PubMed:11826308
Annnotations
Oryza-OGER
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 4-8 | http://id.nlm.nih.gov/mesh/D012275 | denotes | rice |
| T2 | 4-8 | http://purl.bioontology.org/ontology/RXNORM/1311040 | denotes | rice |
| T3 | 4-8 | http://www.ncbi.nlm.nih.gov/taxonomy/4530 | denotes | rice |
| T4 | 9-15 | http://www.uniprot.org/uniprot/P31008 | denotes | cyclin |
| T5 | 9-15 | http://www.uniprot.org/uniprot/Q00265 | denotes | cyclin |
| T6 | 9-15 | http://www.uniprot.org/uniprot/P04961 | denotes | cyclin |
| T7 | 9-15 | http://www.uniprot.org/uniprot/O16852 | denotes | cyclin |
| T8 | 9-15 | http://www.uniprot.org/uniprot/P53358 | denotes | cyclin |
| T9 | 9-15 | http://www.uniprot.org/uniprot/O01377 | denotes | cyclin |
| T10 | 9-15 | http://www.uniprot.org/uniprot/P17918 | denotes | cyclin |
| T11 | 9-15 | http://purl.obolibrary.org/obo/GO_0016538 | denotes | cyclin |
| T12 | 9-15 | http://www.uniprot.org/uniprot/P17917 | denotes | cyclin |
| T13 | 9-15 | http://www.uniprot.org/uniprot/P22177 | denotes | cyclin |
| T14 | 9-15 | http://purl.obolibrary.org/obo/PR_000012421 | denotes | cyclin |
| T15 | 9-15 | http://www.uniprot.org/uniprot/P12004 | denotes | cyclin |
| T16 | 9-15 | http://www.uniprot.org/uniprot/P17070 | denotes | cyclin |
| T17 | 9-15 | http://www.uniprot.org/uniprot/P61074 | denotes | cyclin |
| T18 | 9-15 | http://www.uniprot.org/uniprot/Q00268 | denotes | cyclin |
| T19 | 9-15 | PCNA | denotes | cyclin |
| T20 | 9-15 | http://id.nlm.nih.gov/mesh/D016213 | denotes | cyclin |
| T21 | 9-15 | http://www.uniprot.org/uniprot/P24314 | denotes | cyclin |
| T22 | 9-15 | http://www.uniprot.org/uniprot/P18248 | denotes | cyclin |
| T23 | 9-50 | http://id.nlm.nih.gov/mesh/C066067 | denotes | cyclin-dependent kinase-activating kinase |
| T24 | 9-53 | CDKD;1 | denotes | cyclin-dependent kinase-activating kinase R2 |
| T25 | 26-32 | http://id.nlm.nih.gov/mesh/D010770 | denotes | kinase |
| T26 | 44-50 | http://id.nlm.nih.gov/mesh/D010770 | denotes | kinase |
| T27 | 52-53 | AMT1;3 | denotes | 2 |
| T28 | 64-71 | http://purl.obolibrary.org/obo/GO_0051320 | denotes | S-phase |
| T29 | 85-91 | http://www.uniprot.org/uniprot/P31008 | denotes | Cyclin |
| T30 | 85-91 | http://www.uniprot.org/uniprot/Q00265 | denotes | Cyclin |
| T31 | 85-91 | http://www.uniprot.org/uniprot/P04961 | denotes | Cyclin |
| T32 | 85-91 | http://www.uniprot.org/uniprot/O16852 | denotes | Cyclin |
| T33 | 85-91 | http://www.uniprot.org/uniprot/P53358 | denotes | Cyclin |
| T34 | 85-91 | http://www.uniprot.org/uniprot/O01377 | denotes | Cyclin |
| T35 | 85-91 | http://www.uniprot.org/uniprot/P17918 | denotes | Cyclin |
| T36 | 85-91 | http://purl.obolibrary.org/obo/GO_0016538 | denotes | Cyclin |
| T37 | 85-91 | http://www.uniprot.org/uniprot/P17917 | denotes | Cyclin |
| T38 | 85-91 | http://www.uniprot.org/uniprot/P22177 | denotes | Cyclin |
| T39 | 85-91 | http://purl.obolibrary.org/obo/PR_000012421 | denotes | Cyclin |
| T40 | 85-91 | http://www.uniprot.org/uniprot/P12004 | denotes | Cyclin |
| T41 | 85-91 | http://www.uniprot.org/uniprot/P17070 | denotes | Cyclin |
| T42 | 85-91 | http://www.uniprot.org/uniprot/P61074 | denotes | Cyclin |
| T43 | 85-91 | http://www.uniprot.org/uniprot/Q00268 | denotes | Cyclin |
| T44 | 85-91 | PCNA | denotes | Cyclin |
| T45 | 85-91 | http://id.nlm.nih.gov/mesh/D016213 | denotes | Cyclin |
| T46 | 85-91 | http://www.uniprot.org/uniprot/P24314 | denotes | Cyclin |
| T47 | 85-91 | http://www.uniprot.org/uniprot/P18248 | denotes | Cyclin |
| T48 | 85-109 | http://id.nlm.nih.gov/mesh/D018844 | denotes | Cyclin-dependent kinases |
| T49 | 102-109 | http://id.nlm.nih.gov/mesh/D010770 | denotes | kinases |
| T50 | 117-120 | http://purl.obolibrary.org/obo/SO_0001180 | denotes | are |
| T51 | 117-120 | http://purl.obolibrary.org/obo/SO_0001853 | denotes | are |
| T52 | 147-162 | http://purl.obolibrary.org/obo/CL_0000255 | denotes | eukaryotic cell |
| T53 | 158-162 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T54 | 158-162 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell |
| T55 | 158-168 | http://purl.obolibrary.org/obo/GO_0007049 | denotes | cell cycle |
| T56 | 158-168 | http://purl.obolibrary.org/obo/UBERON_2000098 | denotes | cell cycle |
| T57 | 158-179 | http://purl.obolibrary.org/obo/GO_0051726 | denotes | cell cycle regulation |
| T58 | 169-179 | http://purl.obolibrary.org/obo/GO_0065007 | denotes | regulation |
| T59 | 181-196 | http://purl.obolibrary.org/obo/GO_0016310 | denotes | Phosphorylation |
| T60 | 210-219 | http://purl.obolibrary.org/obo/SO_0000856 | denotes | conserved |
| T61 | 220-229 | http://purl.obolibrary.org/obo/SO_0001445 | denotes | threonine |
| T62 | 220-229 | http://id.nlm.nih.gov/mesh/D013912 | denotes | threonine |
| T63 | 220-229 | http://purl.obolibrary.org/obo/CHEBI_16857 | denotes | threonine |
| T64 | 220-229 | http://id.nlm.nih.gov/mesh/D013912 | denotes | threonine |
| T65 | 220-229 | http://purl.obolibrary.org/obo/CHEBI_26986 | denotes | threonine |
| T66 | 220-229 | http://purl.bioontology.org/ontology/RXNORM/10524 | denotes | threonine |
| T67 | 220-237 | http://purl.obolibrary.org/obo/CHEBI_32835 | denotes | threonine residue |
| T68 | 250-253 | http://purl.obolibrary.org/obo/PR_Q9NZC7 | denotes | for |
| T69 | 250-253 | http://purl.obolibrary.org/obo/PR_000001036 | denotes | for |
| T70 | 260-264 | http://www.uniprot.org/uniprot/Q8N1N2 | denotes | full |
| T71 | 274-277 | http://purl.obolibrary.org/obo/PR_P49258 | denotes | and |
| T72 | 274-277 | http://www.ncbi.nlm.nih.gov/taxonomy/1481724 | denotes | and |
| T73 | 295-298 | http://purl.obolibrary.org/obo/PR_000003270 | denotes | CDK |
| T74 | 295-298 | http://www.uniprot.org/uniprot/Q0P8J9 | denotes | CDK |
| T75 | 295-298 | http://purl.obolibrary.org/obo/GO_0004693 | denotes | CDK |
| T76 | 295-298 | http://web.expasy.org/cellosaurus/CVCL_R774 | denotes | CDK |
| T77 | 295-316 | http://www.uniprot.org/uniprot/Q03147 | denotes | CDK-activating kinase |
| T78 | 295-316 | http://purl.obolibrary.org/obo/PR_000005265 | denotes | CDK-activating kinase |
| T79 | 295-316 | http://www.uniprot.org/uniprot/P43568 | denotes | CDK-activating kinase |
| T80 | 295-316 | http://www.uniprot.org/uniprot/P54685 | denotes | CDK-activating kinase |
| T81 | 295-316 | http://purl.obolibrary.org/obo/PR_000029241 | denotes | CDK-activating kinase |
| T82 | 295-316 | http://id.nlm.nih.gov/mesh/C066067 | denotes | CDK-activating kinase |
| T83 | 310-316 | http://id.nlm.nih.gov/mesh/D010770 | denotes | kinase |
| T84 | 318-321 | http://purl.obolibrary.org/obo/PR_P50613 | denotes | CAK |
| T85 | 318-321 | http://web.expasy.org/cellosaurus/CVCL_HE49 | denotes | CAK |
| T86 | 318-321 | http://purl.obolibrary.org/obo/PR_Q03146 | denotes | CAK |
| T87 | 318-321 | http://www.uniprot.org/uniprot/E2S064 | denotes | CAK |
| T88 | 318-321 | http://purl.obolibrary.org/obo/PR_000001445 | denotes | CAK |
| T89 | 318-321 | http://purl.obolibrary.org/obo/PR_000005265 | denotes | CAK |
| T90 | 318-321 | http://purl.obolibrary.org/obo/GO_0019912 | denotes | CAK |
| T91 | 318-321 | http://purl.obolibrary.org/obo/PR_Q08345 | denotes | CAK |
| T92 | 318-321 | http://www.uniprot.org/uniprot/P54685 | denotes | CAK |
| T93 | 318-321 | http://purl.obolibrary.org/obo/PR_Q03147 | denotes | CAK |
| T94 | 328-331 | http://purl.obolibrary.org/obo/PR_P50613 | denotes | CAK |
| T95 | 328-331 | http://web.expasy.org/cellosaurus/CVCL_HE49 | denotes | CAK |
| T96 | 328-331 | http://purl.obolibrary.org/obo/PR_Q03146 | denotes | CAK |
| T97 | 328-331 | http://www.uniprot.org/uniprot/E2S064 | denotes | CAK |
| T98 | 328-331 | http://purl.obolibrary.org/obo/PR_000001445 | denotes | CAK |
| T99 | 328-331 | http://purl.obolibrary.org/obo/PR_000005265 | denotes | CAK |
| T100 | 328-331 | http://purl.obolibrary.org/obo/GO_0019912 | denotes | CAK |
| T101 | 328-331 | http://purl.obolibrary.org/obo/PR_Q08345 | denotes | CAK |
| T102 | 328-331 | http://www.uniprot.org/uniprot/P54685 | denotes | CAK |
| T103 | 328-331 | http://purl.obolibrary.org/obo/PR_Q03147 | denotes | CAK |
| T104 | 328-334 | http://www.uniprot.org/uniprot/P29620 | denotes | CAK R2 |
| T105 | 328-334 | http://www.uniprot.org/uniprot/A2Y4B6 | denotes | CAK R2 |
| T106 | 328-334 | CDKD;1 | denotes | CAK R2 |
| T107 | 333-334 | AMT1;3 | denotes | 2 |
| T108 | 340-344 | http://id.nlm.nih.gov/mesh/D012275 | denotes | rice |
| T109 | 340-344 | http://purl.bioontology.org/ontology/RXNORM/1311040 | denotes | rice |
| T110 | 340-344 | http://www.ncbi.nlm.nih.gov/taxonomy/4530 | denotes | rice |
| T111 | 386-389 | http://purl.obolibrary.org/obo/PR_Q9VVR1 | denotes | not |
| T112 | 386-389 | http://purl.obolibrary.org/obo/PR_000011409 | denotes | not |
| T113 | 386-389 | http://purl.obolibrary.org/obo/PR_P43354 | denotes | not |
| T114 | 386-389 | http://purl.obolibrary.org/obo/PR_000003944 | denotes | not |
| T115 | 386-389 | http://purl.obolibrary.org/obo/PR_Q5TIS6 | denotes | not |
| T116 | 386-389 | http://purl.obolibrary.org/obo/PR_Q92685 | denotes | not |
| T117 | 386-389 | http://purl.obolibrary.org/obo/PR_Q8K2A8 | denotes | not |
| T118 | 386-389 | http://purl.obolibrary.org/obo/PR_000011336 | denotes | not |
| T119 | 424-430 | http://purl.obolibrary.org/obo/SO_0000417 | denotes | domain |
| T120 | 432-435 | http://www.uniprot.org/uniprot/Q9HKT2 | denotes | CTD |
| T121 | 440-443 | http://purl.obolibrary.org/obo/GO_0005562 | denotes | RNA |
| T122 | 440-443 | http://purl.obolibrary.org/obo/PR_000023786 | denotes | RNA |
| T123 | 440-443 | http://purl.obolibrary.org/obo/SO_0000356 | denotes | RNA |
| T124 | 440-443 | http://purl.obolibrary.org/obo/CHEBI_33697 | denotes | RNA |
| T125 | 440-443 | http://purl.obolibrary.org/obo/PR_P21338 | denotes | RNA |
| T126 | 440-443 | http://id.nlm.nih.gov/mesh/D012313 | denotes | RNA |
| T127 | 440-454 | RPOTP | denotes | RNA polymerase |
| T128 | 440-454 | http://id.nlm.nih.gov/mesh/D012321 | denotes | RNA polymerase |
| T129 | 440-457 | http://id.nlm.nih.gov/mesh/D012319 | denotes | RNA polymerase II |
| T130 | 475-476 | AMT1;3 | denotes | 2 |
| T131 | 482-497 | http://id.nlm.nih.gov/mesh/D009687 | denotes | nuclear protein |
| T132 | 490-497 | http://purl.obolibrary.org/obo/CHEBI_11122 | denotes | protein |
| T133 | 490-497 | http://purl.obolibrary.org/obo/SO_0000104 | denotes | protein |
| T134 | 490-497 | http://purl.obolibrary.org/obo/PR_000000001 | denotes | protein |
| T135 | 490-497 | http://purl.obolibrary.org/obo/CHEBI_16541 | denotes | protein |
| T136 | 490-497 | http://purl.obolibrary.org/obo/GO_0003675 | denotes | protein |
| T137 | 490-497 | http://purl.obolibrary.org/obo/CHEBI_36080 | denotes | protein |
| T138 | 524-527 | http://purl.obolibrary.org/obo/PR_P49258 | denotes | and |
| T139 | 524-527 | http://www.ncbi.nlm.nih.gov/taxonomy/1481724 | denotes | and |
| T140 | 538-541 | http://www.uniprot.org/uniprot/Q9HKT2 | denotes | CTD |
| T141 | 538-548 | http://id.nlm.nih.gov/mesh/C060137 | denotes | CTD kinase |
| T142 | 538-557 | http://purl.obolibrary.org/obo/GO_0008353 | denotes | CTD kinase activity |
| T143 | 542-548 | http://id.nlm.nih.gov/mesh/D010770 | denotes | kinase |
| T144 | 542-557 | http://purl.obolibrary.org/obo/GO_0016301 | denotes | kinase activity |
| T145 | 561-568 | http://purl.obolibrary.org/obo/GO_0051320 | denotes | S-phase |
| T146 | 582-583 | AMT1;3 | denotes | 2 |
| T147 | 604-614 | http://purl.obolibrary.org/obo/SO_0000781 | denotes | transgenic |
| T148 | 636-643 | http://purl.obolibrary.org/obo/GO_0051320 | denotes | S-phase |
| T149 | 656-659 | http://purl.obolibrary.org/obo/PR_P49258 | denotes | and |
| T150 | 656-659 | http://www.ncbi.nlm.nih.gov/taxonomy/1481724 | denotes | and |
| T151 | 668-674 | http://purl.obolibrary.org/obo/GO_0040007 | denotes | growth |
| T152 | 704-710 | http://purl.obolibrary.org/obo/UBERON_0008338 | denotes | planta |
| T153 | 716-719 | http://www.uniprot.org/uniprot/Q9HKT2 | denotes | CTD |
| T154 | 716-726 | http://id.nlm.nih.gov/mesh/C060137 | denotes | CTD kinase |
| T155 | 716-735 | http://purl.obolibrary.org/obo/GO_0008353 | denotes | CTD kinase activity |
| T156 | 720-726 | http://id.nlm.nih.gov/mesh/D010770 | denotes | kinase |
| T157 | 720-735 | http://purl.obolibrary.org/obo/GO_0016301 | denotes | kinase activity |
| T158 | 740-741 | AMT1;3 | denotes | 2 |
| T159 | 742-745 | http://purl.obolibrary.org/obo/PR_000017371 | denotes | was |
| T160 | 742-745 | http://purl.obolibrary.org/obo/PR_P42768 | denotes | was |
| T161 | 742-745 | http://purl.obolibrary.org/obo/PR_P70315 | denotes | was |
| T162 | 742-745 | http://id.nlm.nih.gov/mesh/D014923 | denotes | was |
| T163 | 759-765 | http://purl.obolibrary.org/obo/GO_0040007 | denotes | growth |
| T164 | 776-782 | http://purl.obolibrary.org/obo/SO_0000418 | denotes | signal |
| T165 | 776-782 | http://purl.obolibrary.org/obo/SO_0000725 | denotes | signal |
| T166 | 785-786 | AMT1;3 | denotes | 2 |
| T167 | 787-797 | http://purl.obolibrary.org/obo/GO_0065007 | denotes | regulation |
| T168 | 810-813 | http://web.expasy.org/cellosaurus/CVCL_E773 | denotes | may |
| T169 | 827-832 | http://id.nlm.nih.gov/mesh/D010944 | denotes | plant |
| T170 | 896-900 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T171 | 896-900 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell |
| T172 | 896-914 | http://purl.obolibrary.org/obo/GO_0008283 | denotes | cell proliferation |
| T173 | 901-914 | http://purl.obolibrary.org/obo/UBERON_2000098 | denotes | proliferation |
| T174 | 927-931 | http://www.uniprot.org/uniprot/A7MBU6 | denotes | to a |
pqqtest_sentence
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| M_0 | 636-655 | cand:PO:0001014-first mitotic division stage | denotes | S-phase progression |
| M_1 | 636-655 | cand:TO:0000730-mitotic cell cycle trait | denotes | S-phase progression |
| M_2 | 636-655 | cand:PO:0001015-second mitotic division stage | denotes | S-phase progression |
| M_3 | 636-655 | cand:PO:0007058-endoreduplication stage | denotes | S-phase progression |
| M_4 | 636-655 | cand:funRiceGene:10-cell cycle | denotes | S-phase progression |
| M_5 | 636-655 | cand:TO:0000729-meiotic cell cycle trait | denotes | S-phase progression |
| M_6 | 636-655 | cand:TO:0000134-alkali digestion | denotes | S-phase progression |
| M_7 | 636-655 | cand:PECO:0007393-sub-sahara region | denotes | S-phase progression |
| M_8 | 636-655 | cand:funRiceGene:504-biomass production | denotes | S-phase progression |
| M_9 | 636-655 | cand:PO:0025603-plant resin | denotes | S-phase progression |
| M_10 | 636-655 | cand:TO:0020069-spike exsertion | denotes | S-phase progression |
| M_11 | 827-860 | cand:funRiceGene:290-plant defense signaling | denotes | plant-specific adaptive mechanism |
| M_12 | 827-860 | cand:PO:0025124-multicellular plant gametangium | denotes | plant-specific adaptive mechanism |
| M_13 | 827-860 | cand:funRiceGene:57-plant architecture | denotes | plant-specific adaptive mechanism |
| M_14 | 827-860 | cand:PO:0025521-unicellular plant gametangium | denotes | plant-specific adaptive mechanism |
| M_15 | 827-860 | cand:WTO:0000001-plant property | denotes | plant-specific adaptive mechanism |
| M_16 | 827-860 | cand:PO:0009012-plant structure development stage | denotes | plant-specific adaptive mechanism |
| M_17 | 827-860 | cand:TO:0000239-plant genetic trait unknown | denotes | plant-specific adaptive mechanism |
| M_18 | 827-860 | cand:PO:0006063-plant ovary epidermis | denotes | plant-specific adaptive mechanism |
| M_19 | 827-860 | cand:TO:0000461-basic vegetative phase | denotes | plant-specific adaptive mechanism |
| M_20 | 827-860 | cand:PO:0028001-plant life cycle phase | denotes | plant-specific adaptive mechanism |
| M_21 | 827-860 | cand:TO:0000562-specific leaf area | denotes | plant-specific adaptive mechanism |
| M_22 | 581-583 | GeneID:RAPID:Os02g0777400|Os05g0392300|Os06g0130100MSUID:LOC_Os06g03970|LOC_Os02g53720|LOC_Os05g32600GraID:GR:0060742 | denotes | R2 |
| M_23 | 784-786 | GeneID:RAPID:Os02g0777400|Os05g0392300|Os06g0130100MSUID:LOC_Os06g03970|LOC_Os02g53720|LOC_Os05g32600GraID:GR:0060742 | denotes | R2 |
| T23431 | 26-32 | funRiceGene:512 | denotes | kinase |
| T21599 | 44-50 | funRiceGene:512 | denotes | kinase |
| T76059 | 310-316 | funRiceGene:512 | denotes | kinase |
| T45611 | 542-548 | funRiceGene:512 | denotes | kinase |
| T36517 | 720-726 | funRiceGene:512 | denotes | kinase |
| T69489 | 26-32 | funRiceGene:139 | denotes | kinase |
| T21554 | 44-50 | funRiceGene:139 | denotes | kinase |
| T67265 | 310-316 | funRiceGene:139 | denotes | kinase |
| T53998 | 542-548 | funRiceGene:139 | denotes | kinase |
| T561 | 720-726 | funRiceGene:139 | denotes | kinase |
| T8578 | 784-797 | xzyao:49 | denotes | R2 regulation |
| T17696 | 415-430 | xzyao:29048 | denotes | terminal domain |
| T31041 | 660-679 | xzyao:40436 | denotes | overall growth rate |
| T47238 | 683-699 | xzyao:22608 | denotes | suspension cells |
| T54301 | 668-674 | WTO:0000021, funRiceGene:221 | denotes | growth |
| T8640 | 759-765 | WTO:0000021, funRiceGene:221 | denotes | growth |
| T34107 | 147-168 | xzyao:15163 | denotes | eukaryotic cell cycle |
| T41025 | 64-83 | xzyao:38651 | denotes | S-phase progression |
| T89098 | 636-655 | xzyao:38651 | denotes | S-phase progression |
| T38368 | 827-860 | xzyao:3525 | denotes | plant-specific adaptive mechanism |
| T48093 | 158-168 | funRiceGene:145, xzyao:5527 | denotes | cell cycle |
| T80600 | 660-674 | xzyao:20948 | denotes | overall growth |
| T89146 | 668-679 | funRiceGene:106, xzyao:18538 | denotes | growth rate |
| T21989 | 125-143 | xzyao:30199 | denotes | central components |
| M_24 | 896-914 | funRiceGene:357, xzyao:8154 | denotes | cell proliferation |
| M_25 | 158-179 | xzyao:31946 | denotes | cell cycle regulation |
| M_26 | 318-321 | hunflair:NA:Gene | denotes | CAK |
| M_27 | 328-331 | hunflair:NA:Gene | denotes | CAK |
| M_28 | 111-115 | hunflair:NA:Gene | denotes | CDKs |
| M_29 | 200-204 | hunflair:NA:Gene | denotes | CDKs |
| M_30 | 395-399 | hunflair:NA:Gene | denotes | CDKs |
| M_31 | 295-316 | hunflair:NA:Gene | denotes | CDK-activating kinase |
| M_32 | 85-109 | hunflair:NA:Gene | denotes | Cyclin-dependent kinases |
| M_33 | 328-334 | hunflair:NA:Gene | denotes | CAK R2 |
| M_34 | 538-548 | hunflair:NA:Gene | denotes | CTD kinase |
| M_35 | 716-726 | hunflair:NA:Gene | denotes | CTD kinase |
| M_36 | 440-457 | hunflair:NA:Gene | denotes | RNA polymerase II |
| M_37 | 51-53 | hunflair:NA:Gene | denotes | R2 |
| M_38 | 332-334 | hunflair:NA:Gene | denotes | R2 |
| M_39 | 474-476 | hunflair:NA:Gene | denotes | R2 |
| M_40 | 581-583 | hunflair:NA:Gene | denotes | R2 |
| M_41 | 739-741 | hunflair:NA:Gene | denotes | R2 |
| M_42 | 784-786 | hunflair:NA:Gene | denotes | R2 |
| M_43 | 9-53 | hunflair:NA:Gene | denotes | cyclin-dependent kinase-activating kinase R2 |
| M_44 | 4-8 | hunflair:NA:Species | denotes | rice |
| M_45 | 340-344 | hunflair:NA:Species | denotes | rice |
| M_46 | 220-229 | hunflair:NA:Chemical | denotes | threonine |
| M_47 | 362-366 | hunflair:NA:Gene | denotes | CAKs |
| M_48 | 220-229 | pubtator:MESH:C061951:Chemical | denotes | threonine |
| M_49 | 413-414 | pubtator:MESH:D002244:Chemical | denotes | C |
| M_50 | 4-8 | pubtator:4530:Species | denotes | rice |
| M_51 | 340-344 | pubtator:4530:Species | denotes | rice |
21k_plant_trait_mention
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| M_0 | 668-679 | funRiceGene:106, xzyao:5698 | denotes | growth rate |
| M_1 | 827-860 | xzyao:16056 | denotes | plant-specific adaptive mechanism |
| M_2 | 896-914 | funRiceGene:357, xzyao:10426 | denotes | cell proliferation |
| M_3 | 310-316 | funRiceGene:512 | denotes | kinase |
| M_4 | 542-548 | funRiceGene:512 | denotes | kinase |
| M_5 | 720-726 | funRiceGene:512 | denotes | kinase |
| M_6 | 660-679 | xzyao:10001 | denotes | overall growth rate |
| M_7 | 668-674 | WTO:0000021, funRiceGene:221 | denotes | growth |
| M_8 | 158-168 | funRiceGene:145, xzyao:8501 | denotes | cell cycle |
| M_9 | 310-316 | funRiceGene:139 | denotes | kinase |
| M_10 | 542-548 | funRiceGene:139 | denotes | kinase |
| M_11 | 720-726 | funRiceGene:139 | denotes | kinase |
| M_12 | 9-53 | hunflair:NA:Gene | denotes | cyclin-dependent kinase-activating kinase R2 |
| M_13 | 295-316 | hunflair:NA:Gene | denotes | CDK-activating kinase |
| M_14 | 440-457 | hunflair:NA:Gene | denotes | RNA polymerase II |
| M_15 | 4-8 | hunflair:NA:Species | denotes | rice |
| M_16 | 340-344 | hunflair:NA:Species | denotes | rice |
| M_17 | 362-366 | hunflair:NA:Gene | denotes | CAKs |
| M_18 | 328-334 | hunflair:NA:Gene | denotes | CAK R2 |
| M_19 | 220-229 | hunflair:NA:Chemical | denotes | threonine |
| M_20 | 111-115 | hunflair:NA:Gene | denotes | CDKs |
| M_21 | 200-204 | hunflair:NA:Gene | denotes | CDKs |
| M_22 | 395-399 | hunflair:NA:Gene | denotes | CDKs |
| M_23 | 85-109 | hunflair:NA:Gene | denotes | Cyclin-dependent kinases |
| M_24 | 51-53 | hunflair:NA:Gene | denotes | R2 |
| M_25 | 332-334 | hunflair:NA:Gene | denotes | R2 |
| M_26 | 474-476 | hunflair:NA:Gene | denotes | R2 |
| M_27 | 581-583 | hunflair:NA:Gene | denotes | R2 |
| M_28 | 739-741 | hunflair:NA:Gene | denotes | R2 |
| M_29 | 784-786 | hunflair:NA:Gene | denotes | R2 |
| M_30 | 318-321 | hunflair:NA:Gene | denotes | CAK |
| M_31 | 328-331 | hunflair:NA:Gene | denotes | CAK |
| M_32 | 538-548 | hunflair:NA:Gene | denotes | CTD kinase |
| M_33 | 716-726 | hunflair:NA:Gene | denotes | CTD kinase |
| M_34 | 413-414 | pubtator:MESH:D002244:Chemical | denotes | C |
| M_35 | 4-8 | pubtator:4530:Species | denotes | rice |
| M_36 | 340-344 | pubtator:4530:Species | denotes | rice |
| M_37 | 220-229 | pubtator:MESH:C061951:Chemical | denotes | threonine |
OryzaGP_2021_v2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 51-53 | http://identifiers.org/oryzabase.gene/447 | denotes | R2 |
| T2 | 51-53 | http://identifiers.org/oryzabase.gene/13293 | denotes | R2 |
| T3 | 328-334 | http://identifiers.org/oryzabase.gene/13293 | denotes | CAK R2 |
| T4 | 474-476 | http://identifiers.org/oryzabase.gene/447 | denotes | R2 |
| T5 | 474-476 | http://identifiers.org/oryzabase.gene/13293 | denotes | R2 |
| T6 | 581-583 | http://identifiers.org/oryzabase.gene/447 | denotes | R2 |
| T7 | 581-583 | http://identifiers.org/oryzabase.gene/13293 | denotes | R2 |
| T8 | 739-741 | http://identifiers.org/oryzabase.gene/447 | denotes | R2 |
| T9 | 739-741 | http://identifiers.org/oryzabase.gene/13293 | denotes | R2 |
| T10 | 784-786 | http://identifiers.org/oryzabase.gene/447 | denotes | R2 |
| T11 | 784-786 | http://identifiers.org/oryzabase.gene/13293 | denotes | R2 |
| T90912 | 51-53 | http://identifiers.org/rapdb.locus/Os05g0392300 | denotes | R2 |
| T72536 | 328-334 | http://identifiers.org/rapdb.locus/Os05g0392300 | denotes | CAK R2 |
| T40989 | 474-476 | http://identifiers.org/rapdb.locus/Os05g0392300 | denotes | R2 |
| T9604 | 581-583 | http://identifiers.org/rapdb.locus/Os05g0392300 | denotes | R2 |
| T26791 | 739-741 | http://identifiers.org/rapdb.locus/Os05g0392300 | denotes | R2 |
| T15040 | 784-786 | http://identifiers.org/rapdb.locus/Os05g0392300 | denotes | R2 |
OryzaGP_2022
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 440-454 | http://identifiers.org/oryzabase.gene/3068 | denotes | RNA polymerase |
PMID_GLOBAL
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-84 | Sentence | denotes | The rice cyclin-dependent kinase-activating kinase R2 regulates S-phase progression. |
| T2 | 85-180 | Sentence | denotes | Cyclin-dependent kinases (CDKs) are the central components of eukaryotic cell cycle regulation. |
| T3 | 181-323 | Sentence | denotes | Phosphorylation of CDKs at a conserved threonine residue is required for their full activity and is mediated by a CDK-activating kinase (CAK). |
| T4 | 324-458 | Sentence | denotes | The CAK R2 from rice belongs to those CAKs that phosphorylate not only CDKs but also the C-terminal domain (CTD) of RNA polymerase II. |
| T5 | 459-569 | Sentence | denotes | We showed that R2 is a nuclear protein with increased expression and increased CTD kinase activity in S-phase. |
| T6 | 570-700 | Sentence | denotes | Increasing R2 abundance through a transgenic approach accelerated S-phase progression and overall growth rate in suspension cells. |
| T7 | 701-783 | Sentence | denotes | In planta, the CTD kinase activity of R2 was induced by a growth-promoting signal. |
| T8 | 784-953 | Sentence | denotes | R2 regulation, therefore, may constitute a plant-specific adaptive mechanism that is used to adjust the rate of cell proliferation in response to a changing environment. |
OryzaGP_2021_FLAIR
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| M_0 | 328-334 | hunflair:NA:Gene | denotes | CAK R2 |
| M_1 | 295-316 | hunflair:NA:Gene | denotes | CDK-activating kinase |
| M_2 | 4-8 | hunflair:NA:Species | denotes | rice |
| M_3 | 340-344 | hunflair:NA:Species | denotes | rice |
| M_4 | 220-229 | hunflair:NA:Chemical | denotes | threonine |
| M_5 | 85-109 | hunflair:NA:Gene | denotes | Cyclin-dependent kinases |
| M_6 | 318-321 | hunflair:NA:Gene | denotes | CAK |
| M_7 | 328-331 | hunflair:NA:Gene | denotes | CAK |
| M_8 | 111-115 | hunflair:NA:Gene | denotes | CDKs |
| M_9 | 200-204 | hunflair:NA:Gene | denotes | CDKs |
| M_10 | 395-399 | hunflair:NA:Gene | denotes | CDKs |
| M_11 | 440-457 | hunflair:NA:Gene | denotes | RNA polymerase II |
| M_12 | 9-53 | hunflair:NA:Gene | denotes | cyclin-dependent kinase-activating kinase R2 |
| M_13 | 538-548 | hunflair:NA:Gene | denotes | CTD kinase |
| M_14 | 716-726 | hunflair:NA:Gene | denotes | CTD kinase |
| M_15 | 362-366 | hunflair:NA:Gene | denotes | CAKs |
| M_16 | 51-53 | hunflair:NA:Gene | denotes | R2 |
| M_17 | 332-334 | hunflair:NA:Gene | denotes | R2 |
| M_18 | 474-476 | hunflair:NA:Gene | denotes | R2 |
| M_19 | 581-583 | hunflair:NA:Gene | denotes | R2 |
| M_20 | 739-741 | hunflair:NA:Gene | denotes | R2 |
| M_21 | 784-786 | hunflair:NA:Gene | denotes | R2 |
OryzaGP_2021
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 51-53 | http://identifiers.org/oryzabase.gene/13293 | denotes | R2 |
| T2 | 328-334 | http://identifiers.org/oryzabase.gene/13293 | denotes | CAK R2 |
| T3 | 440-454 | http://identifiers.org/oryzabase.gene/3068 | denotes | RNA polymerase |
| T4 | 474-476 | http://identifiers.org/oryzabase.gene/447 | denotes | R2 |
| T5 | 474-476 | http://identifiers.org/oryzabase.gene/13293 | denotes | R2 |
| T6 | 581-583 | http://identifiers.org/oryzabase.gene/447 | denotes | R2 |
| T7 | 581-583 | http://identifiers.org/oryzabase.gene/13293 | denotes | R2 |
| T8 | 739-741 | http://identifiers.org/oryzabase.gene/447 | denotes | R2 |
| T9 | 739-741 | http://identifiers.org/oryzabase.gene/13293 | denotes | R2 |
| T10 | 784-786 | http://identifiers.org/oryzabase.gene/447 | denotes | R2 |
| T11 | 784-786 | http://identifiers.org/oryzabase.gene/13293 | denotes | R2 |
| T57503 | 51-53 | http://identifiers.org/ricegap/LOC_Os05g32600 | denotes | R2 |
| T24127 | 85-91 | http://identifiers.org/ricegap/LOC_Os02g56130 | denotes | Cyclin |
| T93347 | 328-334 | http://identifiers.org/ricegap/LOC_Os05g32600 | denotes | CAK R2 |
| T62788 | 440-454 | http://identifiers.org/ricegap/LOC_Os06g44230 | denotes | RNA polymerase |
| T8687 | 474-476 | http://identifiers.org/ricegap/LOC_Os05g32600 | denotes | R2 |
| T99858 | 581-583 | http://identifiers.org/ricegap/LOC_Os05g32600 | denotes | R2 |
| T53519 | 739-741 | http://identifiers.org/ricegap/LOC_Os05g32600 | denotes | R2 |
| T89734 | 784-786 | http://identifiers.org/ricegap/LOC_Os05g32600 | denotes | R2 |
| T71259 | 51-53 | http://identifiers.org/rapdb.locus/Os05g0392300 | denotes | R2 |
| T1438 | 85-91 | http://identifiers.org/rapdb.locus/Os02g0805200 | denotes | Cyclin |
| T1271 | 328-334 | http://identifiers.org/rapdb.locus/Os05g0392300 | denotes | CAK R2 |
| T2928 | 440-454 | http://identifiers.org/rapdb.locus/Os06g0652000 | denotes | RNA polymerase |
| T7648 | 474-476 | http://identifiers.org/rapdb.locus/Os05g0392300 | denotes | R2 |
| T17118 | 581-583 | http://identifiers.org/rapdb.locus/Os05g0392300 | denotes | R2 |
| T18372 | 739-741 | http://identifiers.org/rapdb.locus/Os05g0392300 | denotes | R2 |
| T36705 | 784-786 | http://identifiers.org/rapdb.locus/Os05g0392300 | denotes | R2 |
| T97341 | 9-15 | http://identifiers.org/uniprot/P17070 | denotes | cyclin |
| T51764 | 51-53 | http://identifiers.org/uniprot/P29620 | denotes | R2 |
| T36431 | 328-334 | http://identifiers.org/uniprot/P29620 | denotes | CAK R2 |
| T63383 | 440-454 | http://identifiers.org/uniprot/Q84LK5 | denotes | RNA polymerase |
| T21223 | 474-476 | http://identifiers.org/uniprot/P29620 | denotes | R2 |
| T27040 | 581-583 | http://identifiers.org/uniprot/P29620 | denotes | R2 |
| T58955 | 739-741 | http://identifiers.org/uniprot/P29620 | denotes | R2 |
| T85982 | 784-786 | http://identifiers.org/uniprot/P29620 | denotes | R2 |
| M_0 | 328-334 | hunflair:NA:Gene | denotes | CAK R2 |
| M_1 | 295-316 | hunflair:NA:Gene | denotes | CDK-activating kinase |
| M_2 | 4-8 | hunflair:NA:Species | denotes | rice |
| M_3 | 340-344 | hunflair:NA:Species | denotes | rice |
| M_4 | 220-229 | hunflair:NA:Chemical | denotes | threonine |
| M_5 | 85-109 | hunflair:NA:Gene | denotes | Cyclin-dependent kinases |
| M_6 | 318-321 | hunflair:NA:Gene | denotes | CAK |
| M_7 | 328-331 | hunflair:NA:Gene | denotes | CAK |
| M_8 | 111-115 | hunflair:NA:Gene | denotes | CDKs |
| M_9 | 200-204 | hunflair:NA:Gene | denotes | CDKs |
| M_10 | 395-399 | hunflair:NA:Gene | denotes | CDKs |
| M_11 | 440-457 | hunflair:NA:Gene | denotes | RNA polymerase II |
| M_12 | 9-53 | hunflair:NA:Gene | denotes | cyclin-dependent kinase-activating kinase R2 |
| M_13 | 538-548 | hunflair:NA:Gene | denotes | CTD kinase |
| M_14 | 716-726 | hunflair:NA:Gene | denotes | CTD kinase |
| M_15 | 362-366 | hunflair:NA:Gene | denotes | CAKs |
| M_16 | 51-53 | hunflair:NA:Gene | denotes | R2 |
| M_17 | 332-334 | hunflair:NA:Gene | denotes | R2 |
| M_18 | 474-476 | hunflair:NA:Gene | denotes | R2 |
| M_19 | 581-583 | hunflair:NA:Gene | denotes | R2 |
| M_20 | 739-741 | hunflair:NA:Gene | denotes | R2 |
| M_21 | 784-786 | hunflair:NA:Gene | denotes | R2 |
Oryza_sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-84 | Sentence | denotes | The rice cyclin-dependent kinase-activating kinase R2 regulates S-phase progression. |
| T2 | 85-180 | Sentence | denotes | Cyclin-dependent kinases (CDKs) are the central components of eukaryotic cell cycle regulation. |
| T3 | 181-323 | Sentence | denotes | Phosphorylation of CDKs at a conserved threonine residue is required for their full activity and is mediated by a CDK-activating kinase (CAK). |
| T4 | 324-458 | Sentence | denotes | The CAK R2 from rice belongs to those CAKs that phosphorylate not only CDKs but also the C-terminal domain (CTD) of RNA polymerase II. |
| T5 | 459-569 | Sentence | denotes | We showed that R2 is a nuclear protein with increased expression and increased CTD kinase activity in S-phase. |
| T6 | 570-700 | Sentence | denotes | Increasing R2 abundance through a transgenic approach accelerated S-phase progression and overall growth rate in suspension cells. |
| T7 | 701-783 | Sentence | denotes | In planta, the CTD kinase activity of R2 was induced by a growth-promoting signal. |
| T8 | 784-953 | Sentence | denotes | R2 regulation, therefore, may constitute a plant-specific adaptive mechanism that is used to adjust the rate of cell proliferation in response to a changing environment. |