> top > docs > PubMed:11677243 > annotations

PubMed:11677243 JSONTXT

Annnotations TAB JSON ListView MergeView

ggdb-test

Id Subject Object Predicate Lexical cue
T1 37-68 https://acgg.asia/db/ggdb/info/gg070 denotes 1 beta1,3-galactosyltransferase
T2 374-379 https://acgg.asia/db/ggdb/info/gg184 denotes Gal-T
T3 434-439 https://acgg.asia/db/ggdb/info/gg184 denotes Gal-T
T4 561-566 https://acgg.asia/db/ggdb/info/gg184 denotes Gal-T
T5 654-659 https://acgg.asia/db/ggdb/info/gg184 denotes Gal-T
T6 799-804 https://acgg.asia/db/ggdb/info/gg184 denotes Gal-T
T7 996-1001 https://acgg.asia/db/ggdb/info/gg184 denotes Gal-T
T8 1254-1259 https://acgg.asia/db/ggdb/info/gg184 denotes Gal-T
T9 1531-1536 https://acgg.asia/db/ggdb/info/gg184 denotes Gal-T

GlyCosmos6-Glycan-Motif-Image

Id Subject Object Predicate Lexical cue image
T1 32-38 Glycan_Motif denotes core 1 https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00031MO
T2 81-87 Glycan_Motif denotes core 1 https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00031MO
T3 246-252 Glycan_Motif denotes Core 1 https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00031MO
T4 325-331 Glycan_Motif denotes core 1 https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00031MO
T5 361-367 Glycan_Motif denotes core 1 https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00031MO
T6 421-427 Glycan_Motif denotes core 1 https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00031MO
T7 548-554 Glycan_Motif denotes core 1 https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00031MO
T8 641-647 Glycan_Motif denotes core 1 https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00031MO
T9 786-792 Glycan_Motif denotes core 1 https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00031MO
T10 983-989 Glycan_Motif denotes core 1 https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00031MO
T11 1028-1037 Glycan_Motif denotes galactose https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G68158BT|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G65889KE
T13 1167-1173 Glycan_Motif denotes core 1 https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00031MO
T14 1241-1247 Glycan_Motif denotes core 1 https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00031MO
T15 1518-1524 Glycan_Motif denotes core 1 https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00031MO

GGDB-2020

Id Subject Object Predicate Lexical cue
T1 37-68 https://acgg.asia/db/ggdb/info/gg070 denotes 1 beta1,3-galactosyltransferase
T2 374-379 https://acgg.asia/db/ggdb/info/gg184 denotes Gal-T
T3 434-439 https://acgg.asia/db/ggdb/info/gg184 denotes Gal-T
T4 561-566 https://acgg.asia/db/ggdb/info/gg184 denotes Gal-T
T5 654-659 https://acgg.asia/db/ggdb/info/gg184 denotes Gal-T
T6 799-804 https://acgg.asia/db/ggdb/info/gg184 denotes Gal-T
T7 996-1001 https://acgg.asia/db/ggdb/info/gg184 denotes Gal-T
T8 1254-1259 https://acgg.asia/db/ggdb/info/gg184 denotes Gal-T
T9 1531-1536 https://acgg.asia/db/ggdb/info/gg184 denotes Gal-T

sentences

Id Subject Object Predicate Lexical cue
T1 0-69 Sentence denotes Cloning and expression of human core 1 beta1,3-galactosyltransferase.
T2 70-245 Sentence denotes The common core 1 O-glycan structure Galbeta1--> 3GalNAc-R is the precursor for many extended mucin-type O-glycan structures in animal cell surface and secreted glycoproteins.
T3 246-381 Sentence denotes Core 1 is synthesized by the transfer of Gal from UDP-Gal to GalNAcalpha1-R by core 1 beta3-galactosyltransferase (core 1 beta3-Gal-T).
T4 382-461 Sentence denotes Amino acid sequences from purified rat core 1 beta3-Gal-T (Ju, T., Cummings, R.
T5 462-482 Sentence denotes D., and Canfield, W.
T6 483-495 Sentence denotes M. (2002) J.
T7 496-501 Sentence denotes Biol.
T8 502-507 Sentence denotes Chem.
T9 508-624 Sentence denotes 277, 169-177) were used to identify the core 1 beta3-Gal-T sequences in the human expressed sequence tag data bases.
T10 625-781 Sentence denotes A 1794-bp human core 1 beta3-Gal-T cDNA sequence was determined by sequencing the expressed sequence tag and performing 5'-rapid amplification of cDNA ends.
T11 782-861 Sentence denotes The core 1 beta3-Gal-T predicts a 363-amino acid type II transmembrane protein.
T12 862-1184 Sentence denotes Expression of both the full-length and epitope-tagged soluble forms of the putative enzyme in human 293T cells generated core 1 beta3-Gal-T activity that transferred galactose from UDP-Gal to GalNAcalpha1-O-phenyl, and a synthetic glycopeptide with Thr-linked GalNAc and the product was shown to have the core 1 structure.
T13 1185-1329 Sentence denotes Northern analysis demonstrated widespread expression of core 1 beta3-Gal-T in tissues with a predominance in kidney, heart, placenta, and liver.
T14 1330-1513 Sentence denotes Highly homologous cDNAs were identified and cloned from rat, mouse, Drosophila melanogaster, and Caenorhabditis elegans, suggesting that the enzyme is widely distributed in metazoans.
T15 1514-1749 Sentence denotes The core 1 beta3-Gal-T sequence has minimal homology with conserved sequences found in previously described beta3-galactosyltransferases, suggesting this enzyme is only distantly related to the known beta3-galactosyltransferase family.

GlyCosmos6-Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T1 32-38 https://glytoucan.org/Structures/Glycans/G00031MO denotes core 1
T2 81-87 https://glytoucan.org/Structures/Glycans/G00031MO denotes core 1
T3 246-252 https://glytoucan.org/Structures/Glycans/G00031MO denotes Core 1
T4 325-331 https://glytoucan.org/Structures/Glycans/G00031MO denotes core 1
T5 361-367 https://glytoucan.org/Structures/Glycans/G00031MO denotes core 1
T6 421-427 https://glytoucan.org/Structures/Glycans/G00031MO denotes core 1
T7 548-554 https://glytoucan.org/Structures/Glycans/G00031MO denotes core 1
T8 641-647 https://glytoucan.org/Structures/Glycans/G00031MO denotes core 1
T9 786-792 https://glytoucan.org/Structures/Glycans/G00031MO denotes core 1
T10 983-989 https://glytoucan.org/Structures/Glycans/G00031MO denotes core 1
T11 1028-1037 https://glytoucan.org/Structures/Glycans/G65889KE denotes galactose
T12 1028-1037 https://glytoucan.org/Structures/Glycans/G68158BT denotes galactose
T13 1167-1173 https://glytoucan.org/Structures/Glycans/G00031MO denotes core 1
T14 1241-1247 https://glytoucan.org/Structures/Glycans/G00031MO denotes core 1
T15 1518-1524 https://glytoucan.org/Structures/Glycans/G00031MO denotes core 1

Glycosmos6-MAT

Id Subject Object Predicate Lexical cue
T1 1294-1300 http://purl.obolibrary.org/obo/MAT_0000119 denotes kidney
T2 1302-1307 http://purl.obolibrary.org/obo/MAT_0000036 denotes heart
T3 1309-1317 http://purl.obolibrary.org/obo/MAT_0000279 denotes placenta
T4 1323-1328 http://purl.obolibrary.org/obo/MAT_0000097 denotes liver

bionlp-st-pc-2013-training

Id Subject Object Predicate Lexical cue
T1 32-68 Gene_or_gene_product denotes core 1 beta1,3-galactosyltransferase
T2 81-96 Simple_chemical denotes core 1 O-glycan
T3 107-128 Simple_chemical denotes Galbeta1--> 3GalNAc-R
T4 175-183 Simple_chemical denotes O-glycan
T5 205-217 Cellular_component denotes cell surface
T6 246-252 Simple_chemical denotes Core 1
T7 287-290 Simple_chemical denotes Gal
T8 296-303 Simple_chemical denotes UDP-Gal
T9 307-321 Simple_chemical denotes GalNAcalpha1-R
T10 325-359 Gene_or_gene_product denotes core 1 beta3-galactosyltransferase
T11 361-379 Gene_or_gene_product denotes core 1 beta3-Gal-T
T12 421-439 Gene_or_gene_product denotes core 1 beta3-Gal-T
T13 548-566 Gene_or_gene_product denotes core 1 beta3-Gal-T
T14 641-659 Gene_or_gene_product denotes core 1 beta3-Gal-T
T15 786-804 Gene_or_gene_product denotes core 1 beta3-Gal-T
T16 839-852 Cellular_component denotes transmembrane
T17 983-1001 Gene_or_gene_product denotes core 1 beta3-Gal-T
T18 1028-1037 Simple_chemical denotes galactose
T19 1043-1050 Simple_chemical denotes UDP-Gal
T20 1054-1075 Simple_chemical denotes GalNAcalpha1-O-phenyl
T21 1111-1114 Simple_chemical denotes Thr
T22 1122-1128 Simple_chemical denotes GalNAc
T23 1167-1173 Simple_chemical denotes core 1
T24 1241-1259 Gene_or_gene_product denotes core 1 beta3-Gal-T
T25 1518-1536 Gene_or_gene_product denotes core 1 beta3-Gal-T
T26 1622-1650 Gene_or_gene_product denotes beta3-galactosyltransferases
T27 1714-1741 Gene_or_gene_product denotes beta3-galactosyltransferase

glycogenes

Id Subject Object Predicate Lexical cue
PD-GlycoGenes20190927-B_T1 37-68 https://acgg.asia/db/ggdb/info/gg070 denotes 1 beta1,3-galactosyltransferase
PD-GlycoGenes20190927-B_T2 374-379 https://acgg.asia/db/ggdb/info/gg184 denotes Gal-T
PD-GlycoGenes20190927-B_T3 434-439 https://acgg.asia/db/ggdb/info/gg184 denotes Gal-T
PD-GlycoGenes20190927-B_T4 561-566 https://acgg.asia/db/ggdb/info/gg184 denotes Gal-T
PD-GlycoGenes20190927-B_T5 654-659 https://acgg.asia/db/ggdb/info/gg184 denotes Gal-T
PD-GlycoGenes20190927-B_T6 799-804 https://acgg.asia/db/ggdb/info/gg184 denotes Gal-T
PD-GlycoGenes20190927-B_T7 836-838 https://acgg.asia/db/ggdb/info/gg111 denotes II
PD-GlycoGenes20190927-B_T8 996-1001 https://acgg.asia/db/ggdb/info/gg184 denotes Gal-T
PD-GlycoGenes20190927-B_T9 1254-1259 https://acgg.asia/db/ggdb/info/gg184 denotes Gal-T
PD-GlycoGenes20190927-B_T10 1531-1536 https://acgg.asia/db/ggdb/info/gg184 denotes Gal-T
PD-GlycoGenes20190927-B_T11 1546-1549 https://acgg.asia/db/ggdb/info/gg135 denotes has

GlyCosmos15-Glycan

Id Subject Object Predicate Lexical cue image
T1 32-38 Glycan denotes core 1
T2 81-87 Glycan denotes core 1
T3 246-252 Glycan denotes Core 1
T4 325-331 Glycan denotes core 1
T5 361-367 Glycan denotes core 1
T6 421-427 Glycan denotes core 1
T7 548-554 Glycan denotes core 1
T8 641-647 Glycan denotes core 1
T9 786-792 Glycan denotes core 1
T10 983-989 Glycan denotes core 1
T11 1122-1128 Glycan denotes GalNAc
T12 1167-1173 Glycan denotes core 1
T13 1241-1247 Glycan denotes core 1
T14 1518-1524 Glycan denotes core 1

Anatomy-MAT

Id Subject Object Predicate Lexical cue mat_id
T1 1294-1300 Body_part denotes kidney http://purl.obolibrary.org/obo/MAT_0000119
T2 1302-1307 Body_part denotes heart http://purl.obolibrary.org/obo/MAT_0000036
T3 1309-1317 Body_part denotes placenta http://purl.obolibrary.org/obo/MAT_0000279
T4 1323-1328 Body_part denotes liver http://purl.obolibrary.org/obo/MAT_0000097

Glycan-GlyCosmos

Id Subject Object Predicate Lexical cue image
T1 32-38 Glycan denotes core 1 https://api.glycosmos.org/wurcs2image/latest/png/binary/G00031MO
T2 81-87 Glycan denotes core 1 https://api.glycosmos.org/wurcs2image/latest/png/binary/G00031MO
T3 325-331 Glycan denotes core 1 https://api.glycosmos.org/wurcs2image/latest/png/binary/G00031MO
T4 361-367 Glycan denotes core 1 https://api.glycosmos.org/wurcs2image/latest/png/binary/G00031MO
T5 421-427 Glycan denotes core 1 https://api.glycosmos.org/wurcs2image/latest/png/binary/G00031MO
T6 548-554 Glycan denotes core 1 https://api.glycosmos.org/wurcs2image/latest/png/binary/G00031MO
T7 641-647 Glycan denotes core 1 https://api.glycosmos.org/wurcs2image/latest/png/binary/G00031MO
T8 786-792 Glycan denotes core 1 https://api.glycosmos.org/wurcs2image/latest/png/binary/G00031MO
T9 983-989 Glycan denotes core 1 https://api.glycosmos.org/wurcs2image/latest/png/binary/G00031MO
T10 1122-1128 Glycan denotes GalNAc https://api.glycosmos.org/wurcs2image/latest/png/binary/G39738WL
T11 1167-1173 Glycan denotes core 1 https://api.glycosmos.org/wurcs2image/latest/png/binary/G00031MO
T12 1241-1247 Glycan denotes core 1 https://api.glycosmos.org/wurcs2image/latest/png/binary/G00031MO
T13 1518-1524 Glycan denotes core 1 https://api.glycosmos.org/wurcs2image/latest/png/binary/G00031MO

GlyCosmos15-NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 26-31 OrganismTaxon denotes human 9606
T2 417-420 OrganismTaxon denotes rat 10114|10116
T4 584-589 OrganismTaxon denotes human 9606
T5 635-640 OrganismTaxon denotes human 9606
T6 956-961 OrganismTaxon denotes human 9606
T7 1386-1389 OrganismTaxon denotes rat 10114|10116
T9 1391-1396 OrganismTaxon denotes mouse 10088|10090
T11 1398-1421 OrganismTaxon denotes Drosophila melanogaster 7227
T12 1427-1449 OrganismTaxon denotes Caenorhabditis elegans 6239

GlyCosmos15-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 839-852 Body_part denotes transmembrane http://purl.obolibrary.org/obo/GO_0016020
T2 1294-1300 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113
T3 1302-1307 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948|http://purl.obolibrary.org/obo/UBERON_0007100|http://purl.obolibrary.org/obo/UBERON_0015228|http://purl.obolibrary.org/obo/UBERON_0015230
T7 1309-1317 Body_part denotes placenta http://purl.obolibrary.org/obo/UBERON_0001987
T8 1323-1328 Body_part denotes liver http://purl.obolibrary.org/obo/UBERON_0002107

GlyCosmos15-Sentences

Id Subject Object Predicate Lexical cue
T1 0-69 Sentence denotes Cloning and expression of human core 1 beta1,3-galactosyltransferase.
T2 70-245 Sentence denotes The common core 1 O-glycan structure Galbeta1--> 3GalNAc-R is the precursor for many extended mucin-type O-glycan structures in animal cell surface and secreted glycoproteins.
T3 246-381 Sentence denotes Core 1 is synthesized by the transfer of Gal from UDP-Gal to GalNAcalpha1-R by core 1 beta3-galactosyltransferase (core 1 beta3-Gal-T).
T4 382-624 Sentence denotes Amino acid sequences from purified rat core 1 beta3-Gal-T (Ju, T., Cummings, R. D., and Canfield, W. M. (2002) J. Biol. Chem. 277, 169-177) were used to identify the core 1 beta3-Gal-T sequences in the human expressed sequence tag data bases.
T5 625-781 Sentence denotes A 1794-bp human core 1 beta3-Gal-T cDNA sequence was determined by sequencing the expressed sequence tag and performing 5'-rapid amplification of cDNA ends.
T6 782-861 Sentence denotes The core 1 beta3-Gal-T predicts a 363-amino acid type II transmembrane protein.
T7 862-1184 Sentence denotes Expression of both the full-length and epitope-tagged soluble forms of the putative enzyme in human 293T cells generated core 1 beta3-Gal-T activity that transferred galactose from UDP-Gal to GalNAcalpha1-O-phenyl, and a synthetic glycopeptide with Thr-linked GalNAc and the product was shown to have the core 1 structure.
T8 1185-1329 Sentence denotes Northern analysis demonstrated widespread expression of core 1 beta3-Gal-T in tissues with a predominance in kidney, heart, placenta, and liver.
T9 1330-1513 Sentence denotes Highly homologous cDNAs were identified and cloned from rat, mouse, Drosophila melanogaster, and Caenorhabditis elegans, suggesting that the enzyme is widely distributed in metazoans.
T10 1514-1749 Sentence denotes The core 1 beta3-Gal-T sequence has minimal homology with conserved sequences found in previously described beta3-galactosyltransferases, suggesting this enzyme is only distantly related to the known beta3-galactosyltransferase family.

GlyCosmos15-FMA

Id Subject Object Predicate Lexical cue db_id
T1 205-217 Body_part denotes cell surface FMA:67653
T2 374-379 Body_part denotes Gal-T FMA:62820
T3 434-439 Body_part denotes Gal-T FMA:62820
T4 561-566 Body_part denotes Gal-T FMA:62820
T5 654-659 Body_part denotes Gal-T FMA:62820
T6 799-804 Body_part denotes Gal-T FMA:62820
T7 996-1001 Body_part denotes Gal-T FMA:62820
T8 1254-1259 Body_part denotes Gal-T FMA:62820
T9 1263-1270 Body_part denotes tissues FMA:9637
T10 1294-1300 Body_part denotes kidney FMA:7203
T11 1302-1307 Body_part denotes heart FMA:7088
T12 1309-1317 Body_part denotes placenta FMA:0329329|FMA:63934
T14 1323-1328 Body_part denotes liver FMA:7197
T15 1531-1536 Body_part denotes Gal-T FMA:62820

GlyCosmos15-MAT

Id Subject Object Predicate Lexical cue mat_id
T1 1294-1300 Body_part denotes kidney http://purl.obolibrary.org/obo/MAT_0000119
T2 1302-1307 Body_part denotes heart http://purl.obolibrary.org/obo/MAT_0000036
T3 1309-1317 Body_part denotes placenta http://purl.obolibrary.org/obo/MAT_0000279
T4 1323-1328 Body_part denotes liver http://purl.obolibrary.org/obo/MAT_0000097

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 26-31 OrganismTaxon denotes human 9606
T2 417-420 OrganismTaxon denotes rat 10114|10116
T4 584-589 OrganismTaxon denotes human 9606
T5 635-640 OrganismTaxon denotes human 9606
T6 956-961 OrganismTaxon denotes human 9606
T7 1386-1389 OrganismTaxon denotes rat 10114|10116
T9 1391-1396 OrganismTaxon denotes mouse 10088|10090
T11 1398-1421 OrganismTaxon denotes Drosophila melanogaster 7227
T12 1427-1449 OrganismTaxon denotes Caenorhabditis elegans 6239

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 839-852 Body_part denotes transmembrane http://purl.obolibrary.org/obo/GO_0016020
T2 1294-1300 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113
T3 1302-1307 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948|http://purl.obolibrary.org/obo/UBERON_0007100|http://purl.obolibrary.org/obo/UBERON_0015228|http://purl.obolibrary.org/obo/UBERON_0015230
T7 1309-1317 Body_part denotes placenta http://purl.obolibrary.org/obo/UBERON_0001987
T8 1323-1328 Body_part denotes liver http://purl.obolibrary.org/obo/UBERON_0002107