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PubMed:12446672 JSONTXT

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ggdb-test

Id Subject Object Predicate Lexical cue
T1 62-73 https://acgg.asia/db/ggdb/info/gg166 denotes CSGalNAcT-1
T2 664-675 https://acgg.asia/db/ggdb/info/gg166 denotes CSGalNAcT-1
T3 1178-1189 https://acgg.asia/db/ggdb/info/gg166 denotes CSGalNAcT-1
T4 1211-1222 https://acgg.asia/db/ggdb/info/gg166 denotes CSGalNAcT-1
T5 1523-1534 https://acgg.asia/db/ggdb/info/gg166 denotes CSGalNAcT-1

GlyCosmos6-Glycan-Motif-Image

Id Subject Object Predicate Lexical cue image
T1 150-161 Glycan_Motif denotes chondroitin https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G43702JT
T2 609-620 Glycan_Motif denotes chondroitin https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G43702JT
T3 829-840 Glycan_Motif denotes chondroitin https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G43702JT
T4 873-884 Glycan_Motif denotes chondroitin https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G43702JT
T5 974-985 Glycan_Motif denotes chondroitin https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G43702JT
T6 990-1001 Glycan_Motif denotes chondroitin https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G43702JT
T7 1414-1425 Glycan_Motif denotes chondroitin https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G43702JT
T8 1568-1579 Glycan_Motif denotes chondroitin https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G43702JT

GGDB-2020

Id Subject Object Predicate Lexical cue
T1 62-73 https://acgg.asia/db/ggdb/info/gg166 denotes CSGalNAcT-1
T2 664-675 https://acgg.asia/db/ggdb/info/gg166 denotes CSGalNAcT-1
T3 1178-1189 https://acgg.asia/db/ggdb/info/gg166 denotes CSGalNAcT-1
T4 1211-1222 https://acgg.asia/db/ggdb/info/gg166 denotes CSGalNAcT-1
T5 1523-1534 https://acgg.asia/db/ggdb/info/gg166 denotes CSGalNAcT-1

sentences

Id Subject Object Predicate Lexical cue
T1 0-107 Sentence denotes Differential roles of two N-acetylgalactosaminyltransferases, CSGalNAcT-1, and a novel enzyme, CSGalNAcT-2.
T2 108-170 Sentence denotes Initiation and elongation in synthesis of chondroitin sulfate.
T3 171-345 Sentence denotes By a tblastn search with beta 1,4-galactosyltransferases as query sequences, we found an expressed sequence tag that showed similarity in beta 1,4-glycosyltransferase motifs.
T4 346-457 Sentence denotes The full-length complementary DNA was obtained by a method of 5'-rapid amplification of complementary DNA ends.
T5 458-726 Sentence denotes The predicted open reading frame encodes a typical type II membrane protein comprising 543 amino acids, the sequence of which was highly homologous to chondroitin sulfate N-acetylgalactosaminyltransferase (CSGalNAcT-1), and we designated this novel enzyme CSGalNAcT-2.
T6 727-1190 Sentence denotes CSGalNAcT-2 showed much stronger N-acetylgalactosaminyltransferase activity toward glucuronic acid of chondroitin poly- and oligosaccharides, and chondroitin sulfate poly- and oligosaccharides with a beta 1-4 linkage, i.e. elongation activity for chondroitin and chondroitin sulfate, but showed much weaker activity toward a tetrasaccharide of the glycosaminoglycan linkage structure (GlcA-Gal-Gal-Xyl-O-methoxyphenyl), i.e. initiation activity, than CSGalNAcT-1.
T7 1191-1489 Sentence denotes Transfection of the CSGalNAcT-1 gene into Chinese hamster ovary cells yielded a change of glycosaminoglycan composition, i.e. the replacement of heparan sulfate on a syndecan-4/fibroblast growth factor-1 chimera protein by chondroitin sulfate, however, transfection of the CSGalNAcT-2 gene did not.
T8 1490-1673 Sentence denotes The above results indicated that CSGalNAcT-1 is involved in the initiation of chondroitin sulfate synthesis, whereas CSGalNAcT-2 participates mainly in the elongation, not initiation.
T9 1674-1890 Sentence denotes Quantitative real-time PCR analysis revealed that CSGalNAcT-2 transcripts were highly expressed in the small intestine, leukocytes, and spleen, however, both CSGalNAcTs were ubiquitously expressed in various tissues.

GlyCosmos6-Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T1 150-161 https://glytoucan.org/Structures/Glycans/G43702JT denotes chondroitin
T2 609-620 https://glytoucan.org/Structures/Glycans/G43702JT denotes chondroitin
T3 829-840 https://glytoucan.org/Structures/Glycans/G43702JT denotes chondroitin
T4 873-884 https://glytoucan.org/Structures/Glycans/G43702JT denotes chondroitin
T5 974-985 https://glytoucan.org/Structures/Glycans/G43702JT denotes chondroitin
T6 990-1001 https://glytoucan.org/Structures/Glycans/G43702JT denotes chondroitin
T7 1414-1425 https://glytoucan.org/Structures/Glycans/G43702JT denotes chondroitin
T8 1568-1579 https://glytoucan.org/Structures/Glycans/G43702JT denotes chondroitin

Glycosmos6-GlycoEpitope

Id Subject Object Predicate Lexical cue
T1 150-161 http://www.glycoepitope.jp/epitopes/EP0081 denotes chondroitin
T2 609-620 http://www.glycoepitope.jp/epitopes/EP0081 denotes chondroitin
T3 829-840 http://www.glycoepitope.jp/epitopes/EP0081 denotes chondroitin
T4 873-884 http://www.glycoepitope.jp/epitopes/EP0081 denotes chondroitin
T5 974-985 http://www.glycoepitope.jp/epitopes/EP0081 denotes chondroitin
T6 990-1001 http://www.glycoepitope.jp/epitopes/EP0081 denotes chondroitin
T7 1336-1351 http://www.glycoepitope.jp/epitopes/EP0086 denotes heparan sulfate
T8 1414-1425 http://www.glycoepitope.jp/epitopes/EP0081 denotes chondroitin
T9 1568-1579 http://www.glycoepitope.jp/epitopes/EP0081 denotes chondroitin

Glycosmos6-MAT

Id Subject Object Predicate Lexical cue
T1 1777-1792 http://purl.obolibrary.org/obo/MAT_0000047 denotes small intestine
T2 1783-1792 http://purl.obolibrary.org/obo/MAT_0000043 denotes intestine
T3 1810-1816 http://purl.obolibrary.org/obo/MAT_0000085 denotes spleen

glycogenes

Id Subject Object Predicate Lexical cue
PD-GlycoGenes20190927-B_T1 62-73 https://acgg.asia/db/ggdb/info/gg165 denotes CSGalNAcT-1
PD-GlycoGenes20190927-B_T2 95-106 https://acgg.asia/db/ggdb/info/gg166 denotes CSGalNAcT-2
PD-GlycoGenes20190927-B_T3 514-516 https://acgg.asia/db/ggdb/info/gg111 denotes II
PD-GlycoGenes20190927-B_T4 664-675 https://acgg.asia/db/ggdb/info/gg165 denotes CSGalNAcT-1
PD-GlycoGenes20190927-B_T5 685-695 url denotes designated
PD-GlycoGenes20190927-B_T6 714-725 https://acgg.asia/db/ggdb/info/gg166 denotes CSGalNAcT-2
PD-GlycoGenes20190927-B_T7 727-738 https://acgg.asia/db/ggdb/info/gg166 denotes CSGalNAcT-2
PD-GlycoGenes20190927-B_T8 1178-1189 https://acgg.asia/db/ggdb/info/gg165 denotes CSGalNAcT-1
PD-GlycoGenes20190927-B_T9 1211-1222 https://acgg.asia/db/ggdb/info/gg165 denotes CSGalNAcT-1
PD-GlycoGenes20190927-B_T10 1464-1475 https://acgg.asia/db/ggdb/info/gg166 denotes CSGalNAcT-2
PD-GlycoGenes20190927-B_T11 1523-1534 https://acgg.asia/db/ggdb/info/gg165 denotes CSGalNAcT-1
PD-GlycoGenes20190927-B_T12 1607-1618 https://acgg.asia/db/ggdb/info/gg166 denotes CSGalNAcT-2
PD-GlycoGenes20190927-B_T13 1724-1735 https://acgg.asia/db/ggdb/info/gg166 denotes CSGalNAcT-2

Glycan-GlyCosmos

Id Subject Object Predicate Lexical cue image
T1 150-161 Glycan denotes chondroitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G43702JT
T2 609-620 Glycan denotes chondroitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G43702JT
T3 829-840 Glycan denotes chondroitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G43702JT
T4 873-884 Glycan denotes chondroitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G43702JT
T5 974-985 Glycan denotes chondroitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G43702JT
T6 990-1001 Glycan denotes chondroitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G43702JT
T7 1414-1425 Glycan denotes chondroitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G43702JT
T8 1568-1579 Glycan denotes chondroitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G43702JT
T21 1336-1351 Glycan denotes heparan sulfate https://api.glycosmos.org/wurcs2image/latest/png/binary/G17927IW

GlyCosmos-GlycoEpitope

Id Subject Object Predicate Lexical cue glycoepitope_id
T1 150-161 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes chondroitin http://www.glycoepitope.jp/epitopes/EP0081
T2 609-620 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes chondroitin http://www.glycoepitope.jp/epitopes/EP0081
T3 829-840 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes chondroitin http://www.glycoepitope.jp/epitopes/EP0081
T4 873-884 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes chondroitin http://www.glycoepitope.jp/epitopes/EP0081
T5 974-985 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes chondroitin http://www.glycoepitope.jp/epitopes/EP0081
T6 990-1001 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes chondroitin http://www.glycoepitope.jp/epitopes/EP0081
T7 1336-1351 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes heparan sulfate http://www.glycoepitope.jp/epitopes/EP0086
T8 1414-1425 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes chondroitin http://www.glycoepitope.jp/epitopes/EP0081
T9 1568-1579 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes chondroitin http://www.glycoepitope.jp/epitopes/EP0081

GlyCosmos15-NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 1233-1248 OrganismTaxon denotes Chinese hamster 10029

GlyCosmos15-CL

Id Subject Object Predicate Lexical cue cl_id
T1 841-845 Cell denotes poly http://purl.obolibrary.org/obo/CL:0000096|http://purl.obolibrary.org/obo/CL:0000775
T3 893-897 Cell denotes poly http://purl.obolibrary.org/obo/CL:0000096|http://purl.obolibrary.org/obo/CL:0000775
T5 1368-1378 Cell denotes fibroblast http://purl.obolibrary.org/obo/CL:0000057
T6 1794-1804 Cell denotes leukocytes http://purl.obolibrary.org/obo/CL:0000738

GlyCosmos15-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 517-525 Body_part denotes membrane http://purl.obolibrary.org/obo/GO_0016020|http://purl.obolibrary.org/obo/UBERON_0000094|http://purl.obolibrary.org/obo/UBERON_0000158
T4 1249-1254 Body_part denotes ovary http://purl.obolibrary.org/obo/UBERON_0000992
T5 1368-1378 Body_part denotes fibroblast http://purl.obolibrary.org/obo/CL_0000057
T6 1777-1792 Body_part denotes small intestine http://purl.obolibrary.org/obo/UBERON_0002108
T7 1794-1804 Body_part denotes leukocytes http://purl.obolibrary.org/obo/CL_0000738
T8 1810-1816 Body_part denotes spleen http://purl.obolibrary.org/obo/UBERON_0002106

GlyCosmos15-MAT

Id Subject Object Predicate Lexical cue mat_id
T1 1777-1792 Body_part denotes small intestine http://purl.obolibrary.org/obo/MAT_0000047
T2 1810-1816 Body_part denotes spleen http://purl.obolibrary.org/obo/MAT_0000085

sentences

Id Subject Object Predicate Lexical cue
T1 0-107 Sentence denotes Differential roles of two N-acetylgalactosaminyltransferases, CSGalNAcT-1, and a novel enzyme, CSGalNAcT-2.
T2 108-170 Sentence denotes Initiation and elongation in synthesis of chondroitin sulfate.
T3 171-345 Sentence denotes By a tblastn search with beta 1,4-galactosyltransferases as query sequences, we found an expressed sequence tag that showed similarity in beta 1,4-glycosyltransferase motifs.
T4 346-457 Sentence denotes The full-length complementary DNA was obtained by a method of 5'-rapid amplification of complementary DNA ends.
T5 458-726 Sentence denotes The predicted open reading frame encodes a typical type II membrane protein comprising 543 amino acids, the sequence of which was highly homologous to chondroitin sulfate N-acetylgalactosaminyltransferase (CSGalNAcT-1), and we designated this novel enzyme CSGalNAcT-2.
T6 727-1190 Sentence denotes CSGalNAcT-2 showed much stronger N-acetylgalactosaminyltransferase activity toward glucuronic acid of chondroitin poly- and oligosaccharides, and chondroitin sulfate poly- and oligosaccharides with a beta 1-4 linkage, i.e. elongation activity for chondroitin and chondroitin sulfate, but showed much weaker activity toward a tetrasaccharide of the glycosaminoglycan linkage structure (GlcA-Gal-Gal-Xyl-O-methoxyphenyl), i.e. initiation activity, than CSGalNAcT-1.
T7 1191-1489 Sentence denotes Transfection of the CSGalNAcT-1 gene into Chinese hamster ovary cells yielded a change of glycosaminoglycan composition, i.e. the replacement of heparan sulfate on a syndecan-4/fibroblast growth factor-1 chimera protein by chondroitin sulfate, however, transfection of the CSGalNAcT-2 gene did not.
T8 1490-1673 Sentence denotes The above results indicated that CSGalNAcT-1 is involved in the initiation of chondroitin sulfate synthesis, whereas CSGalNAcT-2 participates mainly in the elongation, not initiation.
T9 1674-1890 Sentence denotes Quantitative real-time PCR analysis revealed that CSGalNAcT-2 transcripts were highly expressed in the small intestine, leukocytes, and spleen, however, both CSGalNAcTs were ubiquitously expressed in various tissues.

GlyCosmos15-Sentences

Id Subject Object Predicate Lexical cue
T1 0-107 Sentence denotes Differential roles of two N-acetylgalactosaminyltransferases, CSGalNAcT-1, and a novel enzyme, CSGalNAcT-2.
T2 108-170 Sentence denotes Initiation and elongation in synthesis of chondroitin sulfate.
T3 171-345 Sentence denotes By a tblastn search with beta 1,4-galactosyltransferases as query sequences, we found an expressed sequence tag that showed similarity in beta 1,4-glycosyltransferase motifs.
T4 346-457 Sentence denotes The full-length complementary DNA was obtained by a method of 5'-rapid amplification of complementary DNA ends.
T5 458-726 Sentence denotes The predicted open reading frame encodes a typical type II membrane protein comprising 543 amino acids, the sequence of which was highly homologous to chondroitin sulfate N-acetylgalactosaminyltransferase (CSGalNAcT-1), and we designated this novel enzyme CSGalNAcT-2.
T6 727-1190 Sentence denotes CSGalNAcT-2 showed much stronger N-acetylgalactosaminyltransferase activity toward glucuronic acid of chondroitin poly- and oligosaccharides, and chondroitin sulfate poly- and oligosaccharides with a beta 1-4 linkage, i.e. elongation activity for chondroitin and chondroitin sulfate, but showed much weaker activity toward a tetrasaccharide of the glycosaminoglycan linkage structure (GlcA-Gal-Gal-Xyl-O-methoxyphenyl), i.e. initiation activity, than CSGalNAcT-1.
T7 1191-1489 Sentence denotes Transfection of the CSGalNAcT-1 gene into Chinese hamster ovary cells yielded a change of glycosaminoglycan composition, i.e. the replacement of heparan sulfate on a syndecan-4/fibroblast growth factor-1 chimera protein by chondroitin sulfate, however, transfection of the CSGalNAcT-2 gene did not.
T8 1490-1673 Sentence denotes The above results indicated that CSGalNAcT-1 is involved in the initiation of chondroitin sulfate synthesis, whereas CSGalNAcT-2 participates mainly in the elongation, not initiation.
T9 1674-1890 Sentence denotes Quantitative real-time PCR analysis revealed that CSGalNAcT-2 transcripts were highly expressed in the small intestine, leukocytes, and spleen, however, both CSGalNAcTs were ubiquitously expressed in various tissues.

GlyCosmos15-Glycan

Id Subject Object Predicate Lexical cue image
T1 150-161 Glycan denotes chondroitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G43702JT
T2 609-620 Glycan denotes chondroitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G43702JT
T3 829-840 Glycan denotes chondroitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G43702JT
T4 873-884 Glycan denotes chondroitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G43702JT
T5 974-985 Glycan denotes chondroitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G43702JT
T6 990-1001 Glycan denotes chondroitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G43702JT
T7 1414-1425 Glycan denotes chondroitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G43702JT
T8 1568-1579 Glycan denotes chondroitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G43702JT
T21 1336-1351 Glycan denotes heparan sulfate https://api.glycosmos.org/wurcs2image/latest/png/binary/G17927IW

GlyCosmos15-GlycoEpitope

Id Subject Object Predicate Lexical cue glycoepitope_id
T1 150-161 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes chondroitin http://www.glycoepitope.jp/epitopes/EP0081
T2 609-620 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes chondroitin http://www.glycoepitope.jp/epitopes/EP0081
T3 829-840 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes chondroitin http://www.glycoepitope.jp/epitopes/EP0081
T4 873-884 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes chondroitin http://www.glycoepitope.jp/epitopes/EP0081
T5 974-985 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes chondroitin http://www.glycoepitope.jp/epitopes/EP0081
T6 990-1001 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes chondroitin http://www.glycoepitope.jp/epitopes/EP0081
T7 1336-1351 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes heparan sulfate http://www.glycoepitope.jp/epitopes/EP0086
T8 1414-1425 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes chondroitin http://www.glycoepitope.jp/epitopes/EP0081
T9 1568-1579 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes chondroitin http://www.glycoepitope.jp/epitopes/EP0081

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 1233-1248 OrganismTaxon denotes Chinese hamster 10029

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 517-525 Body_part denotes membrane http://purl.obolibrary.org/obo/GO_0016020|http://purl.obolibrary.org/obo/UBERON_0000094|http://purl.obolibrary.org/obo/UBERON_0000158
T4 1249-1254 Body_part denotes ovary http://purl.obolibrary.org/obo/UBERON_0000992
T5 1368-1378 Body_part denotes fibroblast http://purl.obolibrary.org/obo/CL_0000057
T6 1777-1792 Body_part denotes small intestine http://purl.obolibrary.org/obo/UBERON_0002108
T7 1794-1804 Body_part denotes leukocytes http://purl.obolibrary.org/obo/CL_0000738
T8 1810-1816 Body_part denotes spleen http://purl.obolibrary.org/obo/UBERON_0002106

Anatomy-MAT

Id Subject Object Predicate Lexical cue mat_id
T1 1777-1792 Body_part denotes small intestine http://purl.obolibrary.org/obo/MAT_0000047
T2 1810-1816 Body_part denotes spleen http://purl.obolibrary.org/obo/MAT_0000085

CL-cell

Id Subject Object Predicate Lexical cue cl_id
T1 841-845 Cell denotes poly http://purl.obolibrary.org/obo/CL:0000096|http://purl.obolibrary.org/obo/CL:0000775
T3 893-897 Cell denotes poly http://purl.obolibrary.org/obo/CL:0000096|http://purl.obolibrary.org/obo/CL:0000775
T5 1368-1378 Cell denotes fibroblast http://purl.obolibrary.org/obo/CL:0000057
T6 1794-1804 Cell denotes leukocytes http://purl.obolibrary.org/obo/CL:0000738