PubMed:12446672
Annnotations
ggdb-test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 62-73 | https://acgg.asia/db/ggdb/info/gg166 | denotes | CSGalNAcT-1 |
| T2 | 664-675 | https://acgg.asia/db/ggdb/info/gg166 | denotes | CSGalNAcT-1 |
| T3 | 1178-1189 | https://acgg.asia/db/ggdb/info/gg166 | denotes | CSGalNAcT-1 |
| T4 | 1211-1222 | https://acgg.asia/db/ggdb/info/gg166 | denotes | CSGalNAcT-1 |
| T5 | 1523-1534 | https://acgg.asia/db/ggdb/info/gg166 | denotes | CSGalNAcT-1 |
GlyCosmos6-Glycan-Motif-Image
| Id | Subject | Object | Predicate | Lexical cue | image |
|---|---|---|---|---|---|
| T1 | 150-161 | Glycan_Motif | denotes | chondroitin | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G43702JT |
| T2 | 609-620 | Glycan_Motif | denotes | chondroitin | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G43702JT |
| T3 | 829-840 | Glycan_Motif | denotes | chondroitin | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G43702JT |
| T4 | 873-884 | Glycan_Motif | denotes | chondroitin | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G43702JT |
| T5 | 974-985 | Glycan_Motif | denotes | chondroitin | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G43702JT |
| T6 | 990-1001 | Glycan_Motif | denotes | chondroitin | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G43702JT |
| T7 | 1414-1425 | Glycan_Motif | denotes | chondroitin | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G43702JT |
| T8 | 1568-1579 | Glycan_Motif | denotes | chondroitin | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G43702JT |
GGDB-2020
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 62-73 | https://acgg.asia/db/ggdb/info/gg166 | denotes | CSGalNAcT-1 |
| T2 | 664-675 | https://acgg.asia/db/ggdb/info/gg166 | denotes | CSGalNAcT-1 |
| T3 | 1178-1189 | https://acgg.asia/db/ggdb/info/gg166 | denotes | CSGalNAcT-1 |
| T4 | 1211-1222 | https://acgg.asia/db/ggdb/info/gg166 | denotes | CSGalNAcT-1 |
| T5 | 1523-1534 | https://acgg.asia/db/ggdb/info/gg166 | denotes | CSGalNAcT-1 |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-107 | Sentence | denotes | Differential roles of two N-acetylgalactosaminyltransferases, CSGalNAcT-1, and a novel enzyme, CSGalNAcT-2. |
| T2 | 108-170 | Sentence | denotes | Initiation and elongation in synthesis of chondroitin sulfate. |
| T3 | 171-345 | Sentence | denotes | By a tblastn search with beta 1,4-galactosyltransferases as query sequences, we found an expressed sequence tag that showed similarity in beta 1,4-glycosyltransferase motifs. |
| T4 | 346-457 | Sentence | denotes | The full-length complementary DNA was obtained by a method of 5'-rapid amplification of complementary DNA ends. |
| T5 | 458-726 | Sentence | denotes | The predicted open reading frame encodes a typical type II membrane protein comprising 543 amino acids, the sequence of which was highly homologous to chondroitin sulfate N-acetylgalactosaminyltransferase (CSGalNAcT-1), and we designated this novel enzyme CSGalNAcT-2. |
| T6 | 727-1190 | Sentence | denotes | CSGalNAcT-2 showed much stronger N-acetylgalactosaminyltransferase activity toward glucuronic acid of chondroitin poly- and oligosaccharides, and chondroitin sulfate poly- and oligosaccharides with a beta 1-4 linkage, i.e. elongation activity for chondroitin and chondroitin sulfate, but showed much weaker activity toward a tetrasaccharide of the glycosaminoglycan linkage structure (GlcA-Gal-Gal-Xyl-O-methoxyphenyl), i.e. initiation activity, than CSGalNAcT-1. |
| T7 | 1191-1489 | Sentence | denotes | Transfection of the CSGalNAcT-1 gene into Chinese hamster ovary cells yielded a change of glycosaminoglycan composition, i.e. the replacement of heparan sulfate on a syndecan-4/fibroblast growth factor-1 chimera protein by chondroitin sulfate, however, transfection of the CSGalNAcT-2 gene did not. |
| T8 | 1490-1673 | Sentence | denotes | The above results indicated that CSGalNAcT-1 is involved in the initiation of chondroitin sulfate synthesis, whereas CSGalNAcT-2 participates mainly in the elongation, not initiation. |
| T9 | 1674-1890 | Sentence | denotes | Quantitative real-time PCR analysis revealed that CSGalNAcT-2 transcripts were highly expressed in the small intestine, leukocytes, and spleen, however, both CSGalNAcTs were ubiquitously expressed in various tissues. |
GlyCosmos6-Glycan-Motif-Structure
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 150-161 | https://glytoucan.org/Structures/Glycans/G43702JT | denotes | chondroitin |
| T2 | 609-620 | https://glytoucan.org/Structures/Glycans/G43702JT | denotes | chondroitin |
| T3 | 829-840 | https://glytoucan.org/Structures/Glycans/G43702JT | denotes | chondroitin |
| T4 | 873-884 | https://glytoucan.org/Structures/Glycans/G43702JT | denotes | chondroitin |
| T5 | 974-985 | https://glytoucan.org/Structures/Glycans/G43702JT | denotes | chondroitin |
| T6 | 990-1001 | https://glytoucan.org/Structures/Glycans/G43702JT | denotes | chondroitin |
| T7 | 1414-1425 | https://glytoucan.org/Structures/Glycans/G43702JT | denotes | chondroitin |
| T8 | 1568-1579 | https://glytoucan.org/Structures/Glycans/G43702JT | denotes | chondroitin |
Glycosmos6-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 150-161 | http://www.glycoepitope.jp/epitopes/EP0081 | denotes | chondroitin |
| T2 | 609-620 | http://www.glycoepitope.jp/epitopes/EP0081 | denotes | chondroitin |
| T3 | 829-840 | http://www.glycoepitope.jp/epitopes/EP0081 | denotes | chondroitin |
| T4 | 873-884 | http://www.glycoepitope.jp/epitopes/EP0081 | denotes | chondroitin |
| T5 | 974-985 | http://www.glycoepitope.jp/epitopes/EP0081 | denotes | chondroitin |
| T6 | 990-1001 | http://www.glycoepitope.jp/epitopes/EP0081 | denotes | chondroitin |
| T7 | 1336-1351 | http://www.glycoepitope.jp/epitopes/EP0086 | denotes | heparan sulfate |
| T8 | 1414-1425 | http://www.glycoepitope.jp/epitopes/EP0081 | denotes | chondroitin |
| T9 | 1568-1579 | http://www.glycoepitope.jp/epitopes/EP0081 | denotes | chondroitin |
Glycosmos6-MAT
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 1777-1792 | http://purl.obolibrary.org/obo/MAT_0000047 | denotes | small intestine |
| T2 | 1783-1792 | http://purl.obolibrary.org/obo/MAT_0000043 | denotes | intestine |
| T3 | 1810-1816 | http://purl.obolibrary.org/obo/MAT_0000085 | denotes | spleen |
glycogenes
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| PD-GlycoGenes20190927-B_T1 | 62-73 | https://acgg.asia/db/ggdb/info/gg165 | denotes | CSGalNAcT-1 |
| PD-GlycoGenes20190927-B_T2 | 95-106 | https://acgg.asia/db/ggdb/info/gg166 | denotes | CSGalNAcT-2 |
| PD-GlycoGenes20190927-B_T3 | 514-516 | https://acgg.asia/db/ggdb/info/gg111 | denotes | II |
| PD-GlycoGenes20190927-B_T4 | 664-675 | https://acgg.asia/db/ggdb/info/gg165 | denotes | CSGalNAcT-1 |
| PD-GlycoGenes20190927-B_T5 | 685-695 | url | denotes | designated |
| PD-GlycoGenes20190927-B_T6 | 714-725 | https://acgg.asia/db/ggdb/info/gg166 | denotes | CSGalNAcT-2 |
| PD-GlycoGenes20190927-B_T7 | 727-738 | https://acgg.asia/db/ggdb/info/gg166 | denotes | CSGalNAcT-2 |
| PD-GlycoGenes20190927-B_T8 | 1178-1189 | https://acgg.asia/db/ggdb/info/gg165 | denotes | CSGalNAcT-1 |
| PD-GlycoGenes20190927-B_T9 | 1211-1222 | https://acgg.asia/db/ggdb/info/gg165 | denotes | CSGalNAcT-1 |
| PD-GlycoGenes20190927-B_T10 | 1464-1475 | https://acgg.asia/db/ggdb/info/gg166 | denotes | CSGalNAcT-2 |
| PD-GlycoGenes20190927-B_T11 | 1523-1534 | https://acgg.asia/db/ggdb/info/gg165 | denotes | CSGalNAcT-1 |
| PD-GlycoGenes20190927-B_T12 | 1607-1618 | https://acgg.asia/db/ggdb/info/gg166 | denotes | CSGalNAcT-2 |
| PD-GlycoGenes20190927-B_T13 | 1724-1735 | https://acgg.asia/db/ggdb/info/gg166 | denotes | CSGalNAcT-2 |
NCBITAXON
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| T1 | 1233-1248 | OrganismTaxon | denotes | Chinese hamster | 10029 |
Glycosmos15-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue | glycoepitope_id |
|---|---|---|---|---|---|
| T1 | 150-161 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | chondroitin | http://www.glycoepitope.jp/epitopes/EP0081 |
| T2 | 609-620 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | chondroitin | http://www.glycoepitope.jp/epitopes/EP0081 |
| T3 | 829-840 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | chondroitin | http://www.glycoepitope.jp/epitopes/EP0081 |
| T4 | 873-884 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | chondroitin | http://www.glycoepitope.jp/epitopes/EP0081 |
| T5 | 974-985 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | chondroitin | http://www.glycoepitope.jp/epitopes/EP0081 |
| T6 | 990-1001 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | chondroitin | http://www.glycoepitope.jp/epitopes/EP0081 |
| T7 | 1336-1351 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | heparan sulfate | http://www.glycoepitope.jp/epitopes/EP0086 |
| T8 | 1414-1425 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | chondroitin | http://www.glycoepitope.jp/epitopes/EP0081 |
| T9 | 1568-1579 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | chondroitin | http://www.glycoepitope.jp/epitopes/EP0081 |
Anatomy-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 517-525 | Body_part | denotes | membrane | http://purl.obolibrary.org/obo/GO_0016020|http://purl.obolibrary.org/obo/UBERON_0000094|http://purl.obolibrary.org/obo/UBERON_0000158 |
| T4 | 1249-1254 | Body_part | denotes | ovary | http://purl.obolibrary.org/obo/UBERON_0000992 |
| T5 | 1368-1378 | Body_part | denotes | fibroblast | http://purl.obolibrary.org/obo/CL_0000057 |
| T6 | 1777-1792 | Body_part | denotes | small intestine | http://purl.obolibrary.org/obo/UBERON_0002108 |
| T7 | 1794-1804 | Body_part | denotes | leukocytes | http://purl.obolibrary.org/obo/CL_0000738 |
| T8 | 1810-1816 | Body_part | denotes | spleen | http://purl.obolibrary.org/obo/UBERON_0002106 |
Anatomy-MAT
| Id | Subject | Object | Predicate | Lexical cue | mat_id |
|---|---|---|---|---|---|
| T1 | 1777-1792 | Body_part | denotes | small intestine | http://purl.obolibrary.org/obo/MAT_0000047 |
| T2 | 1810-1816 | Body_part | denotes | spleen | http://purl.obolibrary.org/obo/MAT_0000085 |
Glycosmos15-CL
| Id | Subject | Object | Predicate | Lexical cue | cl_id |
|---|---|---|---|---|---|
| T1 | 841-845 | Cell | denotes | poly | http://purl.obolibrary.org/obo/CL:0000096|http://purl.obolibrary.org/obo/CL:0000775 |
| T3 | 893-897 | Cell | denotes | poly | http://purl.obolibrary.org/obo/CL:0000096|http://purl.obolibrary.org/obo/CL:0000775 |
| T5 | 1368-1378 | Cell | denotes | fibroblast | http://purl.obolibrary.org/obo/CL:0000057 |
| T6 | 1794-1804 | Cell | denotes | leukocytes | http://purl.obolibrary.org/obo/CL:0000738 |