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GlyCosmos6-Glycan-Motif-Image

Id Subject Object Predicate Lexical cue image
T1 9-20 Glycan_Motif denotes chondroitin https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G43702JT
T2 493-504 Glycan_Motif denotes chondroitin https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G43702JT
T3 870-881 Glycan_Motif denotes chondroitin https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G43702JT

sentences

Id Subject Object Predicate Lexical cue
T1 0-132 Sentence denotes Melanoma chondroitin sulfate proteoglycan regulates matrix metalloproteinase-dependent human melanoma invasion into type I collagen.
T2 133-275 Sentence denotes Tumor cell adhesion and proteolysis of the extracellular matrix proteins surrounding the cells are tightly linked processes in tumor invasion.
T3 276-440 Sentence denotes In this study, we sought to identify components of the cell surface of a vertical growth phase melanoma cell line, WM1341D, that mediate invasive cellular behavior.
T4 441-688 Sentence denotes We determined by antisense inhibition that melanoma chondroitin sulfate proteoglycan (MCSP) and membrane-type 3 matrix metalloproteinase (MT3-MMP) expressed on WM1341D are required for invasion of type I collagen and degradation of type I gelatin.
T5 689-794 Sentence denotes MT3-MMP co-immunoprecipitated with MCSP in WM1341D melanoma cells cultured on type I collagen or laminin.
T6 795-1023 Sentence denotes The association between MT3-MMP and MCSP was largely disrupted by removing chondroitin sulfate glycosaminoglycan (CS) from the cell surface, suggesting CS could mediate the association between the two cell surface core proteins.
T7 1024-1159 Sentence denotes Recombinant MT3-MMP and MT3-MMP from whole cell lysates of WM1341D cells were specifically eluted from CS- conjugated affinity columns.
T8 1160-1376 Sentence denotes The results indicate that MT3-MMP possesses the potential to promote melanoma invasion and proteolysis and that the formation of a complex between MT3-MMP and MCSP may be a crucial step in activating these processes.

GlyCosmos6-Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T1 9-20 https://glytoucan.org/Structures/Glycans/G43702JT denotes chondroitin
T2 493-504 https://glytoucan.org/Structures/Glycans/G43702JT denotes chondroitin
T3 870-881 https://glytoucan.org/Structures/Glycans/G43702JT denotes chondroitin

Glycosmos6-GlycoEpitope

Id Subject Object Predicate Lexical cue
T1 9-20 http://www.glycoepitope.jp/epitopes/EP0081 denotes chondroitin
T2 493-504 http://www.glycoepitope.jp/epitopes/EP0081 denotes chondroitin
T3 870-881 http://www.glycoepitope.jp/epitopes/EP0081 denotes chondroitin

mondo_disease

Id Subject Object Predicate Lexical cue mondo_id
T1 0-8 Disease denotes Melanoma http://purl.obolibrary.org/obo/MONDO_0005105
T2 93-101 Disease denotes melanoma http://purl.obolibrary.org/obo/MONDO_0005105
T3 133-138 Disease denotes Tumor http://purl.obolibrary.org/obo/MONDO_0005070
T4 260-265 Disease denotes tumor http://purl.obolibrary.org/obo/MONDO_0005070
T5 371-379 Disease denotes melanoma http://purl.obolibrary.org/obo/MONDO_0005105
T6 484-492 Disease denotes melanoma http://purl.obolibrary.org/obo/MONDO_0005105
T7 740-748 Disease denotes melanoma http://purl.obolibrary.org/obo/MONDO_0005105
T8 1229-1237 Disease denotes melanoma http://purl.obolibrary.org/obo/MONDO_0005105

HP-phenotype

Id Subject Object Predicate Lexical cue hp_id
T1 0-8 Phenotype denotes Melanoma HP:0002861
T2 93-101 Phenotype denotes melanoma HP:0002861
T3 133-138 Phenotype denotes Tumor HP:0002664
T4 260-265 Phenotype denotes tumor HP:0002664
T5 371-379 Phenotype denotes melanoma HP:0002861
T6 484-492 Phenotype denotes melanoma HP:0002861
T7 740-748 Phenotype denotes melanoma HP:0002861
T8 1229-1237 Phenotype denotes melanoma HP:0002861

GlyCosmos-GlycoEpitope

Id Subject Object Predicate Lexical cue glycoepitope_id
T1 9-20 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes chondroitin http://www.glycoepitope.jp/epitopes/EP0081
T2 493-504 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes chondroitin http://www.glycoepitope.jp/epitopes/EP0081
T3 870-881 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes chondroitin http://www.glycoepitope.jp/epitopes/EP0081

GlyCosmos15-HP

Id Subject Object Predicate Lexical cue hp_id
T1 0-8 Phenotype denotes Melanoma HP:0002861
T2 93-101 Phenotype denotes melanoma HP:0002861
T3 133-138 Phenotype denotes Tumor HP:0002664
T4 260-265 Phenotype denotes tumor HP:0002664
T5 371-379 Phenotype denotes melanoma HP:0002861
T6 484-492 Phenotype denotes melanoma HP:0002861
T7 740-748 Phenotype denotes melanoma HP:0002861
T8 1229-1237 Phenotype denotes melanoma HP:0002861

GlyCosmos15-Glycan

Id Subject Object Predicate Lexical cue image
T1 9-20 Glycan denotes chondroitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G43702JT
T2 493-504 Glycan denotes chondroitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G43702JT
T3 870-881 Glycan denotes chondroitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G43702JT

GlyCosmos15-CL

Id Subject Object Predicate Lexical cue cl_id
T1 116-122 Cell denotes type I http://purl.obolibrary.org/obo/CL:0004120|http://purl.obolibrary.org/obo/CL:0004138
T3 133-143 Cell denotes Tumor cell http://purl.obolibrary.org/obo/CL:0001063
T4 638-644 Cell denotes type I http://purl.obolibrary.org/obo/CL:0004120|http://purl.obolibrary.org/obo/CL:0004138
T6 673-679 Cell denotes type I http://purl.obolibrary.org/obo/CL:0004120|http://purl.obolibrary.org/obo/CL:0004138
T8 767-773 Cell denotes type I http://purl.obolibrary.org/obo/CL:0004120|http://purl.obolibrary.org/obo/CL:0004138

GlyCosmos15-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 176-196 Body_part denotes extracellular matrix http://purl.obolibrary.org/obo/GO_0031012
T2 537-545 Body_part denotes membrane http://purl.obolibrary.org/obo/UBERON_0000094

GlyCosmos15-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 0-8 Disease denotes Melanoma MONDO:0005105
T2 93-101 Disease denotes melanoma MONDO:0005105
T3 133-138 Disease denotes Tumor MONDO:0005070
T4 260-265 Disease denotes tumor MONDO:0005070
T5 371-379 Disease denotes melanoma MONDO:0005105
T6 484-492 Disease denotes melanoma MONDO:0005105
T7 740-748 Disease denotes melanoma MONDO:0005105
T8 1229-1237 Disease denotes melanoma MONDO:0005105

GlyCosmos15-GlycoEpitope

Id Subject Object Predicate Lexical cue glycoepitope_id
T1 9-20 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes chondroitin http://www.glycoepitope.jp/epitopes/EP0081
T2 493-504 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes chondroitin http://www.glycoepitope.jp/epitopes/EP0081
T3 870-881 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes chondroitin http://www.glycoepitope.jp/epitopes/EP0081

GlyCosmos15-Taxon

Id Subject Object Predicate Lexical cue db_id
T1 87-92 Organism denotes human 9606

Glycan-GlyCosmos

Id Subject Object Predicate Lexical cue image
T1 9-20 Glycan denotes chondroitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G43702JT
T2 493-504 Glycan denotes chondroitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G43702JT
T3 870-881 Glycan denotes chondroitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G43702JT

GlyCosmos15-Sentences

Id Subject Object Predicate Lexical cue
T1 0-132 Sentence denotes Melanoma chondroitin sulfate proteoglycan regulates matrix metalloproteinase-dependent human melanoma invasion into type I collagen.
T2 133-275 Sentence denotes Tumor cell adhesion and proteolysis of the extracellular matrix proteins surrounding the cells are tightly linked processes in tumor invasion.
T3 276-440 Sentence denotes In this study, we sought to identify components of the cell surface of a vertical growth phase melanoma cell line, WM1341D, that mediate invasive cellular behavior.
T4 441-688 Sentence denotes We determined by antisense inhibition that melanoma chondroitin sulfate proteoglycan (MCSP) and membrane-type 3 matrix metalloproteinase (MT3-MMP) expressed on WM1341D are required for invasion of type I collagen and degradation of type I gelatin.
T5 689-794 Sentence denotes MT3-MMP co-immunoprecipitated with MCSP in WM1341D melanoma cells cultured on type I collagen or laminin.
T6 795-1023 Sentence denotes The association between MT3-MMP and MCSP was largely disrupted by removing chondroitin sulfate glycosaminoglycan (CS) from the cell surface, suggesting CS could mediate the association between the two cell surface core proteins.
T7 1024-1159 Sentence denotes Recombinant MT3-MMP and MT3-MMP from whole cell lysates of WM1341D cells were specifically eluted from CS- conjugated affinity columns.
T8 1160-1376 Sentence denotes The results indicate that MT3-MMP possesses the potential to promote melanoma invasion and proteolysis and that the formation of a complex between MT3-MMP and MCSP may be a crucial step in activating these processes.

GlyCosmos15-FMA

Id Subject Object Predicate Lexical cue db_id
T1 176-196 Body_part denotes extracellular matrix FMA:9672
T2 331-343 Body_part denotes cell surface FMA:67653
T3 922-934 Body_part denotes cell surface FMA:67653
T4 996-1008 Body_part denotes cell surface FMA:67653

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 87-92 OrganismTaxon denotes human 9606

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 176-196 Body_part denotes extracellular matrix http://purl.obolibrary.org/obo/GO_0031012
T2 537-545 Body_part denotes membrane http://purl.obolibrary.org/obo/GO_0016020|http://purl.obolibrary.org/obo/UBERON_0000094|http://purl.obolibrary.org/obo/UBERON_0000158

CL-cell

Id Subject Object Predicate Lexical cue cl_id
T1 116-122 Cell denotes type I http://purl.obolibrary.org/obo/CL:0004120|http://purl.obolibrary.org/obo/CL:0004138
T3 133-143 Cell denotes Tumor cell http://purl.obolibrary.org/obo/CL:0001063
T4 638-644 Cell denotes type I http://purl.obolibrary.org/obo/CL:0004120|http://purl.obolibrary.org/obo/CL:0004138
T6 673-679 Cell denotes type I http://purl.obolibrary.org/obo/CL:0004120|http://purl.obolibrary.org/obo/CL:0004138
T8 767-773 Cell denotes type I http://purl.obolibrary.org/obo/CL:0004120|http://purl.obolibrary.org/obo/CL:0004138