PubMed:11133985
Annnotations
Oryza-OGER
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 2-6 | http://id.nlm.nih.gov/mesh/D012275 | denotes | rice |
| T2 | 2-6 | http://purl.bioontology.org/ontology/RXNORM/1311040 | denotes | rice |
| T3 | 2-6 | http://www.ncbi.nlm.nih.gov/taxonomy/4530 | denotes | rice |
| T4 | 65-68 | http://purl.obolibrary.org/obo/PR_Q9NZC7 | denotes | for |
| T5 | 65-68 | http://purl.obolibrary.org/obo/PR_000001036 | denotes | for |
| T6 | 102-109 | http://purl.obolibrary.org/obo/GO_0051235 | denotes | storage |
| T7 | 102-117 | http://purl.obolibrary.org/obo/GO_0045735 | denotes | storage protein |
| T8 | 102-117 | http://purl.obolibrary.org/obo/GO_0005187 | denotes | storage protein |
| T9 | 110-117 | http://purl.obolibrary.org/obo/CHEBI_11122 | denotes | protein |
| T10 | 110-117 | http://purl.obolibrary.org/obo/SO_0000104 | denotes | protein |
| T11 | 110-117 | http://purl.obolibrary.org/obo/PR_000000001 | denotes | protein |
| T12 | 110-117 | http://purl.obolibrary.org/obo/CHEBI_16541 | denotes | protein |
| T13 | 110-117 | http://purl.obolibrary.org/obo/GO_0003675 | denotes | protein |
| T14 | 110-117 | http://purl.obolibrary.org/obo/CHEBI_36080 | denotes | protein |
| T15 | 132-136 | http://purl.obolibrary.org/obo/PR_Q9M1H3 | denotes | GCN4 |
| T16 | 132-136 | http://purl.obolibrary.org/obo/PR_P03069 | denotes | GCN4 |
| T17 | 137-142 | http://purl.obolibrary.org/obo/SO_0100017 | denotes | motif |
| T18 | 137-142 | http://purl.obolibrary.org/obo/SO_0001067 | denotes | motif |
| T19 | 148-152 | http://purl.obolibrary.org/obo/PR_Q9M1H3 | denotes | GCN4 |
| T20 | 148-152 | http://purl.obolibrary.org/obo/PR_P03069 | denotes | GCN4 |
| T21 | 153-158 | http://purl.obolibrary.org/obo/SO_0100017 | denotes | motif |
| T22 | 153-158 | http://purl.obolibrary.org/obo/SO_0001067 | denotes | motif |
| T23 | 162-165 | http://purl.obolibrary.org/obo/PR_Q9PW70 | denotes | cis |
| T24 | 162-165 | http://purl.obolibrary.org/obo/PR_000005503 | denotes | cis |
| T25 | 162-165 | http://www.uniprot.org/uniprot/Q9NSE2 | denotes | cis |
| T26 | 162-165 | http://purl.obolibrary.org/obo/PR_Q62225 | denotes | cis |
| T27 | 162-165 | http://www.uniprot.org/uniprot/Q62225 | denotes | cis |
| T28 | 162-165 | http://purl.obolibrary.org/obo/UBERON_0035925 | denotes | cis |
| T29 | 162-165 | http://www.uniprot.org/uniprot/O70512 | denotes | cis |
| T30 | 162-165 | http://www.uniprot.org/uniprot/Q2HJ53 | denotes | cis |
| T31 | 162-165 | http://www.uniprot.org/uniprot/Q9PW70 | denotes | cis |
| T32 | 166-173 | http://purl.obolibrary.org/obo/UBERON_0000062 | denotes | element |
| T33 | 166-173 | http://purl.obolibrary.org/obo/CHEBI_33250 | denotes | element |
| T34 | 189-198 | http://purl.obolibrary.org/obo/SO_0000856 | denotes | conserved |
| T35 | 219-225 | http://id.nlm.nih.gov/mesh/D002523 | denotes | cereal |
| T36 | 231-238 | http://purl.obolibrary.org/obo/GO_0051235 | denotes | storage |
| T37 | 231-246 | http://purl.obolibrary.org/obo/GO_0045735 | denotes | storage protein |
| T38 | 231-246 | http://purl.obolibrary.org/obo/GO_0005187 | denotes | storage protein |
| T39 | 239-246 | http://purl.obolibrary.org/obo/CHEBI_11122 | denotes | protein |
| T40 | 239-246 | http://purl.obolibrary.org/obo/SO_0000104 | denotes | protein |
| T41 | 239-246 | http://purl.obolibrary.org/obo/PR_000000001 | denotes | protein |
| T42 | 239-246 | http://purl.obolibrary.org/obo/CHEBI_16541 | denotes | protein |
| T43 | 239-246 | http://purl.obolibrary.org/obo/GO_0003675 | denotes | protein |
| T44 | 239-246 | http://purl.obolibrary.org/obo/CHEBI_36080 | denotes | protein |
| T45 | 270-274 | http://purl.obolibrary.org/obo/UBERON_2002175 | denotes | role |
| T46 | 270-274 | http://purl.obolibrary.org/obo/CHEBI_50906 | denotes | role |
| T47 | 321-325 | http://purl.obolibrary.org/obo/PR_000024065 | denotes | This |
| T48 | 321-325 | http://purl.obolibrary.org/obo/PR_O32583 | denotes | This |
| T49 | 326-331 | http://purl.obolibrary.org/obo/SO_0100017 | denotes | motif |
| T50 | 326-331 | http://purl.obolibrary.org/obo/SO_0001067 | denotes | motif |
| T51 | 351-355 | http://purl.obolibrary.org/obo/SO_0000409 | denotes | site |
| T52 | 351-355 | http://purl.obolibrary.org/obo/SO_0000839 | denotes | site |
| T53 | 351-355 | http://purl.obolibrary.org/obo/SO_0000408 | denotes | site |
| T54 | 356-359 | http://purl.obolibrary.org/obo/PR_Q9NZC7 | denotes | for |
| T55 | 356-359 | http://purl.obolibrary.org/obo/PR_000001036 | denotes | for |
| T56 | 368-375 | http://purl.bioontology.org/ontology/RXNORM/6308 | denotes | leucine |
| T57 | 368-375 | http://purl.obolibrary.org/obo/CHEBI_25017 | denotes | leucine |
| T58 | 368-375 | http://id.nlm.nih.gov/mesh/D007930 | denotes | leucine |
| T59 | 368-375 | http://purl.obolibrary.org/obo/SO_0001437 | denotes | leucine |
| T60 | 368-375 | http://id.nlm.nih.gov/mesh/D007930 | denotes | leucine |
| T61 | 368-375 | http://purl.obolibrary.org/obo/CHEBI_15603 | denotes | leucine |
| T62 | 426-431 | http://purl.obolibrary.org/obo/CHEBI_24433 | denotes | group |
| T63 | 435-440 | http://www.ncbi.nlm.nih.gov/taxonomy/4577 | denotes | maize |
| T64 | 435-440 | http://id.nlm.nih.gov/mesh/D003313 | denotes | maize |
| T65 | 441-447 | FLO1 | denotes | Opaque |
| T66 | 448-449 | AMT1;3 | denotes | 2 |
| T67 | 452-453 | AMT1;3 | denotes | 2 |
| T68 | 460-468 | http://id.nlm.nih.gov/mesh/D011506 | denotes | proteins |
| T69 | 460-468 | http://purl.obolibrary.org/obo/CHEBI_36080 | denotes | proteins |
| T70 | 491-498 | http://purl.bioontology.org/ontology/RXNORM/6308 | denotes | leucine |
| T71 | 491-498 | http://purl.obolibrary.org/obo/CHEBI_25017 | denotes | leucine |
| T72 | 491-498 | http://id.nlm.nih.gov/mesh/D007930 | denotes | leucine |
| T73 | 491-498 | http://purl.obolibrary.org/obo/SO_0001437 | denotes | leucine |
| T74 | 491-498 | http://id.nlm.nih.gov/mesh/D007930 | denotes | leucine |
| T75 | 491-498 | http://purl.obolibrary.org/obo/CHEBI_15603 | denotes | leucine |
| T76 | 506-510 | http://id.nlm.nih.gov/mesh/D018076 | denotes | cDNA |
| T77 | 506-510 | http://purl.obolibrary.org/obo/SO_0000756 | denotes | cDNA |
| T78 | 566-570 | http://id.nlm.nih.gov/mesh/D012275 | denotes | rice |
| T79 | 566-570 | http://purl.bioontology.org/ontology/RXNORM/1311040 | denotes | rice |
| T80 | 566-570 | http://www.ncbi.nlm.nih.gov/taxonomy/4530 | denotes | rice |
| T81 | 576-580 | http://id.nlm.nih.gov/mesh/D018076 | denotes | cDNA |
| T82 | 576-580 | http://purl.obolibrary.org/obo/SO_0000756 | denotes | cDNA |
| T83 | 594-603 | http://purl.obolibrary.org/obo/SO_0000732 | denotes | predicted |
| T84 | 594-608 | http://purl.obolibrary.org/obo/SO_0000996 | denotes | predicted gene |
| T85 | 604-608 | http://purl.obolibrary.org/obo/SO_0000704 | denotes | gene |
| T86 | 618-621 | http://purl.obolibrary.org/obo/PR_P61517 | denotes | can |
| T87 | 618-621 | http://purl.obolibrary.org/obo/CHEBI_29320 | denotes | can |
| T88 | 618-621 | http://purl.obolibrary.org/obo/CHEBI_91238 | denotes | can |
| T89 | 618-621 | http://purl.obolibrary.org/obo/PR_000034449 | denotes | can |
| T90 | 618-621 | http://purl.obolibrary.org/obo/PR_F4IZC5 | denotes | can |
| T91 | 618-621 | http://id.nlm.nih.gov/mesh/C567382 | denotes | can |
| T92 | 618-621 | http://purl.obolibrary.org/obo/PR_000011515 | denotes | can |
| T93 | 618-621 | http://purl.obolibrary.org/obo/PR_P35658 | denotes | can |
| T94 | 664-669 | http://purl.obolibrary.org/obo/CHEBI_46882 | denotes | amino |
| T95 | 664-674 | http://purl.obolibrary.org/obo/SO_0001237 | denotes | amino acid |
| T96 | 664-674 | http://purl.obolibrary.org/obo/CHEBI_33709 | denotes | amino acid |
| T97 | 664-674 | http://purl.obolibrary.org/obo/CHEBI_33704 | denotes | amino acid |
| T98 | 670-674 | http://purl.obolibrary.org/obo/CHEBI_37527 | denotes | acid |
| T99 | 695-698 | http://purl.obolibrary.org/obo/UBERON_0014899 | denotes | all |
| T100 | 695-698 | http://id.nlm.nih.gov/mesh/D054198 | denotes | all |
| T101 | 695-698 | http://purl.obolibrary.org/obo/CHEBI_37690 | denotes | all |
| T102 | 709-717 | http://id.nlm.nih.gov/mesh/D011506 | denotes | proteins |
| T103 | 709-717 | http://purl.obolibrary.org/obo/CHEBI_36080 | denotes | proteins |
| T104 | 718-721 | http://purl.obolibrary.org/obo/SO_0001180 | denotes | are |
| T105 | 718-721 | http://purl.obolibrary.org/obo/SO_0001853 | denotes | are |
| T106 | 748-752 | http://purl.obolibrary.org/obo/PR_Q9M1H3 | denotes | GCN4 |
| T107 | 748-752 | http://purl.obolibrary.org/obo/PR_P03069 | denotes | GCN4 |
| T108 | 753-758 | http://purl.obolibrary.org/obo/SO_0100017 | denotes | motif |
| T109 | 753-758 | http://purl.obolibrary.org/obo/SO_0001067 | denotes | motif |
| T110 | 812-816 | http://purl.obolibrary.org/obo/PR_P24186 | denotes | fold |
| T111 | 812-816 | http://purl.obolibrary.org/obo/PR_Q2FZJ6 | denotes | fold |
| T112 | 812-816 | http://purl.obolibrary.org/obo/PR_000022679 | denotes | fold |
| T113 | 812-816 | http://purl.obolibrary.org/obo/PR_A5I112 | denotes | fold |
| T114 | 858-862 | http://purl.obolibrary.org/obo/SO_0000704 | denotes | gene |
| T115 | 879-887 | http://purl.obolibrary.org/obo/SO_0000167 | denotes | promoter |
| T116 | 894-898 | http://www.uniprot.org/uniprot/A7MBU6 | denotes | to a |
| T117 | 915-919 | http://purl.obolibrary.org/obo/PR_Q9M1H3 | denotes | GCN4 |
| T118 | 915-919 | http://purl.obolibrary.org/obo/PR_P03069 | denotes | GCN4 |
| T119 | 920-925 | http://purl.obolibrary.org/obo/SO_0100017 | denotes | motif |
| T120 | 920-925 | http://purl.obolibrary.org/obo/SO_0001067 | denotes | motif |
| T121 | 927-931 | http://purl.obolibrary.org/obo/SO_0001743 | denotes | Loss |
| T122 | 944-947 | http://purl.obolibrary.org/obo/PR_P49258 | denotes | and |
| T123 | 944-947 | http://www.ncbi.nlm.nih.gov/taxonomy/1481724 | denotes | and |
| T124 | 948-952 | http://purl.obolibrary.org/obo/SO_0001742 | denotes | gain |
| T125 | 987-992 | http://id.nlm.nih.gov/mesh/D015003 | denotes | yeast |
| T126 | 987-992 | http://purl.bioontology.org/ontology/RXNORM/214355 | denotes | yeast |
| T127 | 993-996 | http://purl.obolibrary.org/obo/CHEBI_28260 | denotes | GAL |
| T128 | 993-996 | http://purl.obolibrary.org/obo/PR_P47212 | denotes | GAL |
| T129 | 993-996 | http://purl.obolibrary.org/obo/PR_000007806 | denotes | GAL |
| T130 | 993-996 | http://purl.obolibrary.org/obo/PR_E7EZ53 | denotes | GAL |
| T131 | 993-996 | http://purl.obolibrary.org/obo/PR_Q8N6F7 | denotes | GAL |
| T132 | 993-996 | http://purl.obolibrary.org/obo/PR_P10683 | denotes | GAL |
| T133 | 993-996 | http://purl.obolibrary.org/obo/PR_000007889 | denotes | GAL |
| T134 | 993-996 | http://purl.obolibrary.org/obo/PR_P22466 | denotes | GAL |
| T135 | 993-997 | http://www.uniprot.org/uniprot/P38552 | denotes | GAL4 |
| T136 | 993-997 | http://purl.obolibrary.org/obo/CHEBI_60188 | denotes | GAL4 |
| T137 | 993-997 | http://purl.obolibrary.org/obo/CHEBI_62999 | denotes | GAL4 |
| T138 | 993-997 | http://www.uniprot.org/uniprot/Q3T0D6 | denotes | GAL4 |
| T139 | 993-997 | http://www.uniprot.org/uniprot/Q29058 | denotes | GAL4 |
| T140 | 993-997 | http://purl.obolibrary.org/obo/PR_Q6GXJ1 | denotes | GAL4 |
| T141 | 993-997 | http://purl.obolibrary.org/obo/PR_000009773 | denotes | GAL4 |
| T142 | 993-997 | http://www.uniprot.org/uniprot/Q8K419 | denotes | GAL4 |
| T143 | 993-997 | http://www.uniprot.org/uniprot/P56470 | denotes | GAL4 |
| T144 | 993-997 | http://www.uniprot.org/uniprot/Q6GXJ1 | denotes | GAL4 |
| T145 | 993-997 | http://www.uniprot.org/uniprot/Q6QLR3 | denotes | GAL4 |
| T146 | 993-997 | http://purl.obolibrary.org/obo/PR_P04386 | denotes | GAL4 |
| T147 | 998-1001 | http://id.nlm.nih.gov/mesh/D004247 | denotes | DNA |
| T148 | 998-1001 | http://purl.obolibrary.org/obo/SO_0000352 | denotes | DNA |
| T149 | 998-1001 | http://purl.obolibrary.org/obo/GO_0005574 | denotes | DNA |
| T150 | 998-1001 | http://purl.obolibrary.org/obo/CHEBI_16991 | denotes | DNA |
| T151 | 998-1009 | http://purl.obolibrary.org/obo/GO_0003677 | denotes | DNA binding |
| T152 | 1002-1009 | http://purl.obolibrary.org/obo/SO_0100018 | denotes | binding |
| T153 | 1002-1009 | http://purl.obolibrary.org/obo/GO_0005488 | denotes | binding |
| T154 | 1002-1009 | http://purl.obolibrary.org/obo/SO_0001091 | denotes | binding |
| T155 | 1010-1016 | http://purl.obolibrary.org/obo/SO_0000417 | denotes | domain |
| T156 | 1035-1042 | http://purl.obolibrary.org/obo/SO_0001439 | denotes | proline |
| T157 | 1035-1042 | http://id.nlm.nih.gov/mesh/D011392 | denotes | proline |
| T158 | 1035-1042 | http://purl.bioontology.org/ontology/RXNORM/8737 | denotes | proline |
| T159 | 1035-1042 | http://purl.obolibrary.org/obo/CHEBI_26271 | denotes | proline |
| T160 | 1035-1042 | http://id.nlm.nih.gov/mesh/D011392 | denotes | proline |
| T161 | 1035-1042 | http://purl.obolibrary.org/obo/CHEBI_17203 | denotes | proline |
| T162 | 1043-1047 | http://purl.obolibrary.org/obo/PR_Q9V3C5 | denotes | rich |
| T163 | 1059-1065 | http://purl.obolibrary.org/obo/SO_0000417 | denotes | domain |
| T164 | 1070-1075 | http://purl.obolibrary.org/obo/CHEBI_46882 | denotes | amino |
| T165 | 1070-1081 | http://purl.bioontology.org/ontology/RXNORM/1873122 | denotes | amino acids |
| T166 | 1070-1081 | http://id.nlm.nih.gov/mesh/D000596 | denotes | amino acids |
| T167 | 1070-1081 | http://id.nlm.nih.gov/mesh/D000596 | denotes | amino acids |
| T168 | 1070-1081 | http://purl.obolibrary.org/obo/CHEBI_33709 | denotes | amino acids |
| T169 | 1070-1081 | http://purl.obolibrary.org/obo/CHEBI_33704 | denotes | amino acids |
| T170 | 1076-1081 | http://id.nlm.nih.gov/mesh/D000143 | denotes | acids |
| T171 | 1076-1081 | http://purl.obolibrary.org/obo/CHEBI_37527 | denotes | acids |
| T172 | 1076-1081 | http://id.nlm.nih.gov/mesh/D000143 | denotes | acids |
| T173 | 1108-1111 | http://purl.obolibrary.org/obo/PR_Q9NZC7 | denotes | for |
| T174 | 1108-1111 | http://purl.obolibrary.org/obo/PR_000001036 | denotes | for |
| T175 | 1112-1127 | http://purl.obolibrary.org/obo/GO_2000144 | denotes | transactivation |
| T176 | 1140-1147 | http://purl.obolibrary.org/obo/CHEBI_11122 | denotes | protein |
| T177 | 1140-1147 | http://purl.obolibrary.org/obo/SO_0000104 | denotes | protein |
| T178 | 1140-1147 | http://purl.obolibrary.org/obo/PR_000000001 | denotes | protein |
| T179 | 1140-1147 | http://purl.obolibrary.org/obo/CHEBI_16541 | denotes | protein |
| T180 | 1140-1147 | http://purl.obolibrary.org/obo/GO_0003675 | denotes | protein |
| T181 | 1140-1147 | http://purl.obolibrary.org/obo/CHEBI_36080 | denotes | protein |
| T182 | 1210-1215 | http://www.ncbi.nlm.nih.gov/taxonomy/32644 | denotes | other |
| T183 | 1230-1238 | http://id.nlm.nih.gov/mesh/D011506 | denotes | proteins |
| T184 | 1230-1238 | http://purl.obolibrary.org/obo/CHEBI_36080 | denotes | proteins |
| T185 | 1247-1251 | http://purl.obolibrary.org/obo/SO_0000704 | denotes | gene |
| T186 | 1247-1262 | http://purl.obolibrary.org/obo/GO_0010467 | denotes | gene expression |
| T187 | 1326-1333 | http://purl.obolibrary.org/obo/GO_0051235 | denotes | storage |
| T188 | 1326-1341 | http://purl.obolibrary.org/obo/GO_0045735 | denotes | storage protein |
| T189 | 1326-1341 | http://purl.obolibrary.org/obo/GO_0005187 | denotes | storage protein |
| T190 | 1334-1341 | http://purl.obolibrary.org/obo/CHEBI_11122 | denotes | protein |
| T191 | 1334-1341 | http://purl.obolibrary.org/obo/SO_0000104 | denotes | protein |
| T192 | 1334-1341 | http://purl.obolibrary.org/obo/PR_000000001 | denotes | protein |
| T193 | 1334-1341 | http://purl.obolibrary.org/obo/CHEBI_16541 | denotes | protein |
| T194 | 1334-1341 | http://purl.obolibrary.org/obo/GO_0003675 | denotes | protein |
| T195 | 1334-1341 | http://purl.obolibrary.org/obo/CHEBI_36080 | denotes | protein |
| T196 | 1365-1373 | http://purl.obolibrary.org/obo/SO_0000167 | denotes | promoter |
| T197 | 1374-1377 | http://purl.obolibrary.org/obo/PR_000017371 | denotes | was |
| T198 | 1374-1377 | http://purl.obolibrary.org/obo/PR_P42768 | denotes | was |
| T199 | 1374-1377 | http://purl.obolibrary.org/obo/PR_P70315 | denotes | was |
| T200 | 1374-1377 | http://id.nlm.nih.gov/mesh/D014923 | denotes | was |
| T201 | 1409-1413 | http://purl.obolibrary.org/obo/PR_000022207 | denotes | beta |
| T202 | 1409-1413 | http://purl.obolibrary.org/obo/PR_P17444 | denotes | beta |
| T203 | 1409-1413 | http://purl.obolibrary.org/obo/CHEBI_30225 | denotes | beta |
| T204 | 1409-1413 | http://purl.obolibrary.org/obo/CHEBI_10545 | denotes | beta |
| T205 | 1409-1413 | http://web.expasy.org/cellosaurus/CVCL_R799 | denotes | beta |
| T206 | 1409-1413 | http://purl.obolibrary.org/obo/PR_Q2FV11 | denotes | beta |
| T207 | 1409-1427 | http://www.uniprot.org/uniprot/P08236 | denotes | beta-glucuronidase |
| T208 | 1409-1427 | http://www.uniprot.org/uniprot/O18835 | denotes | beta-glucuronidase |
| T209 | 1409-1427 | http://www.uniprot.org/uniprot/O77695 | denotes | beta-glucuronidase |
| T210 | 1409-1427 | http://www.uniprot.org/uniprot/T2KN75 | denotes | beta-glucuronidase |
| T211 | 1409-1427 | http://www.uniprot.org/uniprot/P12265 | denotes | beta-glucuronidase |
| T212 | 1409-1427 | http://www.uniprot.org/uniprot/Q4FAT7 | denotes | beta-glucuronidase |
| T213 | 1409-1427 | http://www.uniprot.org/uniprot/P05804 | denotes | beta-glucuronidase |
| T214 | 1409-1427 | http://www.uniprot.org/uniprot/O97524 | denotes | beta-glucuronidase |
| T215 | 1409-1427 | http://www.uniprot.org/uniprot/Q7SFB0 | denotes | beta-glucuronidase |
| T216 | 1409-1427 | http://www.uniprot.org/uniprot/P06760 | denotes | beta-glucuronidase |
| T217 | 1409-1427 | http://id.nlm.nih.gov/mesh/D005966 | denotes | beta-glucuronidase |
| T218 | 1409-1427 | http://purl.obolibrary.org/obo/PR_000008358 | denotes | beta-glucuronidase |
| T219 | 1409-1427 | http://www.uniprot.org/uniprot/Q5R5N6 | denotes | beta-glucuronidase |
| T220 | 1409-1427 | http://www.uniprot.org/uniprot/A2QEQ6 | denotes | beta-glucuronidase |
| T221 | 1414-1427 | http://id.nlm.nih.gov/mesh/D005966 | denotes | glucuronidase |
| T222 | 1437-1441 | http://purl.obolibrary.org/obo/SO_0000704 | denotes | gene |
| T223 | 1442-1445 | http://purl.obolibrary.org/obo/PR_P49258 | denotes | and |
| T224 | 1442-1445 | http://www.ncbi.nlm.nih.gov/taxonomy/1481724 | denotes | and |
| T225 | 1459-1463 | http://purl.obolibrary.org/obo/SO_0000704 | denotes | gene |
| T226 | 1464-1467 | http://purl.obolibrary.org/obo/PR_000017371 | denotes | was |
| T227 | 1464-1467 | http://purl.obolibrary.org/obo/PR_P42768 | denotes | was |
| T228 | 1464-1467 | http://purl.obolibrary.org/obo/PR_P70315 | denotes | was |
| T229 | 1464-1467 | http://id.nlm.nih.gov/mesh/D014923 | denotes | was |
| T230 | 1484-1488 | http://id.nlm.nih.gov/mesh/D012275 | denotes | rice |
| T231 | 1484-1488 | http://purl.bioontology.org/ontology/RXNORM/1311040 | denotes | rice |
| T232 | 1484-1488 | http://www.ncbi.nlm.nih.gov/taxonomy/4530 | denotes | rice |
| T233 | 1494-1498 | http://purl.obolibrary.org/obo/PR_000022207 | denotes | beta |
| T234 | 1494-1498 | http://purl.obolibrary.org/obo/PR_P17444 | denotes | beta |
| T235 | 1494-1498 | http://purl.obolibrary.org/obo/CHEBI_30225 | denotes | beta |
| T236 | 1494-1498 | http://purl.obolibrary.org/obo/CHEBI_10545 | denotes | beta |
| T237 | 1494-1498 | http://web.expasy.org/cellosaurus/CVCL_R799 | denotes | beta |
| T238 | 1494-1498 | http://purl.obolibrary.org/obo/PR_Q2FV11 | denotes | beta |
| T239 | 1494-1512 | http://www.uniprot.org/uniprot/P08236 | denotes | beta-glucuronidase |
| T240 | 1494-1512 | http://www.uniprot.org/uniprot/O18835 | denotes | beta-glucuronidase |
| T241 | 1494-1512 | http://www.uniprot.org/uniprot/O77695 | denotes | beta-glucuronidase |
| T242 | 1494-1512 | http://www.uniprot.org/uniprot/T2KN75 | denotes | beta-glucuronidase |
| T243 | 1494-1512 | http://www.uniprot.org/uniprot/P12265 | denotes | beta-glucuronidase |
| T244 | 1494-1512 | http://www.uniprot.org/uniprot/Q4FAT7 | denotes | beta-glucuronidase |
| T245 | 1494-1512 | http://www.uniprot.org/uniprot/P05804 | denotes | beta-glucuronidase |
| T246 | 1494-1512 | http://www.uniprot.org/uniprot/O97524 | denotes | beta-glucuronidase |
| T247 | 1494-1512 | http://www.uniprot.org/uniprot/Q7SFB0 | denotes | beta-glucuronidase |
| T248 | 1494-1512 | http://www.uniprot.org/uniprot/P06760 | denotes | beta-glucuronidase |
| T249 | 1494-1512 | http://id.nlm.nih.gov/mesh/D005966 | denotes | beta-glucuronidase |
| T250 | 1494-1512 | http://purl.obolibrary.org/obo/PR_000008358 | denotes | beta-glucuronidase |
| T251 | 1494-1512 | http://www.uniprot.org/uniprot/Q5R5N6 | denotes | beta-glucuronidase |
| T252 | 1494-1512 | http://www.uniprot.org/uniprot/A2QEQ6 | denotes | beta-glucuronidase |
| T253 | 1499-1512 | http://id.nlm.nih.gov/mesh/D005966 | denotes | glucuronidase |
| T254 | 1513-1517 | http://purl.obolibrary.org/obo/SO_0000704 | denotes | gene |
| T255 | 1547-1555 | http://id.nlm.nih.gov/mesh/C000624173 | denotes | aleurone |
| T256 | 1556-1559 | http://purl.obolibrary.org/obo/PR_P49258 | denotes | and |
| T257 | 1556-1559 | http://www.ncbi.nlm.nih.gov/taxonomy/1481724 | denotes | and |
| T258 | 1572-1577 | http://purl.obolibrary.org/obo/UBERON_0022303 | denotes | layer |
| T259 | 1572-1577 | http://purl.obolibrary.org/obo/UBERON_0000119 | denotes | layer |
| T260 | 1695-1699 | http://purl.obolibrary.org/obo/SO_0000704 | denotes | gene |
| T261 | 1700-1703 | http://web.expasy.org/cellosaurus/CVCL_E773 | denotes | may |
| T262 | 1747-1754 | http://purl.obolibrary.org/obo/GO_0051235 | denotes | storage |
| T263 | 1747-1762 | http://purl.obolibrary.org/obo/GO_0045735 | denotes | storage protein |
| T264 | 1747-1762 | http://purl.obolibrary.org/obo/GO_0005187 | denotes | storage protein |
| T265 | 1755-1762 | http://purl.obolibrary.org/obo/CHEBI_11122 | denotes | protein |
| T266 | 1755-1762 | http://purl.obolibrary.org/obo/SO_0000104 | denotes | protein |
| T267 | 1755-1762 | http://purl.obolibrary.org/obo/PR_000000001 | denotes | protein |
| T268 | 1755-1762 | http://purl.obolibrary.org/obo/CHEBI_16541 | denotes | protein |
| T269 | 1755-1762 | http://purl.obolibrary.org/obo/GO_0003675 | denotes | protein |
| T270 | 1755-1762 | http://purl.obolibrary.org/obo/CHEBI_36080 | denotes | protein |
pqqtest_sentence
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| M_0 | 1718-1739 | cand:PO:0000199-cellular endosperm | denotes | endosperm specificity |
| M_1 | 1718-1739 | cand:PO:0006017-helobial endosperm | denotes | endosperm specificity |
| M_2 | 1718-1739 | cand:PO:0006220-central endosperm | denotes | endosperm specificity |
| M_3 | 1718-1739 | cand:funRiceGene:234-endosperm development | denotes | endosperm specificity |
| M_4 | 1718-1739 | cand:TO:0000587-endosperm quality | denotes | endosperm specificity |
| M_5 | 1718-1739 | cand:WTO:0000219-endosperm texture | denotes | endosperm specificity |
| M_6 | 1718-1739 | cand:PO:0005415-endosperm parenchyma | denotes | endosperm specificity |
| M_7 | 1718-1739 | cand:TO:0000021-copper sensitivity | denotes | endosperm specificity |
| M_8 | 1718-1739 | cand:TO:0000487-endosperm color | denotes | endosperm specificity |
| M_9 | 290-319 | cand:funRiceGene:336-homeobox gene | denotes | endosperm-specific expression |
| M_10 | 290-319 | cand:funRiceGene:16-MYB transcriptional activator | denotes | endosperm-specific expression |
| M_11 | 290-319 | cand:funRiceGene:32-transcription regulator | denotes | endosperm-specific expression |
| M_12 | 290-319 | cand:PO:0000199-cellular endosperm | denotes | endosperm-specific expression |
| M_13 | 290-319 | cand:PO:0000038-primary endosperm cell | denotes | endosperm-specific expression |
| M_14 | 290-319 | cand:funRiceGene:216-transcriptional regulator | denotes | endosperm-specific expression |
| M_15 | 290-319 | cand:PO:0007633-endosperm development stage | denotes | endosperm-specific expression |
| M_16 | 290-319 | cand:funRiceGene:36-ENDOSPERMLESS 1 | denotes | endosperm-specific expression |
| M_17 | 290-319 | cand:PO:0006022-bundle sheath extension | denotes | endosperm-specific expression |
| M_18 | 290-319 | cand:TO:0000231-endospermless | denotes | endosperm-specific expression |
| M_19 | 290-319 | cand:funRiceGene:341-endosperm development | denotes | endosperm-specific expression |
| M_20 | 1688-1699 | GeneID:NA | denotes | RISBZ1 gene |
| M_21 | 148-158 | GeneID:NA | denotes | GCN4 motif |
| T50383 | 998-1016 | xzyao:8775 | denotes | DNA binding domain |
| T1530 | 18-43 | funRiceGene:470, xzyao:11182 | denotes | transcriptional activator |
| T70983 | 1662-1687 | funRiceGene:470, xzyao:11182 | denotes | transcriptional activator |
| T54897 | 102-117 | xzyao:25000 | denotes | storage protein |
| T47020 | 231-246 | xzyao:25000 | denotes | storage protein |
| T63638 | 1326-1341 | xzyao:25000 | denotes | storage protein |
| T626 | 1747-1762 | xzyao:25000 | denotes | storage protein |
| T14799 | 1050-1065 | xzyao:29048 | denotes | terminal domain |
| T9916 | 1585-1605 | xzyao:27494 | denotes | developing endosperm |
| T70278 | 226-230 | PO:0009010, funRiceGene:180 | denotes | seed |
| T29669 | 571-575 | PO:0009010, funRiceGene:180 | denotes | seed |
| T74240 | 1284-1288 | PO:0009010, funRiceGene:180 | denotes | seed |
| T79158 | 1070-1081 | xzyao:8656 | denotes | amino acids |
| T67353 | 262-274 | xzyao:24384 | denotes | central role |
| T29328 | 226-246 | xzyao:36345 | denotes | seed storage protein |
| T94863 | 69-98 | xzyao:11965 | denotes | endosperm-specific expression |
| T65852 | 290-319 | xzyao:11965 | denotes | endosperm-specific expression |
| T62121 | 566-575 | xzyao:29448 | denotes | rice seed |
| T6528 | 383-405 | xzyao:2372 | denotes | transcriptional factor |
| T84168 | 1718-1739 | xzyao:15923 | denotes | endosperm specificity |
| T2468 | 1560-1577 | xzyao:34119 | denotes | subaleurone layer |
| T81475 | 69-78 | PO:0009089, funRiceGene:253 | denotes | endosperm |
| M_22 | 290-299 | PO:0009089, funRiceGene:253 | denotes | endosperm |
| M_23 | 1596-1605 | PO:0009089, funRiceGene:253 | denotes | endosperm |
| M_24 | 1718-1727 | PO:0009089, funRiceGene:253 | denotes | endosperm |
| M_25 | 664-674 | xzyao:10364 | denotes | amino acid |
| M_26 | 987-992 | hunflair:NA:Species | denotes | yeast |
| M_27 | 435-440 | hunflair:NA:Species | denotes | maize |
| M_28 | 132-136 | hunflair:NA:Gene | denotes | GCN4 |
| M_29 | 148-152 | hunflair:NA:Gene | denotes | GCN4 |
| M_30 | 748-752 | hunflair:NA:Gene | denotes | GCN4 |
| M_31 | 915-919 | hunflair:NA:Gene | denotes | GCN4 |
| M_32 | 530-538 | hunflair:NA:Gene | denotes | RISBZ1-5 |
| M_33 | 664-674 | hunflair:NA:Chemical | denotes | amino acid |
| M_34 | 703-708 | hunflair:NA:Gene | denotes | RISBZ |
| M_35 | 1216-1221 | hunflair:NA:Gene | denotes | RISBZ |
| M_36 | 993-997 | hunflair:NA:Gene | denotes | GAL4 |
| M_37 | 45-51 | hunflair:NA:Gene | denotes | RISBZ1 |
| M_38 | 530-536 | hunflair:NA:Gene | denotes | RISBZ1 |
| M_39 | 765-771 | hunflair:NA:Gene | denotes | RISBZ1 |
| M_40 | 1133-1139 | hunflair:NA:Gene | denotes | RISBZ1 |
| M_41 | 1240-1246 | hunflair:NA:Gene | denotes | RISBZ1 |
| M_42 | 1358-1364 | hunflair:NA:Gene | denotes | RISBZ1 |
| M_43 | 1688-1694 | hunflair:NA:Gene | denotes | RISBZ1 |
| M_44 | 132-142 | hunflair:NA:Gene | denotes | GCN4 motif |
| M_45 | 148-158 | hunflair:NA:Gene | denotes | GCN4 motif |
| M_46 | 748-758 | hunflair:NA:Gene | denotes | GCN4 motif |
| M_47 | 915-925 | hunflair:NA:Gene | denotes | GCN4 motif |
| M_48 | 1409-1427 | hunflair:NA:Gene | denotes | beta-glucuronidase |
| M_49 | 1494-1512 | hunflair:NA:Gene | denotes | beta-glucuronidase |
| M_50 | 362-405 | hunflair:NA:Gene | denotes | basic leucine zipper transcriptional factor |
| M_51 | 2-6 | hunflair:NA:Species | denotes | rice |
| M_52 | 566-570 | hunflair:NA:Species | denotes | rice |
| M_53 | 1484-1488 | hunflair:NA:Species | denotes | rice |
| M_54 | 1240-1251 | hunflair:NA:Gene | denotes | RISBZ1 gene |
| M_55 | 1688-1699 | hunflair:NA:Gene | denotes | RISBZ1 gene |
| M_56 | 987-992 | pubtator:4932:Species | denotes | yeast |
| M_57 | 1048-1049 | pubtator:MESH:D009584:Chemical | denotes | N |
| M_58 | 368-375 | pubtator:MESH:C038361:Chemical | denotes | leucine |
| M_59 | 491-498 | pubtator:MESH:C038361:Chemical | denotes | leucine |
| M_60 | 1035-1042 | pubtator:MESH:C489032:Chemical | denotes | proline |
| M_61 | 2-6 | pubtator:4530:Species | denotes | rice |
| M_62 | 566-570 | pubtator:4530:Species | denotes | rice |
| M_63 | 1484-1488 | pubtator:4530:Species | denotes | rice |
| M_64 | 451-453 | pubtator:MESH:D013481:Chemical | denotes | O2 |
| M_65 | 435-440 | pubtator:4577:Species | denotes | maize |
| M_66 | 441-449 | pubtator:MESH:D017438:Chemical | denotes | Opaque-2 |
| M_67 | 993-997 | pubtator:855828:Gene | denotes | GAL4 |
21k_plant_trait_mention
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| M_0 | 1662-1687 | funRiceGene:470, xzyao:2738 | denotes | transcriptional activator |
| M_1 | 1718-1727 | PO:0009089, funRiceGene:253 | denotes | endosperm |
| M_2 | 1718-1739 | xzyao:4794 | denotes | endosperm specificity |
| M_3 | 226-230 | PO:0009010, funRiceGene:180 | denotes | seed |
| M_4 | 571-575 | PO:0009010, funRiceGene:180 | denotes | seed |
| M_5 | 530-538 | hunflair:NA:Gene | denotes | RISBZ1-5 |
| M_6 | 987-992 | hunflair:NA:Species | denotes | yeast |
| M_7 | 132-142 | hunflair:NA:Gene | denotes | GCN4 motif |
| M_8 | 148-158 | hunflair:NA:Gene | denotes | GCN4 motif |
| M_9 | 748-758 | hunflair:NA:Gene | denotes | GCN4 motif |
| M_10 | 915-925 | hunflair:NA:Gene | denotes | GCN4 motif |
| M_11 | 45-51 | hunflair:NA:Gene | denotes | RISBZ1 |
| M_12 | 530-536 | hunflair:NA:Gene | denotes | RISBZ1 |
| M_13 | 765-771 | hunflair:NA:Gene | denotes | RISBZ1 |
| M_14 | 1133-1139 | hunflair:NA:Gene | denotes | RISBZ1 |
| M_15 | 1240-1246 | hunflair:NA:Gene | denotes | RISBZ1 |
| M_16 | 1358-1364 | hunflair:NA:Gene | denotes | RISBZ1 |
| M_17 | 1688-1694 | hunflair:NA:Gene | denotes | RISBZ1 |
| M_18 | 664-674 | hunflair:NA:Chemical | denotes | amino acid |
| M_19 | 2-6 | hunflair:NA:Species | denotes | rice |
| M_20 | 566-570 | hunflair:NA:Species | denotes | rice |
| M_21 | 1484-1488 | hunflair:NA:Species | denotes | rice |
| M_22 | 1409-1427 | hunflair:NA:Gene | denotes | beta-glucuronidase |
| M_23 | 1494-1512 | hunflair:NA:Gene | denotes | beta-glucuronidase |
| M_24 | 362-405 | hunflair:NA:Gene | denotes | basic leucine zipper transcriptional factor |
| M_25 | 703-708 | hunflair:NA:Gene | denotes | RISBZ |
| M_26 | 1216-1221 | hunflair:NA:Gene | denotes | RISBZ |
| M_27 | 993-997 | hunflair:NA:Gene | denotes | GAL4 |
| M_28 | 1240-1251 | hunflair:NA:Gene | denotes | RISBZ1 gene |
| M_29 | 1688-1699 | hunflair:NA:Gene | denotes | RISBZ1 gene |
| M_30 | 132-136 | hunflair:NA:Gene | denotes | GCN4 |
| M_31 | 148-152 | hunflair:NA:Gene | denotes | GCN4 |
| M_32 | 748-752 | hunflair:NA:Gene | denotes | GCN4 |
| M_33 | 915-919 | hunflair:NA:Gene | denotes | GCN4 |
| M_34 | 435-440 | hunflair:NA:Species | denotes | maize |
| M_35 | 451-453 | pubtator:MESH:D013481:Chemical | denotes | O2 |
| M_36 | 987-992 | pubtator:4932:Species | denotes | yeast |
| M_37 | 441-449 | pubtator:MESH:D017438:Chemical | denotes | Opaque-2 |
| M_38 | 993-997 | pubtator:855828:Gene | denotes | GAL4 |
| M_39 | 1048-1049 | pubtator:MESH:D009584:Chemical | denotes | N |
| M_40 | 368-375 | pubtator:MESH:C038361:Chemical | denotes | leucine |
| M_41 | 491-498 | pubtator:MESH:C038361:Chemical | denotes | leucine |
| M_42 | 1035-1042 | pubtator:MESH:C489032:Chemical | denotes | proline |
| M_43 | 2-6 | pubtator:4530:Species | denotes | rice |
| M_44 | 566-570 | pubtator:4530:Species | denotes | rice |
| M_45 | 1484-1488 | pubtator:4530:Species | denotes | rice |
| M_46 | 435-440 | pubtator:4577:Species | denotes | maize |
OryzaGP_2021
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 45-51 | http://identifiers.org/oryzabase.gene/7467 | denotes | RISBZ1 |
| T2 | 530-536 | http://identifiers.org/oryzabase.gene/7467 | denotes | RISBZ1 |
| T3 | 765-771 | http://identifiers.org/oryzabase.gene/7467 | denotes | RISBZ1 |
| T4 | 1133-1139 | http://identifiers.org/oryzabase.gene/7467 | denotes | RISBZ1 |
| T5 | 1240-1246 | http://identifiers.org/oryzabase.gene/7467 | denotes | RISBZ1 |
| T6 | 1358-1364 | http://identifiers.org/oryzabase.gene/7467 | denotes | RISBZ1 |
| T7 | 1688-1694 | http://identifiers.org/oryzabase.gene/7467 | denotes | RISBZ1 |
| T62822 | 45-51 | http://identifiers.org/ricegap/LOC_Os07g08420 | denotes | RISBZ1 |
| T93246 | 530-536 | http://identifiers.org/ricegap/LOC_Os07g08420 | denotes | RISBZ1 |
| T89809 | 765-771 | http://identifiers.org/ricegap/LOC_Os07g08420 | denotes | RISBZ1 |
| T67844 | 1035-1042 | http://identifiers.org/ricegap/LOC_Os07g39680 | denotes | proline |
| T55016 | 1133-1139 | http://identifiers.org/ricegap/LOC_Os07g08420 | denotes | RISBZ1 |
| T16921 | 1240-1246 | http://identifiers.org/ricegap/LOC_Os07g08420 | denotes | RISBZ1 |
| T87069 | 1358-1364 | http://identifiers.org/ricegap/LOC_Os07g08420 | denotes | RISBZ1 |
| T8 | 1688-1694 | http://identifiers.org/ricegap/LOC_Os07g08420 | denotes | RISBZ1 |
| T56900 | 45-51 | http://identifiers.org/rapdb.locus/Os07g0182000 | denotes | RISBZ1 |
| T79628 | 530-536 | http://identifiers.org/rapdb.locus/Os07g0182000 | denotes | RISBZ1 |
| T130 | 765-771 | http://identifiers.org/rapdb.locus/Os07g0182000 | denotes | RISBZ1 |
| T14696 | 1035-1042 | http://identifiers.org/rapdb.locus/Os07g0585500 | denotes | proline |
| T13873 | 1133-1139 | http://identifiers.org/rapdb.locus/Os07g0182000 | denotes | RISBZ1 |
| T26728 | 1240-1246 | http://identifiers.org/rapdb.locus/Os07g0182000 | denotes | RISBZ1 |
| T10758 | 1358-1364 | http://identifiers.org/rapdb.locus/Os07g0182000 | denotes | RISBZ1 |
| T33815 | 1688-1694 | http://identifiers.org/rapdb.locus/Os07g0182000 | denotes | RISBZ1 |
| T91369 | 45-51 | http://identifiers.org/uniprot/Q9AR01 | denotes | RISBZ1 |
| T34534 | 530-536 | http://identifiers.org/uniprot/Q9AR01 | denotes | RISBZ1 |
| T83970 | 765-771 | http://identifiers.org/uniprot/Q9AR01 | denotes | RISBZ1 |
| T40709 | 1133-1139 | http://identifiers.org/uniprot/Q9AR01 | denotes | RISBZ1 |
| T52825 | 1240-1246 | http://identifiers.org/uniprot/Q9AR01 | denotes | RISBZ1 |
| T66961 | 1358-1364 | http://identifiers.org/uniprot/Q9AR01 | denotes | RISBZ1 |
| T25192 | 1688-1694 | http://identifiers.org/uniprot/Q9AR01 | denotes | RISBZ1 |
| M_0 | 1409-1427 | hunflair:NA:Gene | denotes | beta-glucuronidase |
| M_1 | 1494-1512 | hunflair:NA:Gene | denotes | beta-glucuronidase |
| M_2 | 703-708 | hunflair:NA:Gene | denotes | RISBZ |
| M_3 | 1216-1221 | hunflair:NA:Gene | denotes | RISBZ |
| M_4 | 132-142 | hunflair:NA:Gene | denotes | GCN4 motif |
| M_5 | 148-158 | hunflair:NA:Gene | denotes | GCN4 motif |
| M_6 | 748-758 | hunflair:NA:Gene | denotes | GCN4 motif |
| M_7 | 915-925 | hunflair:NA:Gene | denotes | GCN4 motif |
| M_8 | 664-674 | hunflair:NA:Chemical | denotes | amino acid |
| M_9 | 993-997 | hunflair:NA:Gene | denotes | GAL4 |
| M_10 | 2-6 | hunflair:NA:Species | denotes | rice |
| M_11 | 566-570 | hunflair:NA:Species | denotes | rice |
| M_12 | 1484-1488 | hunflair:NA:Species | denotes | rice |
| M_13 | 45-51 | hunflair:NA:Gene | denotes | RISBZ1 |
| M_14 | 530-536 | hunflair:NA:Gene | denotes | RISBZ1 |
| M_15 | 765-771 | hunflair:NA:Gene | denotes | RISBZ1 |
| M_16 | 1133-1139 | hunflair:NA:Gene | denotes | RISBZ1 |
| M_17 | 1240-1246 | hunflair:NA:Gene | denotes | RISBZ1 |
| M_18 | 1358-1364 | hunflair:NA:Gene | denotes | RISBZ1 |
| M_19 | 1688-1694 | hunflair:NA:Gene | denotes | RISBZ1 |
| M_20 | 530-538 | hunflair:NA:Gene | denotes | RISBZ1-5 |
| M_21 | 132-136 | hunflair:NA:Gene | denotes | GCN4 |
| M_22 | 148-152 | hunflair:NA:Gene | denotes | GCN4 |
| M_23 | 748-752 | hunflair:NA:Gene | denotes | GCN4 |
| M_24 | 915-919 | hunflair:NA:Gene | denotes | GCN4 |
| M_25 | 435-440 | hunflair:NA:Species | denotes | maize |
| M_26 | 987-992 | hunflair:NA:Species | denotes | yeast |
| M_27 | 1240-1251 | hunflair:NA:Gene | denotes | RISBZ1 gene |
| M_28 | 1688-1699 | hunflair:NA:Gene | denotes | RISBZ1 gene |
| M_29 | 362-405 | hunflair:NA:Gene | denotes | basic leucine zipper transcriptional factor |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-143 | Sentence | denotes | A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. |
| T2 | 144-320 | Sentence | denotes | The GCN4 motif, a cis-element that is highly conserved in the promoters of cereal seed storage protein genes, plays a central role in controlling endosperm-specific expression. |
| T3 | 321-469 | Sentence | denotes | This motif is the recognition site for a basic leucine zipper transcriptional factor that belongs to the group of maize Opaque-2 (O2)-like proteins. |
| T4 | 470-589 | Sentence | denotes | Five different basic leucine zipper cDNA clones, designated RISBZ1-5, have been isolated from a rice seed cDNA library. |
| T5 | 590-685 | Sentence | denotes | The predicted gene products can be divided into two groups based on their amino acid sequences. |
| T6 | 686-926 | Sentence | denotes | Although all the RISBZ proteins are able to interact with the GCN4 motif, only RISBZ1 is capable of activating (more than 100-fold expression) the expression of a reporter gene under a minimal promoter fused to a pentamer of the GCN4 motif. |
| T7 | 927-1128 | Sentence | denotes | Loss-of-function and gain-of-function experiments using the yeast GAL4 DNA binding domain revealed that the proline-rich N-terminal domain (27 amino acids in length) is responsible for transactivation. |
| T8 | 1129-1239 | Sentence | denotes | The RISBZ1 protein is capable of forming homodimers as well as heterodimers with other RISBZ subunit proteins. |
| T9 | 1240-1348 | Sentence | denotes | RISBZ1 gene expression is restricted to the seed, where it precedes the expression of storage protein genes. |
| T10 | 1349-1606 | Sentence | denotes | When the RISBZ1 promoter was transcriptionally fused to the beta-glucuronidase reporter gene and the chimeric gene was introduced into rice, the beta-glucuronidase gene is specifically expressed in aleurone and subaleurone layer of the developing endosperm. |
| T11 | 1607-1769 | Sentence | denotes | These findings suggest that the specific expression of transcriptional activator RISBZ1 gene may determine the endosperm specificity of the storage protein genes. |
Glycosmos6-MAT
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 69-78 | http://purl.obolibrary.org/obo/MAT_0000227 | denotes | endosperm |
| T2 | 290-299 | http://purl.obolibrary.org/obo/MAT_0000227 | denotes | endosperm |
| T3 | 1596-1605 | http://purl.obolibrary.org/obo/MAT_0000227 | denotes | endosperm |
| T4 | 1718-1727 | http://purl.obolibrary.org/obo/MAT_0000227 | denotes | endosperm |
OryzaGP_2021_v2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 45-51 | http://identifiers.org/oryzabase.gene/7467 | denotes | RISBZ1 |
| T2 | 530-536 | http://identifiers.org/oryzabase.gene/7467 | denotes | RISBZ1 |
| T3 | 765-771 | http://identifiers.org/oryzabase.gene/7467 | denotes | RISBZ1 |
| T4 | 1133-1139 | http://identifiers.org/oryzabase.gene/7467 | denotes | RISBZ1 |
| T5 | 1240-1246 | http://identifiers.org/oryzabase.gene/7467 | denotes | RISBZ1 |
| T6 | 1358-1364 | http://identifiers.org/oryzabase.gene/7467 | denotes | RISBZ1 |
| T7 | 1688-1694 | http://identifiers.org/oryzabase.gene/7467 | denotes | RISBZ1 |
| T38808 | 45-51 | http://identifiers.org/rapdb.locus/Os07g0182000 | denotes | RISBZ1 |
| T63437 | 530-536 | http://identifiers.org/rapdb.locus/Os07g0182000 | denotes | RISBZ1 |
| T72435 | 765-771 | http://identifiers.org/rapdb.locus/Os07g0182000 | denotes | RISBZ1 |
| T34241 | 1133-1139 | http://identifiers.org/rapdb.locus/Os07g0182000 | denotes | RISBZ1 |
| T16170 | 1240-1246 | http://identifiers.org/rapdb.locus/Os07g0182000 | denotes | RISBZ1 |
| T51281 | 1358-1364 | http://identifiers.org/rapdb.locus/Os07g0182000 | denotes | RISBZ1 |
| T75020 | 1688-1694 | http://identifiers.org/rapdb.locus/Os07g0182000 | denotes | RISBZ1 |
OryzaGP_2021_FLAIR
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| M_0 | 1409-1427 | hunflair:NA:Gene | denotes | beta-glucuronidase |
| M_1 | 1494-1512 | hunflair:NA:Gene | denotes | beta-glucuronidase |
| M_2 | 703-708 | hunflair:NA:Gene | denotes | RISBZ |
| M_3 | 1216-1221 | hunflair:NA:Gene | denotes | RISBZ |
| M_4 | 132-142 | hunflair:NA:Gene | denotes | GCN4 motif |
| M_5 | 148-158 | hunflair:NA:Gene | denotes | GCN4 motif |
| M_6 | 748-758 | hunflair:NA:Gene | denotes | GCN4 motif |
| M_7 | 915-925 | hunflair:NA:Gene | denotes | GCN4 motif |
| M_8 | 664-674 | hunflair:NA:Chemical | denotes | amino acid |
| M_9 | 993-997 | hunflair:NA:Gene | denotes | GAL4 |
| M_10 | 2-6 | hunflair:NA:Species | denotes | rice |
| M_11 | 566-570 | hunflair:NA:Species | denotes | rice |
| M_12 | 1484-1488 | hunflair:NA:Species | denotes | rice |
| M_13 | 45-51 | hunflair:NA:Gene | denotes | RISBZ1 |
| M_14 | 530-536 | hunflair:NA:Gene | denotes | RISBZ1 |
| M_15 | 765-771 | hunflair:NA:Gene | denotes | RISBZ1 |
| M_16 | 1133-1139 | hunflair:NA:Gene | denotes | RISBZ1 |
| M_17 | 1240-1246 | hunflair:NA:Gene | denotes | RISBZ1 |
| M_18 | 1358-1364 | hunflair:NA:Gene | denotes | RISBZ1 |
| M_19 | 1688-1694 | hunflair:NA:Gene | denotes | RISBZ1 |
| M_20 | 530-538 | hunflair:NA:Gene | denotes | RISBZ1-5 |
| M_21 | 132-136 | hunflair:NA:Gene | denotes | GCN4 |
| M_22 | 148-152 | hunflair:NA:Gene | denotes | GCN4 |
| M_23 | 748-752 | hunflair:NA:Gene | denotes | GCN4 |
| M_24 | 915-919 | hunflair:NA:Gene | denotes | GCN4 |
| M_25 | 435-440 | hunflair:NA:Species | denotes | maize |
| M_26 | 987-992 | hunflair:NA:Species | denotes | yeast |
| M_27 | 1240-1251 | hunflair:NA:Gene | denotes | RISBZ1 gene |
| M_28 | 1688-1699 | hunflair:NA:Gene | denotes | RISBZ1 gene |
| M_29 | 362-405 | hunflair:NA:Gene | denotes | basic leucine zipper transcriptional factor |
OryzaGP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 530-536 | gene | denotes | RISBZ1 |
| T2 | 1133-1139 | gene | denotes | RISBZ1 |
| T3 | 1240-1246 | gene | denotes | RISBZ1 |
| T4 | 1358-1364 | gene | denotes | RISBZ1 |
| T5 | 1688-1694 | gene | denotes | RISBZ1 |
Oryza_sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-143 | Sentence | denotes | A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. |
| T2 | 144-320 | Sentence | denotes | The GCN4 motif, a cis-element that is highly conserved in the promoters of cereal seed storage protein genes, plays a central role in controlling endosperm-specific expression. |
| T3 | 321-469 | Sentence | denotes | This motif is the recognition site for a basic leucine zipper transcriptional factor that belongs to the group of maize Opaque-2 (O2)-like proteins. |
| T4 | 470-589 | Sentence | denotes | Five different basic leucine zipper cDNA clones, designated RISBZ1-5, have been isolated from a rice seed cDNA library. |
| T5 | 590-685 | Sentence | denotes | The predicted gene products can be divided into two groups based on their amino acid sequences. |
| T6 | 686-926 | Sentence | denotes | Although all the RISBZ proteins are able to interact with the GCN4 motif, only RISBZ1 is capable of activating (more than 100-fold expression) the expression of a reporter gene under a minimal promoter fused to a pentamer of the GCN4 motif. |
| T7 | 927-1128 | Sentence | denotes | Loss-of-function and gain-of-function experiments using the yeast GAL4 DNA binding domain revealed that the proline-rich N-terminal domain (27 amino acids in length) is responsible for transactivation. |
| T8 | 1129-1239 | Sentence | denotes | The RISBZ1 protein is capable of forming homodimers as well as heterodimers with other RISBZ subunit proteins. |
| T9 | 1240-1348 | Sentence | denotes | RISBZ1 gene expression is restricted to the seed, where it precedes the expression of storage protein genes. |
| T10 | 1349-1606 | Sentence | denotes | When the RISBZ1 promoter was transcriptionally fused to the beta-glucuronidase reporter gene and the chimeric gene was introduced into rice, the beta-glucuronidase gene is specifically expressed in aleurone and subaleurone layer of the developing endosperm. |
| T11 | 1607-1769 | Sentence | denotes | These findings suggest that the specific expression of transcriptional activator RISBZ1 gene may determine the endosperm specificity of the storage protein genes. |
NCBITAXON
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| T1 | 2-6 | OrganismTaxon | denotes | rice | 4530 |
| T2 | 435-440 | OrganismTaxon | denotes | maize | 4577 |
| T3 | 566-570 | OrganismTaxon | denotes | rice | 4530 |
| T4 | 1484-1488 | OrganismTaxon | denotes | rice | 4530 |
Anatomy-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 1572-1577 | Body_part | denotes | layer | http://purl.obolibrary.org/obo/UBERON_0000119|http://purl.obolibrary.org/obo/UBERON_0022303 |
Anatomy-MAT
| Id | Subject | Object | Predicate | Lexical cue | mat_id |
|---|---|---|---|---|---|
| T1 | 69-78 | Body_part | denotes | endosperm | http://purl.obolibrary.org/obo/MAT_0000227 |
| T2 | 290-299 | Body_part | denotes | endosperm | http://purl.obolibrary.org/obo/MAT_0000227 |
| T3 | 1596-1605 | Body_part | denotes | endosperm | http://purl.obolibrary.org/obo/MAT_0000227 |
| T4 | 1718-1727 | Body_part | denotes | endosperm | http://purl.obolibrary.org/obo/MAT_0000227 |