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PubMed:12511560 JSONTXT

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GGDB-2020

Id Subject Object Predicate Lexical cue
T1 83-96 https://acgg.asia/db/ggdb/info/gg081 denotes Beta 4GalT-IV
T2 177-184 https://acgg.asia/db/ggdb/info/gg004 denotes Lewis X
T3 177-184 https://acgg.asia/db/ggdb/info/gg005 denotes Lewis X
T4 177-184 https://acgg.asia/db/ggdb/info/gg006 denotes Lewis X
T5 177-184 https://acgg.asia/db/ggdb/info/gg007 denotes Lewis X
T6 177-184 https://acgg.asia/db/ggdb/info/gg008 denotes Lewis X
T7 177-184 https://acgg.asia/db/ggdb/info/gg003 denotes Lewis X
T8 326-333 https://acgg.asia/db/ggdb/info/gg004 denotes Lewis X
T9 326-333 https://acgg.asia/db/ggdb/info/gg005 denotes Lewis X
T10 326-333 https://acgg.asia/db/ggdb/info/gg006 denotes Lewis X
T11 326-333 https://acgg.asia/db/ggdb/info/gg007 denotes Lewis X
T12 326-333 https://acgg.asia/db/ggdb/info/gg008 denotes Lewis X
T13 326-333 https://acgg.asia/db/ggdb/info/gg003 denotes Lewis X
T14 949-961 https://acgg.asia/db/ggdb/info/gg081 denotes beta4GalT-IV
T15 1274-1286 https://acgg.asia/db/ggdb/info/gg081 denotes beta4GalT-IV
T16 1454-1461 https://acgg.asia/db/ggdb/info/gg004 denotes Lewis X
T17 1454-1461 https://acgg.asia/db/ggdb/info/gg005 denotes Lewis X
T18 1454-1461 https://acgg.asia/db/ggdb/info/gg006 denotes Lewis X
T19 1454-1461 https://acgg.asia/db/ggdb/info/gg007 denotes Lewis X
T20 1454-1461 https://acgg.asia/db/ggdb/info/gg008 denotes Lewis X
T21 1454-1461 https://acgg.asia/db/ggdb/info/gg003 denotes Lewis X
T22 1492-1504 https://acgg.asia/db/ggdb/info/gg081 denotes beta4GalT-IV

ggdb-test

Id Subject Object Predicate Lexical cue
T1 83-96 https://acgg.asia/db/ggdb/info/gg081 denotes Beta 4GalT-IV
T2 177-184 https://acgg.asia/db/ggdb/info/gg003 denotes Lewis X
T3 177-184 https://acgg.asia/db/ggdb/info/gg004 denotes Lewis X
T4 177-184 https://acgg.asia/db/ggdb/info/gg005 denotes Lewis X
T5 177-184 https://acgg.asia/db/ggdb/info/gg006 denotes Lewis X
T6 177-184 https://acgg.asia/db/ggdb/info/gg007 denotes Lewis X
T7 177-184 https://acgg.asia/db/ggdb/info/gg008 denotes Lewis X
T8 326-333 https://acgg.asia/db/ggdb/info/gg003 denotes Lewis X
T9 326-333 https://acgg.asia/db/ggdb/info/gg004 denotes Lewis X
T10 326-333 https://acgg.asia/db/ggdb/info/gg005 denotes Lewis X
T11 326-333 https://acgg.asia/db/ggdb/info/gg006 denotes Lewis X
T12 326-333 https://acgg.asia/db/ggdb/info/gg007 denotes Lewis X
T13 326-333 https://acgg.asia/db/ggdb/info/gg008 denotes Lewis X
T14 949-961 https://acgg.asia/db/ggdb/info/gg081 denotes beta4GalT-IV
T15 1274-1286 https://acgg.asia/db/ggdb/info/gg081 denotes beta4GalT-IV
T16 1454-1461 https://acgg.asia/db/ggdb/info/gg003 denotes Lewis X
T17 1454-1461 https://acgg.asia/db/ggdb/info/gg004 denotes Lewis X
T18 1454-1461 https://acgg.asia/db/ggdb/info/gg005 denotes Lewis X
T19 1454-1461 https://acgg.asia/db/ggdb/info/gg006 denotes Lewis X
T20 1454-1461 https://acgg.asia/db/ggdb/info/gg007 denotes Lewis X
T21 1454-1461 https://acgg.asia/db/ggdb/info/gg008 denotes Lewis X
T22 1492-1504 https://acgg.asia/db/ggdb/info/gg081 denotes beta4GalT-IV

GlyCosmos6-Glycan-Motif-Image

Id Subject Object Predicate Lexical cue image
T1 105-120 Glycan_Motif denotes keratan sulfate https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G82109MW
T2 163-184 Glycan_Motif denotes 6-sulfosialyl-Lewis X https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G80722US
T3 292-307 Glycan_Motif denotes keratan sulfate https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G82109MW
T4 312-333 Glycan_Motif denotes 6-sulfosialyl-Lewis X https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G80722US
T5 1316-1331 Glycan_Motif denotes keratan sulfate https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G82109MW
T6 1440-1461 Glycan_Motif denotes 6-sulfosialyl-Lewis X https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G80722US
T7 1623-1642 Glycan_Motif denotes N-acetyllactosamine https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00055MO

sentences

Id Subject Object Predicate Lexical cue
T1 0-82 Sentence denotes Beta 1,4-galactosyltransferase (beta 4GalT)-IV is specific for GlcNAc 6-O-sulfate.
T2 83-185 Sentence denotes Beta 4GalT-IV acts on keratan sulfate-related glycans and a precursor glycan of 6-sulfosialyl-Lewis X.
T3 186-356 Sentence denotes The Galbeta1-->4(SO(3)(-)-->6)GlcNAc moiety is present in various N-linked and O-linked glycans including keratan sulfate and 6-sulfosialyl-Lewis X, an L-selectin ligand.
T4 357-621 Sentence denotes We previously found beta1,4-galactosyltransferase (beta4GalT) activity in human colonic mucosa, which prefers GlcNAc 6-O-sulfate (6SGN) as an acceptor to non-substituted GlcNAc (Seko, A., Hara-Kuge, S., Nagata, K., Yonezawa, S., and Yamashita, K. (1998) FEBS Lett.
T5 622-636 Sentence denotes 440, 307-310).
T6 637-726 Sentence denotes To identify the gene for this enzyme, we purified the enzyme from porcine colonic mucosa.
T7 727-821 Sentence denotes The purified enzyme had the characteristic requirement of basic lipids for catalytic activity.
T8 822-962 Sentence denotes Analysis of the partial amino acid sequence of the enzyme revealed that the purified beta4GalT has a similar sequence to human beta4GalT-IV.
T9 963-1165 Sentence denotes To confirm this result, we prepared cDNA for each of the seven beta4GalTs cloned to date and examined substrate specificities using the membrane fractions derived from beta4GalT-transfected COS-7 cells.
T10 1166-1462 Sentence denotes When using several N-linked and O-linked glycans with or without 6SGN residues as acceptor substrates, only beta4GalT-IV efficiently recognized 6SGN, keratan sulfate-related oligosaccharides, and Galbeta1-->3(SO(3)(-)-->6GlcNAcbeta1-->6) GalNAcalpha1-O-pNP, a precursor for 6-sulfosialyl-Lewis X.
T11 1463-1650 Sentence denotes These results suggested that beta4GalT-IV is a 6SGN-specific beta4GalT and may be involved in the biosynthesis of various glycoproteins carrying a 6-O-sulfated N-acetyllactosamine moiety.

GlyCosmos6-Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T1 105-120 https://glytoucan.org/Structures/Glycans/G82109MW denotes keratan sulfate
T2 163-184 https://glytoucan.org/Structures/Glycans/G80722US denotes 6-sulfosialyl-Lewis X
T3 177-184 https://glytoucan.org/Structures/Glycans/G00051MO denotes Lewis X
T4 292-307 https://glytoucan.org/Structures/Glycans/G82109MW denotes keratan sulfate
T5 312-333 https://glytoucan.org/Structures/Glycans/G80722US denotes 6-sulfosialyl-Lewis X
T6 326-333 https://glytoucan.org/Structures/Glycans/G00051MO denotes Lewis X
T7 1316-1331 https://glytoucan.org/Structures/Glycans/G82109MW denotes keratan sulfate
T8 1440-1461 https://glytoucan.org/Structures/Glycans/G80722US denotes 6-sulfosialyl-Lewis X
T9 1454-1461 https://glytoucan.org/Structures/Glycans/G00051MO denotes Lewis X
T10 1623-1642 https://glytoucan.org/Structures/Glycans/G00055MO denotes N-acetyllactosamine

Glycosmos6-MAT

Id Subject Object Predicate Lexical cue
T1 437-444 http://purl.obolibrary.org/obo/MAT_0000526 denotes colonic
T2 711-718 http://purl.obolibrary.org/obo/MAT_0000526 denotes colonic

Glycosmos6-GlycoEpitope

Id Subject Object Predicate Lexical cue
T1 105-120 http://www.glycoepitope.jp/epitopes/EP0085 denotes keratan sulfate
T2 177-184 http://www.glycoepitope.jp/epitopes/EP0011 denotes Lewis X
T3 292-307 http://www.glycoepitope.jp/epitopes/EP0085 denotes keratan sulfate
T4 326-333 http://www.glycoepitope.jp/epitopes/EP0011 denotes Lewis X
T5 1316-1331 http://www.glycoepitope.jp/epitopes/EP0085 denotes keratan sulfate
T6 1454-1461 http://www.glycoepitope.jp/epitopes/EP0011 denotes Lewis X

glycogenes

Id Subject Object Predicate Lexical cue
PD-GlycoGenes20190927-B_T1 83-96 https://acgg.asia/db/ggdb/info/gg081 denotes Beta 4GalT-IV
PD-GlycoGenes20190927-B_T2 917-920 https://acgg.asia/db/ggdb/info/gg135 denotes has
PD-GlycoGenes20190927-B_T3 949-961 https://acgg.asia/db/ggdb/info/gg081 denotes beta4GalT-IV
PD-GlycoGenes20190927-B_T4 1274-1286 https://acgg.asia/db/ggdb/info/gg081 denotes beta4GalT-IV
PD-GlycoGenes20190927-B_T5 1492-1504 https://acgg.asia/db/ggdb/info/gg081 denotes beta4GalT-IV

NGLY1-deficiency

Id Subject Object Predicate Lexical cue
PD-NGLY1-deficiency-B_T1 63-69 chem:24139 denotes GlcNAc
PD-NGLY1-deficiency-B_T2 216-222 chem:24139 denotes GlcNAc
PD-NGLY1-deficiency-B_T3 467-473 chem:24139 denotes GlcNAc
PD-NGLY1-deficiency-B_T4 527-533 chem:24139 denotes GlcNAc

Glycan-GlyCosmos

Id Subject Object Predicate Lexical cue image
T1 105-120 Glycan denotes keratan sulfate https://api.glycosmos.org/wurcs2image/latest/png/binary/G82109MW
T2 177-184 Glycan denotes Lewis X https://api.glycosmos.org/wurcs2image/latest/png/binary/G00051MO
T3 292-307 Glycan denotes keratan sulfate https://api.glycosmos.org/wurcs2image/latest/png/binary/G82109MW
T4 326-333 Glycan denotes Lewis X https://api.glycosmos.org/wurcs2image/latest/png/binary/G00051MO
T5 1316-1331 Glycan denotes keratan sulfate https://api.glycosmos.org/wurcs2image/latest/png/binary/G82109MW
T6 1454-1461 Glycan denotes Lewis X https://api.glycosmos.org/wurcs2image/latest/png/binary/G00051MO

GlyCosmos-GlycoEpitope

Id Subject Object Predicate Lexical cue glycoepitope_id
T1 105-120 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes keratan sulfate http://www.glycoepitope.jp/epitopes/EP0085
T2 177-184 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes Lewis X http://www.glycoepitope.jp/epitopes/EP0011
T3 292-307 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes keratan sulfate http://www.glycoepitope.jp/epitopes/EP0085
T4 326-333 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes Lewis X http://www.glycoepitope.jp/epitopes/EP0011
T5 1316-1331 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes keratan sulfate http://www.glycoepitope.jp/epitopes/EP0085
T6 1454-1461 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes Lewis X http://www.glycoepitope.jp/epitopes/EP0011

GlyCosmos15-NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 431-436 OrganismTaxon denotes human 9606
T2 545-549 OrganismTaxon denotes Hara 385297
T3 943-948 OrganismTaxon denotes human 9606

GlyCosmos15-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 437-451 Body_part denotes colonic mucosa http://purl.obolibrary.org/obo/UBERON_0000317
T2 711-725 Body_part denotes colonic mucosa http://purl.obolibrary.org/obo/UBERON_0000317
T3 1099-1107 Body_part denotes membrane http://purl.obolibrary.org/obo/GO_0016020|http://purl.obolibrary.org/obo/UBERON_0000094|http://purl.obolibrary.org/obo/UBERON_0000158

GlyCosmos15-MAT

Id Subject Object Predicate Lexical cue mat_id
T1 437-444 Body_part denotes colonic http://purl.obolibrary.org/obo/MAT_0000526
T2 711-718 Body_part denotes colonic http://purl.obolibrary.org/obo/MAT_0000526

sentences

Id Subject Object Predicate Lexical cue
T1 0-82 Sentence denotes Beta 1,4-galactosyltransferase (beta 4GalT)-IV is specific for GlcNAc 6-O-sulfate.
T2 83-185 Sentence denotes Beta 4GalT-IV acts on keratan sulfate-related glycans and a precursor glycan of 6-sulfosialyl-Lewis X.
T3 186-356 Sentence denotes The Galbeta1-->4(SO(3)(-)-->6)GlcNAc moiety is present in various N-linked and O-linked glycans including keratan sulfate and 6-sulfosialyl-Lewis X, an L-selectin ligand.
T4 357-621 Sentence denotes We previously found beta1,4-galactosyltransferase (beta4GalT) activity in human colonic mucosa, which prefers GlcNAc 6-O-sulfate (6SGN) as an acceptor to non-substituted GlcNAc (Seko, A., Hara-Kuge, S., Nagata, K., Yonezawa, S., and Yamashita, K. (1998) FEBS Lett.
T5 622-636 Sentence denotes 440, 307-310).
T6 637-726 Sentence denotes To identify the gene for this enzyme, we purified the enzyme from porcine colonic mucosa.
T7 727-821 Sentence denotes The purified enzyme had the characteristic requirement of basic lipids for catalytic activity.
T8 822-962 Sentence denotes Analysis of the partial amino acid sequence of the enzyme revealed that the purified beta4GalT has a similar sequence to human beta4GalT-IV.
T9 963-1165 Sentence denotes To confirm this result, we prepared cDNA for each of the seven beta4GalTs cloned to date and examined substrate specificities using the membrane fractions derived from beta4GalT-transfected COS-7 cells.
T10 1166-1462 Sentence denotes When using several N-linked and O-linked glycans with or without 6SGN residues as acceptor substrates, only beta4GalT-IV efficiently recognized 6SGN, keratan sulfate-related oligosaccharides, and Galbeta1-->3(SO(3)(-)-->6GlcNAcbeta1-->6) GalNAcalpha1-O-pNP, a precursor for 6-sulfosialyl-Lewis X.
T11 1463-1650 Sentence denotes These results suggested that beta4GalT-IV is a 6SGN-specific beta4GalT and may be involved in the biosynthesis of various glycoproteins carrying a 6-O-sulfated N-acetyllactosamine moiety.

GlyCosmos15-Sentences

Id Subject Object Predicate Lexical cue
T1 0-82 Sentence denotes Beta 1,4-galactosyltransferase (beta 4GalT)-IV is specific for GlcNAc 6-O-sulfate.
T2 83-185 Sentence denotes Beta 4GalT-IV acts on keratan sulfate-related glycans and a precursor glycan of 6-sulfosialyl-Lewis X.
T3 186-356 Sentence denotes The Galbeta1-->4(SO(3)(-)-->6)GlcNAc moiety is present in various N-linked and O-linked glycans including keratan sulfate and 6-sulfosialyl-Lewis X, an L-selectin ligand.
T4 357-636 Sentence denotes We previously found beta1,4-galactosyltransferase (beta4GalT) activity in human colonic mucosa, which prefers GlcNAc 6-O-sulfate (6SGN) as an acceptor to non-substituted GlcNAc (Seko, A., Hara-Kuge, S., Nagata, K., Yonezawa, S., and Yamashita, K. (1998) FEBS Lett. 440, 307-310).
T5 637-726 Sentence denotes To identify the gene for this enzyme, we purified the enzyme from porcine colonic mucosa.
T6 727-821 Sentence denotes The purified enzyme had the characteristic requirement of basic lipids for catalytic activity.
T7 822-962 Sentence denotes Analysis of the partial amino acid sequence of the enzyme revealed that the purified beta4GalT has a similar sequence to human beta4GalT-IV.
T8 963-1165 Sentence denotes To confirm this result, we prepared cDNA for each of the seven beta4GalTs cloned to date and examined substrate specificities using the membrane fractions derived from beta4GalT-transfected COS-7 cells.
T9 1166-1650 Sentence denotes When using several N-linked and O-linked glycans with or without 6SGN residues as acceptor substrates, only beta4GalT-IV efficiently recognized 6SGN, keratan sulfate-related oligosaccharides, and Galbeta1-->3(SO(3)(-)-->6GlcNAcbeta1-->6) GalNAcalpha1-O-pNP, a precursor for 6-sulfosialyl-Lewis X. These results suggested that beta4GalT-IV is a 6SGN-specific beta4GalT and may be involved in the biosynthesis of various glycoproteins carrying a 6-O-sulfated N-acetyllactosamine moiety.

GlyCosmos15-Glycan

Id Subject Object Predicate Lexical cue glycosmos_id image
T1 105-120 Glycan denotes keratan sulfate https://glycosmos.org/glycans/show/G82109MW https://api.glycosmos.org/wurcs2image/latest/png/binary/G82109MW
T2 177-184 Glycan denotes Lewis X https://glycosmos.org/glycans/show/G00051MO https://api.glycosmos.org/wurcs2image/latest/png/binary/G00051MO
T3 292-307 Glycan denotes keratan sulfate https://glycosmos.org/glycans/show/G82109MW https://api.glycosmos.org/wurcs2image/latest/png/binary/G82109MW
T4 326-333 Glycan denotes Lewis X https://glycosmos.org/glycans/show/G00051MO https://api.glycosmos.org/wurcs2image/latest/png/binary/G00051MO
T5 1316-1331 Glycan denotes keratan sulfate https://glycosmos.org/glycans/show/G82109MW https://api.glycosmos.org/wurcs2image/latest/png/binary/G82109MW
T6 1454-1461 Glycan denotes Lewis X https://glycosmos.org/glycans/show/G00051MO https://api.glycosmos.org/wurcs2image/latest/png/binary/G00051MO

GlyCosmos15-GlycoEpitope

Id Subject Object Predicate Lexical cue glycoepitope_id
T1 105-120 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes keratan sulfate http://www.glycoepitope.jp/epitopes/EP0085
T2 177-184 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes Lewis X http://www.glycoepitope.jp/epitopes/EP0011
T3 292-307 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes keratan sulfate http://www.glycoepitope.jp/epitopes/EP0085
T4 326-333 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes Lewis X http://www.glycoepitope.jp/epitopes/EP0011
T5 1316-1331 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes keratan sulfate http://www.glycoepitope.jp/epitopes/EP0085
T6 1454-1461 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes Lewis X http://www.glycoepitope.jp/epitopes/EP0011

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 431-436 OrganismTaxon denotes human 9606
T2 545-549 OrganismTaxon denotes Hara 385297
T3 943-948 OrganismTaxon denotes human 9606

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 437-451 Body_part denotes colonic mucosa http://purl.obolibrary.org/obo/UBERON_0000317
T2 711-725 Body_part denotes colonic mucosa http://purl.obolibrary.org/obo/UBERON_0000317
T3 1099-1107 Body_part denotes membrane http://purl.obolibrary.org/obo/GO_0016020|http://purl.obolibrary.org/obo/UBERON_0000094|http://purl.obolibrary.org/obo/UBERON_0000158

Anatomy-MAT

Id Subject Object Predicate Lexical cue mat_id
T1 437-444 Body_part denotes colonic http://purl.obolibrary.org/obo/MAT_0000526
T2 711-718 Body_part denotes colonic http://purl.obolibrary.org/obo/MAT_0000526