PubMed:11551958
Annnotations
GGDB-2020
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 171-182 | https://acgg.asia/db/ggdb/info/gg074 | denotes | beta 3GalT6 |
| T2 | 459-469 | https://acgg.asia/db/ggdb/info/gg074 | denotes | beta3GalT6 |
| T3 | 714-724 | https://acgg.asia/db/ggdb/info/gg074 | denotes | beta3GalT6 |
| T4 | 1306-1316 | https://acgg.asia/db/ggdb/info/gg074 | denotes | beta3GalT6 |
ggdb-test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 171-182 | https://acgg.asia/db/ggdb/info/gg074 | denotes | beta 3GalT6 |
| T2 | 459-469 | https://acgg.asia/db/ggdb/info/gg074 | denotes | beta3GalT6 |
| T3 | 714-724 | https://acgg.asia/db/ggdb/info/gg074 | denotes | beta3GalT6 |
| T4 | 1306-1316 | https://acgg.asia/db/ggdb/info/gg074 | denotes | beta3GalT6 |
GlyCosmos6-Glycan-Motif-Image
| Id | Subject | Object | Predicate | Lexical cue | image |
|---|---|---|---|---|---|
| T1 | 1041-1050 | Glycan_Motif | denotes | galactose | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G68158BT|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G65889KE |
| T3 | 1060-1069 | Glycan_Motif | denotes | galactose | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G68158BT|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G65889KE |
| T5 | 1117-1126 | Glycan_Motif | denotes | galactose | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G68158BT|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G65889KE |
| T7 | 1222-1233 | Glycan_Motif | denotes | chondroitin | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G43702JT |
GlyCosmos6-Glycan-Motif-Structure
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 1041-1050 | https://glytoucan.org/Structures/Glycans/G65889KE | denotes | galactose |
| T2 | 1041-1050 | https://glytoucan.org/Structures/Glycans/G68158BT | denotes | galactose |
| T3 | 1060-1069 | https://glytoucan.org/Structures/Glycans/G65889KE | denotes | galactose |
| T4 | 1060-1069 | https://glytoucan.org/Structures/Glycans/G68158BT | denotes | galactose |
| T5 | 1117-1126 | https://glytoucan.org/Structures/Glycans/G65889KE | denotes | galactose |
| T6 | 1117-1126 | https://glytoucan.org/Structures/Glycans/G68158BT | denotes | galactose |
| T7 | 1222-1233 | https://glytoucan.org/Structures/Glycans/G43702JT | denotes | chondroitin |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-184 | Sentence | denotes | Biosynthesis of the linkage region of glycosaminoglycans: cloning and activity of galactosyltransferase II, the sixth member of the beta 1,3-galactosyltransferase family (beta 3GalT6). |
| T2 | 185-416 | Sentence | denotes | A family of five beta1,3-galactosyltransferases has been characterized that catalyze the formation of Galbeta1,3GlcNAcbeta and Galbeta1,3GalNAcbeta linkages present in glycoproteins and glycolipids (beta3GalT1, -2, -3, -4, and -5). |
| T3 | 417-515 | Sentence | denotes | We now report a new member of the family (beta3GalT6), involved in glycosaminoglycan biosynthesis. |
| T4 | 516-677 | Sentence | denotes | The human and mouse genes were located on chromosomes 1p36.3 and 4E2, respectively, and homologs are found in Drosophila melanogaster and Caenorhabditis elegans. |
| T5 | 678-790 | Sentence | denotes | Unlike other members of the family, beta3GalT6 showed a broad mRNA expression pattern by Northern blot analysis. |
| T6 | 791-1008 | Sentence | denotes | Although a high degree of homology across several subdomains exists among other members of the beta3-galactosyltransferase family, recombinant enzyme did not utilize glucosamine- or galactosamine-containing acceptors. |
| T7 | 1009-1135 | Sentence | denotes | Instead, the enzyme transferred galactose from UDP-galactose to acceptors containing a terminal beta-linked galactose residue. |
| T8 | 1136-1402 | Sentence | denotes | This product, Galbeta1,3Galbeta is found in the linkage region of heparan sulfate and chondroitin sulfate (GlcAbeta1,3Galbeta1,3Galbeta1,4Xylbeta-O-Ser), indicating that beta3GalT6 is the so-called galactosyltransferase II involved in glycosaminoglycan biosynthesis. |
| T9 | 1403-1515 | Sentence | denotes | Its identity was confirmed in vivo by siRNA-mediated inhibition of glycosaminoglycan synthesis in HeLa S3 cells. |
| T10 | 1516-1626 | Sentence | denotes | Its localization in the medial Golgi indicates that this is the major site for assembly of the linkage region. |
Glycosmos6-MAT
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 1540-1546 | http://purl.obolibrary.org/obo/MAT_0000490 | denotes | medial |
Glycosmos6-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 581-584 | http://www.glycoepitope.jp/epitopes/AN0611 | denotes | 4E2 |
| T2 | 1202-1217 | http://www.glycoepitope.jp/epitopes/EP0086 | denotes | heparan sulfate |
| T3 | 1222-1233 | http://www.glycoepitope.jp/epitopes/EP0081 | denotes | chondroitin |
glycogenes
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| PD-GlycoGenes20190927-B_T1 | 104-106 | https://acgg.asia/db/ggdb/info/gg111 | denotes | II |
| PD-GlycoGenes20190927-B_T2 | 171-182 | https://acgg.asia/db/ggdb/info/gg074 | denotes | beta 3GalT6 |
| PD-GlycoGenes20190927-B_T3 | 233-236 | https://acgg.asia/db/ggdb/info/gg135 | denotes | has |
| PD-GlycoGenes20190927-B_T4 | 459-469 | https://acgg.asia/db/ggdb/info/gg074 | denotes | beta3GalT6 |
| PD-GlycoGenes20190927-B_T5 | 714-724 | https://acgg.asia/db/ggdb/info/gg074 | denotes | beta3GalT6 |
| PD-GlycoGenes20190927-B_T6 | 1306-1316 | https://acgg.asia/db/ggdb/info/gg074 | denotes | beta3GalT6 |
| PD-GlycoGenes20190927-B_T7 | 1356-1358 | https://acgg.asia/db/ggdb/info/gg111 | denotes | II |
HP-phenotype
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T1 | 1506-1508 | Phenotype | denotes | S3 | HP:0031658 |
Glycan-GlyCosmos
| Id | Subject | Object | Predicate | Lexical cue | image |
|---|---|---|---|---|---|
| T1 | 1222-1233 | Glycan | denotes | chondroitin | https://api.glycosmos.org/wurcs2image/latest/png/binary/G43702JT |
| T5 | 1202-1217 | Glycan | denotes | heparan sulfate | https://api.glycosmos.org/wurcs2image/latest/png/binary/G17927IW |
GlyCosmos-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue | glycoepitope_id |
|---|---|---|---|---|---|
| T1 | 581-584 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | 4E2 | http://www.glycoepitope.jp/epitopes/AN0611 |
| T2 | 1202-1217 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | heparan sulfate | http://www.glycoepitope.jp/epitopes/EP0086 |
| T3 | 1222-1233 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | chondroitin | http://www.glycoepitope.jp/epitopes/EP0081 |
GlyCosmos15-NCBITAXON
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| T1 | 520-525 | OrganismTaxon | denotes | human | 9606 |
| T2 | 530-535 | OrganismTaxon | denotes | mouse | 10088|10090 |
| T4 | 626-649 | OrganismTaxon | denotes | Drosophila melanogaster | 7227 |
| T5 | 654-676 | OrganismTaxon | denotes | Caenorhabditis elegans | 6239 |
GlyCosmos15-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 558-569 | Body_part | denotes | chromosomes | http://purl.obolibrary.org/obo/GO_0005694 |
| T2 | 1547-1552 | Body_part | denotes | Golgi | http://purl.obolibrary.org/obo/GO_0005794 |
GlyCosmos15-MAT
| Id | Subject | Object | Predicate | Lexical cue | mat_id |
|---|---|---|---|---|---|
| T1 | 1540-1546 | Body_part | denotes | medial | http://purl.obolibrary.org/obo/MAT_0000490 |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-184 | Sentence | denotes | Biosynthesis of the linkage region of glycosaminoglycans: cloning and activity of galactosyltransferase II, the sixth member of the beta 1,3-galactosyltransferase family (beta 3GalT6). |
| T2 | 185-416 | Sentence | denotes | A family of five beta1,3-galactosyltransferases has been characterized that catalyze the formation of Galbeta1,3GlcNAcbeta and Galbeta1,3GalNAcbeta linkages present in glycoproteins and glycolipids (beta3GalT1, -2, -3, -4, and -5). |
| T3 | 417-515 | Sentence | denotes | We now report a new member of the family (beta3GalT6), involved in glycosaminoglycan biosynthesis. |
| T4 | 516-677 | Sentence | denotes | The human and mouse genes were located on chromosomes 1p36.3 and 4E2, respectively, and homologs are found in Drosophila melanogaster and Caenorhabditis elegans. |
| T5 | 678-790 | Sentence | denotes | Unlike other members of the family, beta3GalT6 showed a broad mRNA expression pattern by Northern blot analysis. |
| T6 | 791-1008 | Sentence | denotes | Although a high degree of homology across several subdomains exists among other members of the beta3-galactosyltransferase family, recombinant enzyme did not utilize glucosamine- or galactosamine-containing acceptors. |
| T7 | 1009-1135 | Sentence | denotes | Instead, the enzyme transferred galactose from UDP-galactose to acceptors containing a terminal beta-linked galactose residue. |
| T8 | 1136-1402 | Sentence | denotes | This product, Galbeta1,3Galbeta is found in the linkage region of heparan sulfate and chondroitin sulfate (GlcAbeta1,3Galbeta1,3Galbeta1,4Xylbeta-O-Ser), indicating that beta3GalT6 is the so-called galactosyltransferase II involved in glycosaminoglycan biosynthesis. |
| T9 | 1403-1515 | Sentence | denotes | Its identity was confirmed in vivo by siRNA-mediated inhibition of glycosaminoglycan synthesis in HeLa S3 cells. |
| T10 | 1516-1626 | Sentence | denotes | Its localization in the medial Golgi indicates that this is the major site for assembly of the linkage region. |
GlyCosmos15-Sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-184 | Sentence | denotes | Biosynthesis of the linkage region of glycosaminoglycans: cloning and activity of galactosyltransferase II, the sixth member of the beta 1,3-galactosyltransferase family (beta 3GalT6). |
| T2 | 185-416 | Sentence | denotes | A family of five beta1,3-galactosyltransferases has been characterized that catalyze the formation of Galbeta1,3GlcNAcbeta and Galbeta1,3GalNAcbeta linkages present in glycoproteins and glycolipids (beta3GalT1, -2, -3, -4, and -5). |
| T3 | 417-515 | Sentence | denotes | We now report a new member of the family (beta3GalT6), involved in glycosaminoglycan biosynthesis. |
| T4 | 516-677 | Sentence | denotes | The human and mouse genes were located on chromosomes 1p36.3 and 4E2, respectively, and homologs are found in Drosophila melanogaster and Caenorhabditis elegans. |
| T5 | 678-790 | Sentence | denotes | Unlike other members of the family, beta3GalT6 showed a broad mRNA expression pattern by Northern blot analysis. |
| T6 | 791-1008 | Sentence | denotes | Although a high degree of homology across several subdomains exists among other members of the beta3-galactosyltransferase family, recombinant enzyme did not utilize glucosamine- or galactosamine-containing acceptors. |
| T7 | 1009-1135 | Sentence | denotes | Instead, the enzyme transferred galactose from UDP-galactose to acceptors containing a terminal beta-linked galactose residue. |
| T8 | 1136-1402 | Sentence | denotes | This product, Galbeta1,3Galbeta is found in the linkage region of heparan sulfate and chondroitin sulfate (GlcAbeta1,3Galbeta1,3Galbeta1,4Xylbeta-O-Ser), indicating that beta3GalT6 is the so-called galactosyltransferase II involved in glycosaminoglycan biosynthesis. |
| T9 | 1403-1515 | Sentence | denotes | Its identity was confirmed in vivo by siRNA-mediated inhibition of glycosaminoglycan synthesis in HeLa S3 cells. |
| T10 | 1516-1626 | Sentence | denotes | Its localization in the medial Golgi indicates that this is the major site for assembly of the linkage region. |
GlyCosmos15-Glycan
| Id | Subject | Object | Predicate | Lexical cue | image |
|---|---|---|---|---|---|
| T1 | 1222-1233 | Glycan | denotes | chondroitin | https://api.glycosmos.org/wurcs2image/latest/png/binary/G43702JT |
| T5 | 1202-1217 | Glycan | denotes | heparan sulfate | https://api.glycosmos.org/wurcs2image/latest/png/binary/G17927IW |
GlyCosmos15-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue | glycoepitope_id |
|---|---|---|---|---|---|
| T1 | 581-584 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | 4E2 | http://www.glycoepitope.jp/epitopes/AN0611 |
| T2 | 1202-1217 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | heparan sulfate | http://www.glycoepitope.jp/epitopes/EP0086 |
| T3 | 1222-1233 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | chondroitin | http://www.glycoepitope.jp/epitopes/EP0081 |
NCBITAXON
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| T1 | 520-525 | OrganismTaxon | denotes | human | 9606 |
| T2 | 530-535 | OrganismTaxon | denotes | mouse | 10088|10090 |
| T4 | 626-649 | OrganismTaxon | denotes | Drosophila melanogaster | 7227 |
| T5 | 654-676 | OrganismTaxon | denotes | Caenorhabditis elegans | 6239 |
Anatomy-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 558-569 | Body_part | denotes | chromosomes | http://purl.obolibrary.org/obo/GO_0005694 |
| T2 | 1547-1552 | Body_part | denotes | Golgi | http://purl.obolibrary.org/obo/GO_0005794 |
Anatomy-MAT
| Id | Subject | Object | Predicate | Lexical cue | mat_id |
|---|---|---|---|---|---|
| T1 | 1540-1546 | Body_part | denotes | medial | http://purl.obolibrary.org/obo/MAT_0000490 |