1136-1143 http://identifiers.org/oryzabase.gene/3108 denotes OsHDAC1
T12 1189-1196 http://identifiers.org/oryzabase.gene/3108 denotes OsHDAC1
T13 1222-1225 http://identifiers.org/oryzabase.gene/6003 denotes ABA
T14 1369-1376 http://identifiers.org/oryzabase.gene/3108 denotes OsHDAC1
T15 1422-1424 http://identifiers.org/oryzabase.gene/23746 denotes H4
T16 1422-1424 http://identifiers.org/oryzabase.gene/22420 denotes H4
T17 1422-1424 http://identifiers.org/oryzabase.gene/15721 denotes H4
T18 1422-1424 http://identifiers.org/oryzabase.gene/15718 denotes H4
T19 1569-1576 http://identifiers.org/oryzabase.gene/3108 denotes OsHDAC1
T20 1849-1856 http://identifiers.org/oryzabase.gene/3108 denotes OsHDAC1
T35207 76-83 http://identifiers.org/ricegap/LOC_Os06g38470 denotes OsHDAC1
T12243 87-94 http://identifiers.org/ricegap/LOC_Os06g38470 denotes OsHDAC1
T32861 362-369 http://identifiers.org/ricegap/LOC_Os06g38470 denotes OsHDAC1
T56792 459-466 http://identifiers.org/ricegap/LOC_Os06g38470 denotes OsHDAC1
T84953 592-599 http://identifiers.org/ricegap/LOC_Os02g12380 denotes OsHDAC2
T32492 601-608 http://identifiers.org/ricegap/LOC_Os02g12350 denotes OsHDAC3
T832 632-637 http://identifiers.org/ricegap/LOC_Os06g38470 denotes HDAC1
T41198 722-729 http://identifiers.org/ricegap/LOC_Os06g38470 denotes OsHDAC1
T75248 843-850 http://identifiers.org/ricegap/LOC_Os06g38470 denotes OsHDAC1
T46139 931-938 http://identifiers.org/ricegap/LOC_Os02g12380 denotes OsHDAC2
T21617 1136-1143 http://identifiers.org/ricegap/LOC_Os06g38470 denotes OsHDAC1
T70344 1189-1196 http://identifiers.org/ricegap/LOC_Os06g38470 denotes OsHDAC1
T35483 1222-1225 http://identifiers.org/ricegap/LOC_Os11g06720 denotes ABA
T50868 1222-1225 http://identifiers.org/ricegap/LOC_Os04g34600 denotes ABA
T75568 1222-1225 http://identifiers.org/ricegap/LOC_Os02g33820 denotes ABA
T7236 1222-1225 http://identifiers.org/ricegap/LOC_Os01g73250 denotes ABA
T96116 1222-1225 http://identifiers.org/ricegap/LOC_Os01g72910 denotes ABA
T28657 1222-1225 http://identifiers.org/ricegap/LOC_Os01g72900 denotes ABA
T39130 1369-1376 http://identifiers.org/ricegap/LOC_Os06g38470 denotes OsHDAC1
T20749 1422-1424 http://identifiers.org/ricegap/LOC_Os10g39410 denotes H4
T21 1422-1424 http://identifiers.org/ricegap/LOC_Os09g38020 denotes H4
T22 1422-1424 http://identifiers.org/ricegap/LOC_Os07g36500 denotes H4
T23 1569-1576 http://identifiers.org/ricegap/LOC_Os06g38470 denotes OsHDAC1
T24 1849-1856 http://identifiers.org/ricegap/LOC_Os06g38470 denotes OsHDAC1
T39151 76-83 http://identifiers.org/rapdb.locus/Os06g0583400 denotes OsHDAC1
T54139 87-94 http://identifiers.org/rapdb.locus/Os06g0583400 denotes OsHDAC1
T52866 362-369 http://identifiers.org/rapdb.locus/Os06g0583400 denotes OsHDAC1
T53250 459-466 http://identifiers.org/rapdb.locus/Os06g0583400 denotes OsHDAC1
T97879 592-599 http://identifiers.org/rapdb.locus/Os02g0215200 denotes OsHDAC2
T24862 601-608 http://identifiers.org/rapdb.locus/Os02g0214900 denotes OsHDAC3
T26917 632-637 http://identifiers.org/rapdb.locus/Os06g0583400 denotes HDAC1
T55007 722-729 http://identifiers.org/rapdb.locus/Os06g0583400 denotes OsHDAC1
T77877 843-850 http://identifiers.org/rapdb.locus/Os06g0583400 denotes OsHDAC1
T72510 931-938 http://identifiers.org/rapdb.locus/Os02g0215200 denotes OsHDAC2
T49028 1136-1143 http://identifiers.org/rapdb.locus/Os06g0583400 denotes OsHDAC1
T12807 1189-1196 http://identifiers.org/rapdb.locus/Os06g0583400 denotes OsHDAC1
T19973 1222-1225 http://identifiers.org/rapdb.locus/Os11g0167800 denotes ABA
T54053 1222-1225 http://identifiers.org/rapdb.locus/Os04g0423400 denotes ABA
T47928 1222-1225 http://identifiers.org/rapdb.locus/Os02g0543000 denotes ABA
T87992 1222-1225 http://identifiers.org/rapdb.locus/Os01g0963600 denotes ABA
T88237 1222-1225 http://identifiers.org/rapdb.locus/Os01g0959200 denotes ABA
T88310 1222-1225 http://identifiers.org/rapdb.locus/Os01g0959100 denotes ABA
T55811 1369-1376 http://identifiers.org/rapdb.locus/Os06g0583400 denotes OsHDAC1
T21237 1422-1424 http://identifiers.org/rapdb.locus/Os10g0539500 denotes H4
T61770 1422-1424 http://identifiers.org/rapdb.locus/Os09g0553100 denotes H4
T87825 1422-1424 http://identifiers.org/rapdb.locus/Os07g0549900 denotes H4
T55344 1569-1576 http://identifiers.org/rapdb.locus/Os06g0583400 denotes OsHDAC1
T45142 1849-1856 http://identifiers.org/rapdb.locus/Os06g0583400 denotes OsHDAC1
T19150 76-83 http://identifiers.org/uniprot/Q7Y0Y8 denotes OsHDAC1
T83830 76-83 http://identifiers.org/uniprot/B9FTW9 denotes OsHDAC1
T41252 87-94 http://identifiers.org/uniprot/Q7Y0Y8 denotes OsHDAC1
T23100 87-94 http://identifiers.org/uniprot/B9FTW9 denotes OsHDAC1
T38121 362-369 http://identifiers.org/uniprot/Q7Y0Y8 denotes OsHDAC1
T33094 362-369 http://identifiers.org/uniprot/B9FTW9 denotes OsHDAC1
T20790 459-466 http://identifiers.org/uniprot/Q7Y0Y8 denotes OsHDAC1
T94795 459-466 http://identifiers.org/uniprot/B9FTW9 denotes OsHDAC1
T82957 592-599 http://identifiers.org/uniprot/Q7Y0Y7 denotes OsHDAC2
T94488 592-599 http://identifiers.org/uniprot/B9F497 denotes OsHDAC2
T51884 601-608 http://identifiers.org/uniprot/Q7Y0Y6 denotes OsHDAC3
T79667 601-608 http://identifiers.org/uniprot/B8AE72 denotes OsHDAC3
T2433 632-637 http://identifiers.org/uniprot/Q7Y0Y8 denotes HDAC1
T83478 632-637 http://identifiers.org/uniprot/B9FTW9 denotes HDAC1
T87068 722-729 http://identifiers.org/uniprot/Q7Y0Y8 denotes OsHDAC1
T95551 722-729 http://identifiers.org/uniprot/B9FTW9 denotes OsHDAC1
T66150 843-850 http://identifiers.org/uniprot/Q7Y0Y8 denotes OsHDAC1
T53834 843-850 http://identifiers.org/uniprot/B9FTW9 denotes OsHDAC1
T79135 931-938 http://identifiers.org/uniprot/Q7Y0Y7 denotes OsHDAC2
T25052 931-938 http://identifiers.org/uniprot/B9F497 denotes OsHDAC2
T39280 1136-1143 http://identifiers.org/uniprot/Q7Y0Y8 denotes OsHDAC1
T94587 1136-1143 http://identifiers.org/uniprot/B9FTW9 denotes OsHDAC1
T43295 1189-1196 http://identifiers.org/uniprot/Q7Y0Y8 denotes OsHDAC1
T97121 1189-1196 http://identifiers.org/uniprot/B9FTW9 denotes OsHDAC1
T25 1369-1376 http://identifiers.org/uniprot/Q7Y0Y8 denotes OsHDAC1
T26 1369-1376 http://identifiers.org/uniprot/B9FTW9 denotes OsHDAC1
T27 1422-1424 http://identifiers.org/uniprot/B6T0P4 denotes H4
T28 1422-1424 http://identifiers.org/refseq/XP_002310853.1 denotes H4
T29 1569-1576 http://identifiers.org/uniprot/Q7Y0Y8 denotes OsHDAC1
T30 1569-1576 http://identifiers.org/uniprot/B9FTW9 denotes OsHDAC1
T31 1849-1856 http://identifiers.org/uniprot/Q7Y0Y8 denotes OsHDAC1
T32 1849-1856 http://identifiers.org/uniprot/B9FTW9 denotes OsHDAC1

OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 76-83 http://identifiers.org/oryzabase.gene/3108 denotes OsHDAC1
T2 87-94 http://identifiers.org/oryzabase.gene/3108 denotes OsHDAC1
T3 362-369 http://identifiers.org/oryzabase.gene/3108 denotes OsHDAC1
T4 459-466 http://identifiers.org/oryzabase.gene/3108 denotes OsHDAC1
T5 592-599 http://identifiers.org/oryzabase.gene/3109 denotes OsHDAC2
T6 601-608 http://identifiers.org/oryzabase.gene/3110 denotes OsHDAC3
T7 632-637 http://identifiers.org/oryzabase.gene/3108 denotes HDAC1
T8 722-729 http://identifiers.org/oryzabase.gene/3108 denotes OsHDAC1
T9 843-850 http://identifiers.org/oryzabase.gene/3108 denotes OsHDAC1
T10 931-938 http://identifiers.org/oryzabase.gene/3109 denotes OsHDAC2
T11 1136-1143 http://identifiers.org/oryzabase.gene/3108 denotes OsHDAC1
T12 1189-1196 http://identifiers.org/oryzabase.gene/3108 denotes OsHDAC1
T13 1222-1225 http://identifiers.org/oryzabase.gene/6003 denotes ABA
T14 1369-1376 http://identifiers.org/oryzabase.gene/3108 denotes OsHDAC1
T15 1422-1424 http://identifiers.org/oryzabase.gene/23746 denotes H4
T16 1422-1424 http://identifiers.org/oryzabase.gene/22420 denotes H4
T17 1422-1424 http://identifiers.org/oryzabase.gene/15721 denotes H4
T18 1422-1424 http://identifiers.org/oryzabase.gene/15718 denotes H4
T19 1569-1576 http://identifiers.org/oryzabase.gene/3108 denotes OsHDAC1
T20 1849-1856 http://identifiers.org/oryzabase.gene/3108 denotes OsHDAC1
T9769 76-83 http://identifiers.org/rapdb.locus/Os06g0583400 denotes OsHDAC1
T47559 87-94 http://identifiers.org/rapdb.locus/Os06g0583400 denotes OsHDAC1
T81755 362-369 http://identifiers.org/rapdb.locus/Os06g0583400 denotes OsHDAC1
T67317 459-466 http://identifiers.org/rapdb.locus/Os06g0583400 denotes OsHDAC1
T65504 592-599 http://identifiers.org/rapdb.locus/Os02g0215200 denotes OsHDAC2
T46961 601-608 http://identifiers.org/rapdb.locus/Os02g0214900 denotes OsHDAC3
T46329 632-637 http://identifiers.org/rapdb.locus/Os06g0583400 denotes HDAC1
T78784 722-729 http://identifiers.org/rapdb.locus/Os06g0583400 denotes OsHDAC1
T96564 843-850 http://identifiers.org/rapdb.locus/Os06g0583400 denotes OsHDAC1
T6300 931-938 http://identifiers.org/rapdb.locus/Os02g0215200 denotes OsHDAC2
T91100 1136-1143 http://identifiers.org/rapdb.locus/Os06g0583400 denotes OsHDAC1
T62277 1189-1196 http://identifiers.org/rapdb.locus/Os06g0583400 denotes OsHDAC1
T60639 1369-1376 http://identifiers.org/rapdb.locus/Os06g0583400 denotes OsHDAC1
T82923 1422-1424 http://identifiers.org/rapdb.locus/Os10g0539500 denotes H4
T15307 1422-1424 http://identifiers.org/rapdb.locus/Os09g0553100 denotes H4
T81549 1422-1424 http://identifiers.org/rapdb.locus/Os07g0549900 denotes H4
T79738 1569-1576 http://identifiers.org/rapdb.locus/Os06g0583400 denotes OsHDAC1
T28223 1849-1856 http://identifiers.org/rapdb.locus/Os06g0583400 denotes OsHDAC1

OryzaGP

Id Subject Object Predicate Lexical cue
T1 459-466 gene denotes OsHDAC1
T2 592-599 gene denotes OsHDAC2
T3 601-608 gene denotes OsHDAC3
T4 1136-1143 gene denotes OsHDAC1
T5 1569-1576 gene denotes OsHDAC1
T6 1849-1856 gene denotes OsHDAC1