PubMed:11549765
Annnotations
Oryza-OGER
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 27-36 | http://purl.obolibrary.org/obo/SO_0000856 | denotes | conserved |
| T2 | 50-54 | http://id.nlm.nih.gov/mesh/D012275 | denotes | rice |
| T3 | 50-54 | http://purl.bioontology.org/ontology/RXNORM/1311040 | denotes | rice |
| T4 | 50-54 | http://www.ncbi.nlm.nih.gov/taxonomy/4530 | denotes | rice |
| T5 | 72-79 | http://purl.obolibrary.org/obo/CHEBI_11122 | denotes | protein |
| T6 | 72-79 | http://purl.obolibrary.org/obo/SO_0000104 | denotes | protein |
| T7 | 72-79 | http://purl.obolibrary.org/obo/PR_000000001 | denotes | protein |
| T8 | 72-79 | http://purl.obolibrary.org/obo/CHEBI_16541 | denotes | protein |
| T9 | 72-79 | http://purl.obolibrary.org/obo/GO_0003675 | denotes | protein |
| T10 | 72-79 | http://purl.obolibrary.org/obo/CHEBI_36080 | denotes | protein |
| T11 | 81-86 | OSH15 | denotes | OSH15 |
| T12 | 92-96 | http://id.nlm.nih.gov/mesh/D012275 | denotes | rice |
| T13 | 92-96 | http://purl.bioontology.org/ontology/RXNORM/1311040 | denotes | rice |
| T14 | 92-96 | http://www.ncbi.nlm.nih.gov/taxonomy/4530 | denotes | rice |
| T15 | 102-109 | http://purl.obolibrary.org/obo/CHEBI_11122 | denotes | protein |
| T16 | 102-109 | http://purl.obolibrary.org/obo/SO_0000104 | denotes | protein |
| T17 | 102-109 | http://purl.obolibrary.org/obo/PR_000000001 | denotes | protein |
| T18 | 102-109 | http://purl.obolibrary.org/obo/CHEBI_16541 | denotes | protein |
| T19 | 102-109 | http://purl.obolibrary.org/obo/GO_0003675 | denotes | protein |
| T20 | 102-109 | http://purl.obolibrary.org/obo/CHEBI_36080 | denotes | protein |
| T21 | 110-115 | OSH15 | denotes | OSH15 |
| T22 | 133-142 | http://purl.obolibrary.org/obo/SO_0000856 | denotes | conserved |
| T23 | 163-169 | http://purl.obolibrary.org/obo/SO_0000417 | denotes | domain |
| T24 | 177-180 | http://purl.obolibrary.org/obo/PR_P61517 | denotes | can |
| T25 | 177-180 | http://purl.obolibrary.org/obo/CHEBI_29320 | denotes | can |
| T26 | 177-180 | http://purl.obolibrary.org/obo/CHEBI_91238 | denotes | can |
| T27 | 177-180 | http://purl.obolibrary.org/obo/PR_000034449 | denotes | can |
| T28 | 177-180 | http://purl.obolibrary.org/obo/PR_F4IZC5 | denotes | can |
| T29 | 177-180 | http://id.nlm.nih.gov/mesh/C567382 | denotes | can |
| T30 | 177-180 | http://purl.obolibrary.org/obo/PR_000011515 | denotes | can |
| T31 | 177-180 | http://purl.obolibrary.org/obo/PR_P35658 | denotes | can |
| T32 | 219-222 | http://purl.obolibrary.org/obo/PR_P49258 | denotes | and |
| T33 | 219-222 | http://www.ncbi.nlm.nih.gov/taxonomy/1481724 | denotes | and |
| T34 | 227-228 | AMT1;3 | denotes | 2 |
| T35 | 235-238 | http://www.uniprot.org/uniprot/Q8N801 | denotes | GSE |
| T36 | 235-238 | http://www.uniprot.org/uniprot/P80057 | denotes | GSE |
| T37 | 235-238 | http://www.uniprot.org/uniprot/Q9DAG5 | denotes | GSE |
| T38 | 235-238 | http://www.uniprot.org/uniprot/O48651 | denotes | GSE |
| T39 | 235-238 | http://purl.obolibrary.org/obo/PR_000036934 | denotes | GSE |
| T40 | 235-238 | http://web.expasy.org/cellosaurus/CVCL_6F81 | denotes | GSE |
| T41 | 239-245 | http://purl.obolibrary.org/obo/SO_0000417 | denotes | domain |
| T42 | 251-254 | http://www.ncbi.nlm.nih.gov/taxonomy/9852 | denotes | ELK |
| T43 | 251-254 | http://purl.obolibrary.org/obo/PR_P54762 | denotes | ELK |
| T44 | 251-254 | http://purl.obolibrary.org/obo/PR_000007129 | denotes | ELK |
| T45 | 251-254 | http://www.ncbi.nlm.nih.gov/taxonomy/1574408 | denotes | ELK |
| T46 | 251-254 | http://purl.obolibrary.org/obo/PR_P09759 | denotes | ELK |
| T47 | 251-254 | http://www.uniprot.org/uniprot/P54762 | denotes | ELK |
| T48 | 251-254 | http://www.uniprot.org/uniprot/P09759 | denotes | ELK |
| T49 | 255-261 | http://purl.obolibrary.org/obo/SO_0000417 | denotes | domain |
| T50 | 263-266 | http://purl.obolibrary.org/obo/PR_P49258 | denotes | and |
| T51 | 263-266 | http://www.ncbi.nlm.nih.gov/taxonomy/1481724 | denotes | and |
| T52 | 325-331 | http://purl.obolibrary.org/obo/SO_0000417 | denotes | domain |
| T53 | 359-367 | http://id.nlm.nih.gov/mesh/D011506 | denotes | proteins |
| T54 | 359-367 | http://purl.obolibrary.org/obo/CHEBI_36080 | denotes | proteins |
| T55 | 390-399 | http://purl.obolibrary.org/obo/SO_0000856 | denotes | conserved |
| T56 | 408-411 | http://purl.obolibrary.org/obo/PR_P49258 | denotes | and |
| T57 | 408-411 | http://www.ncbi.nlm.nih.gov/taxonomy/1481724 | denotes | and |
| T58 | 417-425 | http://id.nlm.nih.gov/mesh/D011506 | denotes | proteins |
| T59 | 417-425 | http://purl.obolibrary.org/obo/CHEBI_36080 | denotes | proteins |
| T60 | 448-457 | http://purl.obolibrary.org/obo/SO_0000856 | denotes | conserved |
| T61 | 458-463 | http://purl.obolibrary.org/obo/CHEBI_46882 | denotes | amino |
| T62 | 458-469 | http://purl.bioontology.org/ontology/RXNORM/1873122 | denotes | amino acids |
| T63 | 458-469 | http://id.nlm.nih.gov/mesh/D000596 | denotes | amino acids |
| T64 | 458-469 | http://id.nlm.nih.gov/mesh/D000596 | denotes | amino acids |
| T65 | 458-469 | http://purl.obolibrary.org/obo/CHEBI_33709 | denotes | amino acids |
| T66 | 458-469 | http://purl.obolibrary.org/obo/CHEBI_33704 | denotes | amino acids |
| T67 | 464-469 | http://id.nlm.nih.gov/mesh/D000143 | denotes | acids |
| T68 | 464-469 | http://purl.obolibrary.org/obo/CHEBI_37527 | denotes | acids |
| T69 | 464-469 | http://id.nlm.nih.gov/mesh/D000143 | denotes | acids |
| T70 | 481-491 | http://purl.obolibrary.org/obo/SO_0000781 | denotes | Transgenic |
| T71 | 520-521 | AMT1;3 | denotes | 2 |
| T72 | 522-525 | http://purl.obolibrary.org/obo/PR_P49258 | denotes | and |
| T73 | 522-525 | http://www.ncbi.nlm.nih.gov/taxonomy/1481724 | denotes | and |
| T74 | 529-532 | http://purl.obolibrary.org/obo/SO_0001180 | denotes | are |
| T75 | 529-532 | http://purl.obolibrary.org/obo/SO_0001853 | denotes | are |
| T76 | 543-546 | http://purl.obolibrary.org/obo/PR_Q9NZC7 | denotes | for |
| T77 | 543-546 | http://purl.obolibrary.org/obo/PR_000001036 | denotes | for |
| T78 | 579-582 | http://purl.obolibrary.org/obo/PR_P49258 | denotes | and |
| T79 | 579-582 | http://www.ncbi.nlm.nih.gov/taxonomy/1481724 | denotes | and |
| T80 | 598-601 | http://purl.obolibrary.org/obo/PR_P49258 | denotes | and |
| T81 | 598-601 | http://www.ncbi.nlm.nih.gov/taxonomy/1481724 | denotes | and |
| T82 | 602-605 | http://www.ncbi.nlm.nih.gov/taxonomy/9852 | denotes | ELK |
| T83 | 602-605 | http://purl.obolibrary.org/obo/PR_P54762 | denotes | ELK |
| T84 | 602-605 | http://purl.obolibrary.org/obo/PR_000007129 | denotes | ELK |
| T85 | 602-605 | http://www.ncbi.nlm.nih.gov/taxonomy/1574408 | denotes | ELK |
| T86 | 602-605 | http://purl.obolibrary.org/obo/PR_P09759 | denotes | ELK |
| T87 | 602-605 | http://www.uniprot.org/uniprot/P54762 | denotes | ELK |
| T88 | 602-605 | http://www.uniprot.org/uniprot/P09759 | denotes | ELK |
| T89 | 669-670 | AMT1;3 | denotes | 2 |
| T90 | 671-674 | http://purl.obolibrary.org/obo/PR_P49258 | denotes | and |
| T91 | 671-674 | http://www.ncbi.nlm.nih.gov/taxonomy/1481724 | denotes | and |
| T92 | 678-681 | http://purl.obolibrary.org/obo/SO_0001180 | denotes | are |
| T93 | 678-681 | http://purl.obolibrary.org/obo/SO_0001853 | denotes | are |
| T94 | 692-695 | http://purl.obolibrary.org/obo/PR_Q9NZC7 | denotes | for |
| T95 | 692-695 | http://purl.obolibrary.org/obo/PR_000001036 | denotes | for |
| T96 | 713-716 | http://purl.obolibrary.org/obo/PR_P49258 | denotes | and |
| T97 | 713-716 | http://www.ncbi.nlm.nih.gov/taxonomy/1481724 | denotes | and |
| T98 | 740-743 | http://purl.obolibrary.org/obo/PR_Q9NZC7 | denotes | for |
| T99 | 740-743 | http://purl.obolibrary.org/obo/PR_000001036 | denotes | for |
| T100 | 744-751 | http://purl.obolibrary.org/obo/SO_0100018 | denotes | binding |
| T101 | 744-751 | http://purl.obolibrary.org/obo/GO_0005488 | denotes | binding |
| T102 | 744-751 | http://purl.obolibrary.org/obo/SO_0001091 | denotes | binding |
| T103 | 755-760 | OSH15 | denotes | OSH15 |
| T104 | 775-783 | http://purl.obolibrary.org/obo/SO_0000001 | denotes | sequence |
| T105 | 785-800 | http://purl.obolibrary.org/obo/GO_2000144 | denotes | Transactivation |
| T106 | 839-842 | http://purl.obolibrary.org/obo/PR_P49258 | denotes | and |
| T107 | 839-842 | http://www.ncbi.nlm.nih.gov/taxonomy/1481724 | denotes | and |
| T108 | 843-846 | http://www.ncbi.nlm.nih.gov/taxonomy/9852 | denotes | ELK |
| T109 | 843-846 | http://purl.obolibrary.org/obo/PR_P54762 | denotes | ELK |
| T110 | 843-846 | http://purl.obolibrary.org/obo/PR_000007129 | denotes | ELK |
| T111 | 843-846 | http://www.ncbi.nlm.nih.gov/taxonomy/1574408 | denotes | ELK |
| T112 | 843-846 | http://purl.obolibrary.org/obo/PR_P09759 | denotes | ELK |
| T113 | 843-846 | http://www.uniprot.org/uniprot/P54762 | denotes | ELK |
| T114 | 843-846 | http://www.uniprot.org/uniprot/P09759 | denotes | ELK |
| T115 | 862-866 | http://purl.obolibrary.org/obo/UBERON_2002175 | denotes | role |
| T116 | 862-866 | http://purl.obolibrary.org/obo/CHEBI_50906 | denotes | role |
| T117 | 882-893 | http://purl.obolibrary.org/obo/SO_0001867 | denotes | target gene |
| T118 | 889-893 | http://purl.obolibrary.org/obo/SO_0000704 | denotes | gene |
| T119 | 889-904 | http://purl.obolibrary.org/obo/GO_0010467 | denotes | gene expression |
| T120 | 967-972 | OSH15 | denotes | OSH15 |
| T121 | 998-1001 | http://purl.obolibrary.org/obo/PR_P49258 | denotes | and |
| T122 | 998-1001 | http://www.ncbi.nlm.nih.gov/taxonomy/1481724 | denotes | and |
| T123 | 1002-1005 | http://web.expasy.org/cellosaurus/CVCL_E773 | denotes | may |
| T124 | 1093-1103 | http://purl.obolibrary.org/obo/SO_0000781 | denotes | transgenic |
| T125 | 1093-1110 | http://id.nlm.nih.gov/mesh/D030821 | denotes | transgenic plants |
| T126 | 1104-1110 | http://id.nlm.nih.gov/mesh/D010944 | denotes | plants |
pqqtest_sentence
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| M_0 | 560-578 | cand:funRiceGene:42-developmental abnormality | denotes | abnormal phenotype |
| M_1 | 560-578 | cand:TO:0000754-cardinal organ part morphology trait | denotes | abnormal phenotype |
| M_2 | 560-578 | cand:PECO:0001057-abnormal stratification exposure | denotes | abnormal phenotype |
| M_3 | 560-578 | cand:TO:0002713-cell organelle morphology trait | denotes | abnormal phenotype |
| M_4 | 560-578 | cand:TO:0006009-lodicule morphology trait | denotes | abnormal phenotype |
| M_5 | 560-578 | cand:TO:0000884-petiolule morphology trait | denotes | abnormal phenotype |
| M_6 | 560-578 | cand:PECO:0007044-mineral exposure | denotes | abnormal phenotype |
| M_7 | 560-578 | cand:WTO:0000005-phenotype | denotes | abnormal phenotype |
| M_8 | 560-578 | cand:PO:0006220-central endosperm | denotes | abnormal phenotype |
| M_9 | 560-578 | cand:PO:0025357-pneumatophore | denotes | abnormal phenotype |
| M_10 | 560-578 | cand:PO:0025024-branch node | denotes | abnormal phenotype |
| M_11 | 621-639 | cand:TO:0000322-phenotypic acceptability | denotes | phenotype severity |
| M_12 | 621-639 | cand:TO:0000754-cardinal organ part morphology trait | denotes | phenotype severity |
| M_13 | 621-639 | cand:funRiceGene:127-disease development | denotes | phenotype severity |
| M_14 | 621-639 | cand:TO:0002686-cell growth and development trait | denotes | phenotype severity |
| M_15 | 621-639 | cand:TO:0006009-lodicule morphology trait | denotes | phenotype severity |
| M_16 | 621-639 | cand:TO:0000833-organ margin morphology trait | denotes | phenotype severity |
| M_17 | 621-639 | cand:WTO:0000100-plant precocity | denotes | phenotype severity |
| M_18 | 621-639 | cand:WTO:0000177-photosensitivity | denotes | phenotype severity |
| M_19 | 621-639 | cand:WTO:0000005-phenotype | denotes | phenotype severity |
| M_20 | 621-639 | cand:WTO:0000047-plant density | denotes | phenotype severity |
| M_21 | 621-639 | cand:WTO:0000097-photoperiod | denotes | phenotype severity |
| M_22 | 785-808 | cand:funRiceGene:103-transcription factor | denotes | Transactivation studies |
| M_23 | 785-808 | cand:funRiceGene:25-transcription activator | denotes | Transactivation studies |
| M_24 | 785-808 | cand:funRiceGene:333-transcription suppressor | denotes | Transactivation studies |
| M_25 | 785-808 | cand:funRiceGene:32-transcription regulator | denotes | Transactivation studies |
| M_26 | 785-808 | cand:funRiceGene:228-transcriptional activator | denotes | Transactivation studies |
| M_27 | 785-808 | cand:funRiceGene:16-MYB transcriptional activator | denotes | Transactivation studies |
| M_28 | 785-808 | cand:PO:0003000-transition zone | denotes | Transactivation studies |
| M_29 | 785-808 | cand:TO:0001018-transpiration rate | denotes | Transactivation studies |
| M_30 | 1070-1089 | cand:TO:0000884-petiolule morphology trait | denotes | abnormal morphology |
| M_31 | 1070-1089 | cand:TO:0000867-megasporophyll morphology trait | denotes | abnormal morphology |
| M_32 | 1070-1089 | cand:TO:0000754-cardinal organ part morphology trait | denotes | abnormal morphology |
| M_33 | 1070-1089 | cand:TO:0002713-cell organelle morphology trait | denotes | abnormal morphology |
| M_34 | 1070-1089 | cand:TO:0000764-stalk morphology trait | denotes | abnormal morphology |
| M_35 | 1070-1089 | cand:TO:0000833-organ margin morphology trait | denotes | abnormal morphology |
| M_36 | 1070-1089 | cand:PO:0006216-internal phloem | denotes | abnormal morphology |
| M_37 | 1070-1089 | cand:TO:1000021-plant ovary morphology | denotes | abnormal morphology |
| M_38 | 1070-1089 | cand:WTO:0000044-morphology | denotes | abnormal morphology |
| M_39 | 1070-1089 | cand:funRiceGene:492-vacuolar morphology | denotes | abnormal morphology |
| M_40 | 1070-1089 | cand:TO:0000219-stem morphology | denotes | abnormal morphology |
| M_41 | 592-597 | GeneID:NA | denotes | KNOX1 |
| M_42 | 602-605 | GeneID:NA | denotes | ELK |
| M_43 | 833-838 | GeneID:NA | denotes | KNOX1 |
| M_44 | 967-972 | GeneID:RAPID:Os07g0129700MSUID:LOC_Os07g03770GraID:GR:0061181|GR:0061109 | denotes | OSH15 |
| T63757 | 251-261 | xzyao:34162 | denotes | ELK domain |
| T34682 | 569-578 | WTO:0000005 | denotes | phenotype |
| T66397 | 621-630 | WTO:0000005 | denotes | phenotype |
| T17765 | 458-469 | xzyao:8656 | denotes | amino acids |
| T285 | 156-169 | xzyao:22493 | denotes | MEINOX domain |
| T96010 | 1079-1089 | WTO:0000044 | denotes | morphology |
| T96733 | 1070-1089 | xzyao:13116 | denotes | abnormal morphology |
| T39495 | 81-86 | hunflair:NA:Gene | denotes | OSH15 |
| T73106 | 110-115 | hunflair:NA:Gene | denotes | OSH15 |
| T2620 | 755-760 | hunflair:NA:Gene | denotes | OSH15 |
| T72583 | 967-972 | hunflair:NA:Gene | denotes | OSH15 |
| T83729 | 602-613 | hunflair:NA:Gene | denotes | ELK domains |
| T45208 | 843-854 | hunflair:NA:Gene | denotes | ELK domains |
| T14659 | 251-254 | hunflair:NA:Gene | denotes | ELK |
| T30036 | 602-605 | hunflair:NA:Gene | denotes | ELK |
| T16652 | 843-846 | hunflair:NA:Gene | denotes | ELK |
| T20627 | 55-59 | hunflair:NA:Gene | denotes | KNOX |
| T74384 | 97-101 | hunflair:NA:Gene | denotes | KNOX |
| T78802 | 284-286 | hunflair:NA:Gene | denotes | HD |
| T11402 | 477-479 | hunflair:NA:Gene | denotes | HD |
| T91718 | 526-528 | hunflair:NA:Gene | denotes | HD |
| T74728 | 675-677 | hunflair:NA:Gene | denotes | HD |
| T58072 | 727-729 | hunflair:NA:Gene | denotes | HD |
| T34464 | 213-218 | hunflair:NA:Gene | denotes | KNOX1 |
| T15717 | 592-597 | hunflair:NA:Gene | denotes | KNOX1 |
| T11222 | 833-838 | hunflair:NA:Gene | denotes | KNOX1 |
| T63023 | 223-228 | hunflair:NA:Gene | denotes | KNOX2 |
| T78707 | 516-521 | hunflair:NA:Gene | denotes | KNOX2 |
| T15026 | 665-670 | hunflair:NA:Gene | denotes | KNOX2 |
| T55742 | 284-286 | hunflair:NA:Disease | denotes | HD |
| T27291 | 477-479 | hunflair:NA:Disease | denotes | HD |
| T86013 | 526-528 | hunflair:NA:Disease | denotes | HD |
| T87819 | 675-677 | hunflair:NA:Disease | denotes | HD |
| T56730 | 727-729 | hunflair:NA:Disease | denotes | HD |
| T20279 | 50-54 | hunflair:NA:Species | denotes | rice |
| T42822 | 92-96 | hunflair:NA:Species | denotes | rice |
| T11438 | 50-54 | pubtator:4530:Species | denotes | rice |
| T83842 | 92-96 | pubtator:4530:Species | denotes | rice |
| T10952 | 284-286 | pubtator:MESH:D006816:Disease | denotes | HD |
| T93697 | 477-479 | pubtator:MESH:D006816:Disease | denotes | HD |
| T44740 | 526-528 | pubtator:MESH:D006816:Disease | denotes | HD |
| T54733 | 675-677 | pubtator:MESH:D006816:Disease | denotes | HD |
| T58417 | 727-729 | pubtator:MESH:D006816:Disease | denotes | HD |
21k_plant_trait_mention
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| M_23 | 526-528 | hunflair:NA:Gene | denotes | HD |
| M_24 | 675-677 | hunflair:NA:Gene | denotes | HD |
| M_25 | 727-729 | hunflair:NA:Gene | denotes | HD |
| M_26 | 602-613 | hunflair:NA:Gene | denotes | ELK domains |
| M_27 | 843-854 | hunflair:NA:Gene | denotes | ELK domains |
| M_28 | 81-86 | hunflair:NA:Gene | denotes | OSH15 |
| M_29 | 110-115 | hunflair:NA:Gene | denotes | OSH15 |
| M_30 | 755-760 | hunflair:NA:Gene | denotes | OSH15 |
| M_31 | 967-972 | hunflair:NA:Gene | denotes | OSH15 |
| M_0 | 569-578 | WTO:0000005 | denotes | phenotype |
| M_1 | 621-630 | WTO:0000005 | denotes | phenotype |
| M_2 | 1079-1089 | WTO:0000044 | denotes | morphology |
| M_3 | 223-228 | hunflair:NA:Gene | denotes | KNOX2 |
| M_4 | 516-521 | hunflair:NA:Gene | denotes | KNOX2 |
| M_5 | 665-670 | hunflair:NA:Gene | denotes | KNOX2 |
| M_6 | 50-54 | hunflair:NA:Species | denotes | rice |
| M_7 | 92-96 | hunflair:NA:Species | denotes | rice |
| M_8 | 251-254 | hunflair:NA:Gene | denotes | ELK |
| M_9 | 602-605 | hunflair:NA:Gene | denotes | ELK |
| M_10 | 843-846 | hunflair:NA:Gene | denotes | ELK |
| M_11 | 55-59 | hunflair:NA:Gene | denotes | KNOX |
| M_12 | 97-101 | hunflair:NA:Gene | denotes | KNOX |
| M_13 | 284-286 | hunflair:NA:Disease | denotes | HD |
| M_14 | 477-479 | hunflair:NA:Disease | denotes | HD |
| M_15 | 526-528 | hunflair:NA:Disease | denotes | HD |
| M_16 | 675-677 | hunflair:NA:Disease | denotes | HD |
| M_17 | 727-729 | hunflair:NA:Disease | denotes | HD |
| M_18 | 213-218 | hunflair:NA:Gene | denotes | KNOX1 |
| M_19 | 592-597 | hunflair:NA:Gene | denotes | KNOX1 |
| M_20 | 833-838 | hunflair:NA:Gene | denotes | KNOX1 |
| M_21 | 284-286 | hunflair:NA:Gene | denotes | HD |
| M_22 | 477-479 | hunflair:NA:Gene | denotes | HD |
| M_32 | 50-54 | pubtator:4530:Species | denotes | rice |
| M_33 | 92-96 | pubtator:4530:Species | denotes | rice |
| M_34 | 284-286 | pubtator:MESH:D006816:Disease | denotes | HD |
| M_35 | 477-479 | pubtator:MESH:D006816:Disease | denotes | HD |
| M_36 | 526-528 | pubtator:MESH:D006816:Disease | denotes | HD |
| M_37 | 675-677 | pubtator:MESH:D006816:Disease | denotes | HD |
| M_38 | 727-729 | pubtator:MESH:D006816:Disease | denotes | HD |
OryzaGP_2021_v2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 81-86 | http://identifiers.org/oryzabase.gene/2975 | denotes | OSH15 |
| T2 | 110-115 | http://identifiers.org/oryzabase.gene/2975 | denotes | OSH15 |
| T3 | 235-238 | http://identifiers.org/oryzabase.gene/22696 | denotes | GSE |
| T4 | 755-760 | http://identifiers.org/oryzabase.gene/2975 | denotes | OSH15 |
| T5 | 967-972 | http://identifiers.org/oryzabase.gene/2975 | denotes | OSH15 |
| T45927 | 81-86 | http://identifiers.org/rapdb.locus/Os07g0129700 | denotes | OSH15 |
| T33830 | 110-115 | http://identifiers.org/rapdb.locus/Os07g0129700 | denotes | OSH15 |
| T64777 | 235-238 | http://identifiers.org/rapdb.locus/Os08g0114100 | denotes | GSE |
| T35702 | 755-760 | http://identifiers.org/rapdb.locus/Os07g0129700 | denotes | OSH15 |
| T71771 | 967-972 | http://identifiers.org/rapdb.locus/Os07g0129700 | denotes | OSH15 |
OryzaGP_2022
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 60-79 | http://identifiers.org/oryzabase.gene/15979 | denotes | homeodomain protein |
PMID_GLOBAL
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T1 | 177-180 | DiseaseOrPhenotypicFeature | denotes | can | 0012833 |
| T2 | 284-286 | DiseaseOrPhenotypicFeature | denotes | HD | 0007739 |
| T3 | 477-479 | DiseaseOrPhenotypicFeature | denotes | HD | 0007739 |
| T4 | 526-528 | DiseaseOrPhenotypicFeature | denotes | HD | 0007739 |
| T5 | 675-677 | DiseaseOrPhenotypicFeature | denotes | HD | 0007739 |
| T6 | 727-729 | DiseaseOrPhenotypicFeature | denotes | HD | 0007739 |
OryzaGP_2021_FLAIR
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| M_0 | 223-228 | hunflair:NA:Gene | denotes | KNOX2 |
| M_1 | 516-521 | hunflair:NA:Gene | denotes | KNOX2 |
| M_2 | 665-670 | hunflair:NA:Gene | denotes | KNOX2 |
| M_3 | 251-254 | hunflair:NA:Gene | denotes | ELK |
| M_4 | 602-605 | hunflair:NA:Gene | denotes | ELK |
| M_5 | 843-846 | hunflair:NA:Gene | denotes | ELK |
| M_6 | 284-286 | hunflair:NA:Disease | denotes | HD |
| M_7 | 477-479 | hunflair:NA:Disease | denotes | HD |
| M_8 | 526-528 | hunflair:NA:Disease | denotes | HD |
| M_9 | 675-677 | hunflair:NA:Disease | denotes | HD |
| M_10 | 727-729 | hunflair:NA:Disease | denotes | HD |
| M_11 | 213-218 | hunflair:NA:Gene | denotes | KNOX1 |
| M_12 | 592-597 | hunflair:NA:Gene | denotes | KNOX1 |
| M_13 | 833-838 | hunflair:NA:Gene | denotes | KNOX1 |
| M_14 | 50-54 | hunflair:NA:Species | denotes | rice |
| M_15 | 92-96 | hunflair:NA:Species | denotes | rice |
| M_16 | 55-59 | hunflair:NA:Gene | denotes | KNOX |
| M_17 | 97-101 | hunflair:NA:Gene | denotes | KNOX |
| M_18 | 284-286 | hunflair:NA:Gene | denotes | HD |
| M_19 | 477-479 | hunflair:NA:Gene | denotes | HD |
| M_20 | 526-528 | hunflair:NA:Gene | denotes | HD |
| M_21 | 675-677 | hunflair:NA:Gene | denotes | HD |
| M_22 | 727-729 | hunflair:NA:Gene | denotes | HD |
| M_23 | 602-613 | hunflair:NA:Gene | denotes | ELK domains |
| M_24 | 843-854 | hunflair:NA:Gene | denotes | ELK domains |
| M_25 | 81-86 | hunflair:NA:Gene | denotes | OSH15 |
| M_26 | 110-115 | hunflair:NA:Gene | denotes | OSH15 |
| M_27 | 755-760 | hunflair:NA:Gene | denotes | OSH15 |
| M_28 | 967-972 | hunflair:NA:Gene | denotes | OSH15 |
OryzaGP_2021
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 60-79 | http://identifiers.org/oryzabase.gene/15979 | denotes | homeodomain protein |
| T2 | 81-86 | http://identifiers.org/oryzabase.gene/2975 | denotes | OSH15 |
| T3 | 110-115 | http://identifiers.org/oryzabase.gene/2975 | denotes | OSH15 |
| T4 | 235-238 | http://identifiers.org/oryzabase.gene/22696 | denotes | GSE |
| T5 | 755-760 | http://identifiers.org/oryzabase.gene/2975 | denotes | OSH15 |
| T6 | 967-972 | http://identifiers.org/oryzabase.gene/2975 | denotes | OSH15 |
| T73921 | 60-79 | http://identifiers.org/ricegap/LOC_Os02g05450 | denotes | homeodomain protein |
| T23219 | 81-86 | http://identifiers.org/ricegap/LOC_Os07g03770 | denotes | OSH15 |
| T8106 | 110-115 | http://identifiers.org/ricegap/LOC_Os07g03770 | denotes | OSH15 |
| T72532 | 235-238 | http://identifiers.org/ricegap/LOC_Os08g02210 | denotes | GSE |
| T71559 | 755-760 | http://identifiers.org/ricegap/LOC_Os07g03770 | denotes | OSH15 |
| T91807 | 967-972 | http://identifiers.org/ricegap/LOC_Os07g03770 | denotes | OSH15 |
| T20539 | 60-79 | http://identifiers.org/rapdb.locus/Os02g0147800 | denotes | homeodomain protein |
| T90863 | 81-86 | http://identifiers.org/rapdb.locus/Os07g0129700 | denotes | OSH15 |
| T80 | 110-115 | http://identifiers.org/rapdb.locus/Os07g0129700 | denotes | OSH15 |
| T75253 | 235-238 | http://identifiers.org/rapdb.locus/Os08g0114100 | denotes | GSE |
| T82068 | 755-760 | http://identifiers.org/rapdb.locus/Os07g0129700 | denotes | OSH15 |
| T48261 | 967-972 | http://identifiers.org/rapdb.locus/Os07g0129700 | denotes | OSH15 |
| T15795 | 60-79 | http://identifiers.org/uniprot/B8AHR5 | denotes | homeodomain protein |
| T83234 | 81-86 | http://identifiers.org/uniprot/O80416 | denotes | OSH15 |
| T22403 | 110-115 | http://identifiers.org/uniprot/O80416 | denotes | OSH15 |
| T23902 | 235-238 | http://identifiers.org/uniprot/Q6YXS1 | denotes | GSE |
| T58368 | 755-760 | http://identifiers.org/uniprot/O80416 | denotes | OSH15 |
| T79595 | 967-972 | http://identifiers.org/uniprot/O80416 | denotes | OSH15 |
| M_0 | 223-228 | hunflair:NA:Gene | denotes | KNOX2 |
| M_1 | 516-521 | hunflair:NA:Gene | denotes | KNOX2 |
| M_2 | 665-670 | hunflair:NA:Gene | denotes | KNOX2 |
| M_3 | 251-254 | hunflair:NA:Gene | denotes | ELK |
| M_4 | 602-605 | hunflair:NA:Gene | denotes | ELK |
| M_5 | 843-846 | hunflair:NA:Gene | denotes | ELK |
| M_6 | 284-286 | hunflair:NA:Disease | denotes | HD |
| M_7 | 477-479 | hunflair:NA:Disease | denotes | HD |
| M_8 | 526-528 | hunflair:NA:Disease | denotes | HD |
| M_9 | 675-677 | hunflair:NA:Disease | denotes | HD |
| M_10 | 727-729 | hunflair:NA:Disease | denotes | HD |
| M_11 | 213-218 | hunflair:NA:Gene | denotes | KNOX1 |
| M_12 | 592-597 | hunflair:NA:Gene | denotes | KNOX1 |
| M_13 | 833-838 | hunflair:NA:Gene | denotes | KNOX1 |
| M_14 | 50-54 | hunflair:NA:Species | denotes | rice |
| M_15 | 92-96 | hunflair:NA:Species | denotes | rice |
| M_16 | 55-59 | hunflair:NA:Gene | denotes | KNOX |
| M_17 | 97-101 | hunflair:NA:Gene | denotes | KNOX |
| M_18 | 284-286 | hunflair:NA:Gene | denotes | HD |
| M_19 | 477-479 | hunflair:NA:Gene | denotes | HD |
| M_20 | 526-528 | hunflair:NA:Gene | denotes | HD |
| M_21 | 675-677 | hunflair:NA:Gene | denotes | HD |
| M_22 | 727-729 | hunflair:NA:Gene | denotes | HD |
| M_23 | 602-613 | hunflair:NA:Gene | denotes | ELK domains |
| M_24 | 843-854 | hunflair:NA:Gene | denotes | ELK domains |
| M_25 | 81-86 | hunflair:NA:Gene | denotes | OSH15 |
| M_26 | 110-115 | hunflair:NA:Gene | denotes | OSH15 |
| M_27 | 755-760 | hunflair:NA:Gene | denotes | OSH15 |
| M_28 | 967-972 | hunflair:NA:Gene | denotes | OSH15 |
OryzaGP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 81-86 | gene | denotes | OSH15 |
| T2 | 110-115 | gene | denotes | OSH15 |
| T3 | 755-760 | gene | denotes | OSH15 |
| T4 | 967-972 | gene | denotes | OSH15 |
Oryza_sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-87 | Sentence | denotes | Functional analysis of the conserved domains of a rice KNOX homeodomain protein, OSH15. |
| T2 | 88-288 | Sentence | denotes | The rice KNOX protein OSH15 consists of four conserved domains: the MEINOX domain, which can be divided into two subdomains (KNOX1 and KNOX2); the GSE domain; the ELK domain; and the homeodomain (HD). |
| T3 | 289-480 | Sentence | denotes | To investigate the function of each domain, we generated 10 truncated proteins with deletions in the conserved domains and four proteins with mutations in the conserved amino acids in the HD. |
| T4 | 481-640 | Sentence | denotes | Transgenic analysis suggested that KNOX2 and HD are essential for inducing the abnormal phenotype and that the KNOX1 and ELK domains affect phenotype severity. |
| T5 | 641-784 | Sentence | denotes | We also found that both KNOX2 and HD are necessary for homodimerization and that only HD is needed for binding of OSH15 to its target sequence. |
| T6 | 785-905 | Sentence | denotes | Transactivation studies suggested that both the KNOX1 and ELK domains play a role in suppressing target gene expression. |
| T7 | 906-1111 | Sentence | denotes | On the basis of these findings, we propose that overproduced OSH15 probably acts as a dimer and may ectopically suppress the expression of target genes that induce abnormal morphology in transgenic plants. |