> top > docs > PubMed:11030747 > annotations

PubMed:11030747 JSONTXT

Annnotations TAB JSON ListView MergeView

GlycoBiology-FMA

Id Subject Object Predicate Lexical cue
_T1 22-40 FMAID:196779 denotes lipopolysaccharide
_T2 22-40 FMAID:82785 denotes lipopolysaccharide
_T3 22-40 FMAID:82746 denotes lipopolysaccharide
_T4 22-40 FMAID:196735 denotes lipopolysaccharide
_T5 80-98 FMAID:82746 denotes lipopolysaccharide
_T6 80-98 FMAID:196735 denotes lipopolysaccharide
_T7 80-98 FMAID:82785 denotes lipopolysaccharide
_T8 80-98 FMAID:196779 denotes lipopolysaccharide
_T9 160-178 FMAID:82785 denotes lipopolysaccharide
_T10 160-178 FMAID:82746 denotes lipopolysaccharide
_T11 160-178 FMAID:196779 denotes lipopolysaccharide
_T12 160-178 FMAID:196735 denotes lipopolysaccharide
_T13 699-713 FMAID:196779 denotes polysaccharide
_T14 699-713 FMAID:82785 denotes polysaccharide
_T15 699-713 FMAID:196735 denotes polysaccharide
_T16 699-713 FMAID:82746 denotes polysaccharide
_T17 1099-1113 FMAID:196779 denotes polysaccharide
_T18 1099-1113 FMAID:82785 denotes polysaccharide
_T19 1099-1113 FMAID:82746 denotes polysaccharide
_T20 1099-1113 FMAID:196735 denotes polysaccharide

GlycoBiology-NCBITAXON

Id Subject Object Predicate Lexical cue
T1 46-59 http://purl.bioontology.org/ontology/NCBITAXON/764685 denotes symbiotically
T2 632-640 http://purl.bioontology.org/ontology/NCBITAXON/82115 denotes rhizobia

GO-BP

Id Subject Object Predicate Lexical cue
T1 592-595 http://purl.obolibrary.org/obo/GO_0016210 denotes DOC

EDAM-DFO

Id Subject Object Predicate Lexical cue
T1 592-595 http://edamontology.org/format_3506 denotes DOC
T2 641-649 http://edamontology.org/operation_3435 denotes normally
T3 990-1000 http://edamontology.org/operation_3434 denotes Conversely
T4 1562-1567 http://edamontology.org/operation_3454 denotes phase
T5 1562-1567 http://edamontology.org/data_2336 denotes phase
T6 1802-1810 http://edamontology.org/operation_2945 denotes analysis

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-147 Sentence denotes The type and yield of lipopolysaccharide from symbiotically deficient rhizobium lipopolysaccharide mutants vary depending on the extraction method.
TextSentencer_T2 148-266 Sentence denotes At least 18 lipopolysaccharide (LPS) extraction methods are available, and no single method is universally applicable.
TextSentencer_T3 267-482 Sentence denotes Here, the LPSs from four R.etli, one R.leguminosarum bv. trifolii mutant, 24AR, and the R.etli parent strain, CE3, were isolated by hot phenol/water (phi;/W), and phenol/EDTA/triethylamine (phi/EDTA/TEA) extraction.
TextSentencer_T4 483-625 Sentence denotes The LPS in various preparations was quantified, analyzed by deoxycholate polyacrylamide gel electrophoresis (DOC-PAGE), and by immunoblotting.
TextSentencer_T5 626-742 Sentence denotes These rhizobia normally have two prominent LPS forms: LPS I, which has O-polysaccharide, and LPS II, which has none.
TextSentencer_T6 743-852 Sentence denotes The LPS forms obtained depend on the method of extraction and vary depending on the mutant that is extracted.
TextSentencer_T7 853-900 Sentence denotes Both methods extract LPS I and LPS II from CE3.
TextSentencer_T8 901-989 Sentence denotes The phi/EDTA/TEA, but not the phi/W, method extracts LPS I from mutants CE358 and CE359.
TextSentencer_T9 990-1247 Sentence denotes Conversely, the phi;/W but not the phi;/EDTA/TEA method extracts CE359 LPS V, an LPS form with a truncated O-polysaccharide. phi/EDTA/TEA extraction of mutant CE406 gives good yields of LPS I and II, while phi/W extraction gives very small amounts of LPS I.
TextSentencer_T10 1248-1426 Sentence denotes The LPS yield from all the strains using phi/EDTA/TEA extraction is fairly consistent (3-fold range), while the yields from phi/W extraction are highly variable (850-fold range).
TextSentencer_T11 1427-1599 Sentence denotes The phi/EDTA/TEA method extracts LPS I and LPS II from mutant 24AR, but the phi/W method partitions LPS II exclusively into the phenol phase, making its recovery difficult.
TextSentencer_T12 1600-1758 Sentence denotes Overall, phi/EDTA/TEA extraction yields more forms of LPS from the mutants and provides a simpler, faster, and less hazardous alternative to phi/W extraction.
TextSentencer_T13 1759-1881 Sentence denotes Nevertheless, it is concluded that careful analysis of any LPS mutant requires the use of more than one extraction method.
T1 0-147 Sentence denotes The type and yield of lipopolysaccharide from symbiotically deficient rhizobium lipopolysaccharide mutants vary depending on the extraction method.
T2 148-266 Sentence denotes At least 18 lipopolysaccharide (LPS) extraction methods are available, and no single method is universally applicable.
T3 267-482 Sentence denotes Here, the LPSs from four R.etli, one R.leguminosarum bv. trifolii mutant, 24AR, and the R.etli parent strain, CE3, were isolated by hot phenol/water (phi;/W), and phenol/EDTA/triethylamine (phi/EDTA/TEA) extraction.
T4 483-625 Sentence denotes The LPS in various preparations was quantified, analyzed by deoxycholate polyacrylamide gel electrophoresis (DOC-PAGE), and by immunoblotting.
T5 626-742 Sentence denotes These rhizobia normally have two prominent LPS forms: LPS I, which has O-polysaccharide, and LPS II, which has none.
T6 743-852 Sentence denotes The LPS forms obtained depend on the method of extraction and vary depending on the mutant that is extracted.
T7 853-900 Sentence denotes Both methods extract LPS I and LPS II from CE3.
T8 901-989 Sentence denotes The phi/EDTA/TEA, but not the phi/W, method extracts LPS I from mutants CE358 and CE359.
T9 990-1426 Sentence denotes Conversely, the phi;/W but not the phi;/EDTA/TEA method extracts CE359 LPS V, an LPS form with a truncated O-polysaccharide. phi/EDTA/TEA extraction of mutant CE406 gives good yields of LPS I and II, while phi/W extraction gives very small amounts of LPS I. The LPS yield from all the strains using phi/EDTA/TEA extraction is fairly consistent (3-fold range), while the yields from phi/W extraction are highly variable (850-fold range).
T10 1427-1599 Sentence denotes The phi/EDTA/TEA method extracts LPS I and LPS II from mutant 24AR, but the phi/W method partitions LPS II exclusively into the phenol phase, making its recovery difficult.
T11 1600-1758 Sentence denotes Overall, phi/EDTA/TEA extraction yields more forms of LPS from the mutants and provides a simpler, faster, and less hazardous alternative to phi/W extraction.
T12 1759-1881 Sentence denotes Nevertheless, it is concluded that careful analysis of any LPS mutant requires the use of more than one extraction method.
T1 0-147 Sentence denotes The type and yield of lipopolysaccharide from symbiotically deficient rhizobium lipopolysaccharide mutants vary depending on the extraction method.
T2 148-266 Sentence denotes At least 18 lipopolysaccharide (LPS) extraction methods are available, and no single method is universally applicable.
T3 267-482 Sentence denotes Here, the LPSs from four R.etli, one R.leguminosarum bv. trifolii mutant, 24AR, and the R.etli parent strain, CE3, were isolated by hot phenol/water (phi;/W), and phenol/EDTA/triethylamine (phi/EDTA/TEA) extraction.
T4 483-625 Sentence denotes The LPS in various preparations was quantified, analyzed by deoxycholate polyacrylamide gel electrophoresis (DOC-PAGE), and by immunoblotting.
T5 626-742 Sentence denotes These rhizobia normally have two prominent LPS forms: LPS I, which has O-polysaccharide, and LPS II, which has none.
T6 743-852 Sentence denotes The LPS forms obtained depend on the method of extraction and vary depending on the mutant that is extracted.
T7 853-900 Sentence denotes Both methods extract LPS I and LPS II from CE3.
T8 901-989 Sentence denotes The phi/EDTA/TEA, but not the phi/W, method extracts LPS I from mutants CE358 and CE359.
T9 990-1247 Sentence denotes Conversely, the phi;/W but not the phi;/EDTA/TEA method extracts CE359 LPS V, an LPS form with a truncated O-polysaccharide. phi/EDTA/TEA extraction of mutant CE406 gives good yields of LPS I and II, while phi/W extraction gives very small amounts of LPS I.
T10 1248-1426 Sentence denotes The LPS yield from all the strains using phi/EDTA/TEA extraction is fairly consistent (3-fold range), while the yields from phi/W extraction are highly variable (850-fold range).
T11 1427-1599 Sentence denotes The phi/EDTA/TEA method extracts LPS I and LPS II from mutant 24AR, but the phi/W method partitions LPS II exclusively into the phenol phase, making its recovery difficult.
T12 1600-1758 Sentence denotes Overall, phi/EDTA/TEA extraction yields more forms of LPS from the mutants and provides a simpler, faster, and less hazardous alternative to phi/W extraction.
T13 1759-1881 Sentence denotes Nevertheless, it is concluded that careful analysis of any LPS mutant requires the use of more than one extraction method.

GlycoBiology-Motifs

Id Subject Object Predicate Lexical cue
T1 180-183 http://rdf.glycoinfo.org/glycan/G00022MO denotes LPS
T2 487-490 http://rdf.glycoinfo.org/glycan/G00022MO denotes LPS
T3 669-672 http://rdf.glycoinfo.org/glycan/G00022MO denotes LPS
T4 680-683 http://rdf.glycoinfo.org/glycan/G00022MO denotes LPS
T5 719-722 http://rdf.glycoinfo.org/glycan/G00022MO denotes LPS
T6 747-750 http://rdf.glycoinfo.org/glycan/G00022MO denotes LPS
T7 874-877 http://rdf.glycoinfo.org/glycan/G00022MO denotes LPS
T8 884-887 http://rdf.glycoinfo.org/glycan/G00022MO denotes LPS
T9 954-957 http://rdf.glycoinfo.org/glycan/G00022MO denotes LPS
T10 1061-1064 http://rdf.glycoinfo.org/glycan/G00022MO denotes LPS
T11 1071-1074 http://rdf.glycoinfo.org/glycan/G00022MO denotes LPS
T12 1176-1179 http://rdf.glycoinfo.org/glycan/G00022MO denotes LPS
T13 1241-1244 http://rdf.glycoinfo.org/glycan/G00022MO denotes LPS
T14 1252-1255 http://rdf.glycoinfo.org/glycan/G00022MO denotes LPS
T15 1460-1463 http://rdf.glycoinfo.org/glycan/G00022MO denotes LPS
T16 1470-1473 http://rdf.glycoinfo.org/glycan/G00022MO denotes LPS
T17 1527-1530 http://rdf.glycoinfo.org/glycan/G00022MO denotes LPS
T18 1654-1657 http://rdf.glycoinfo.org/glycan/G00022MO denotes LPS
T19 1818-1821 http://rdf.glycoinfo.org/glycan/G00022MO denotes LPS

GlyTouCan-IUPAC

Id Subject Object Predicate Lexical cue
GlycanIUPAC_T1 1267-1270 "http://rdf.glycoinfo.org/glycan/G41652MJ" denotes all
GlycanIUPAC_T2 1267-1270 "http://rdf.glycoinfo.org/glycan/G20761YC" denotes all
GlycanIUPAC_T3 1267-1270 "http://rdf.glycoinfo.org/glycan/G19807HM" denotes all
GlycanIUPAC_T4 1267-1270 "http://rdf.glycoinfo.org/glycan/G20351TE" denotes all
GlycanIUPAC_T5 1267-1270 "http://rdf.glycoinfo.org/glycan/G71957MR" denotes all
GlycanIUPAC_T6 1267-1270 "http://rdf.glycoinfo.org/glycan/G59040AE" denotes all
GlycanIUPAC_T7 1267-1270 "http://rdf.glycoinfo.org/glycan/G14987PW" denotes all
GlycanIUPAC_T8 1267-1270 "http://rdf.glycoinfo.org/glycan/G95064PC" denotes all
GlycanIUPAC_T9 1267-1270 "http://rdf.glycoinfo.org/glycan/G39143AQ" denotes all
GlycanIUPAC_T10 1267-1270 "http://rdf.glycoinfo.org/glycan/G65149OO" denotes all
GlycanIUPAC_T11 1267-1270 "http://rdf.glycoinfo.org/glycan/G02766SY" denotes all
GlycanIUPAC_T12 1267-1270 "http://rdf.glycoinfo.org/glycan/G26019KJ" denotes all
GlycanIUPAC_T13 1267-1270 "http://rdf.glycoinfo.org/glycan/G36429CZ" denotes all
GlycanIUPAC_T14 1267-1270 "http://rdf.glycoinfo.org/glycan/G89633TP" denotes all
GlycanIUPAC_T15 1267-1270 "http://rdf.glycoinfo.org/glycan/G28494FO" denotes all
GlycanIUPAC_T16 1267-1270 "http://rdf.glycoinfo.org/glycan/G06219CP" denotes all
GlycanIUPAC_T17 1267-1270 "http://rdf.glycoinfo.org/glycan/G44237SM" denotes all
GlycanIUPAC_T18 1267-1270 "http://rdf.glycoinfo.org/glycan/G57948RL" denotes all
GlycanIUPAC_T19 1267-1270 "http://rdf.glycoinfo.org/glycan/G64016DN" denotes all
GlycanIUPAC_T20 1267-1270 "http://rdf.glycoinfo.org/glycan/G14536PC" denotes all
GlycanIUPAC_T21 1267-1270 "http://rdf.glycoinfo.org/glycan/G14356FW" denotes all
GlycanIUPAC_T22 1267-1270 "http://rdf.glycoinfo.org/glycan/G34565UO" denotes all
GlycanIUPAC_T23 1267-1270 "http://rdf.glycoinfo.org/glycan/G67124MW" denotes all
GlycanIUPAC_T24 1267-1270 "http://rdf.glycoinfo.org/glycan/G71457ZU" denotes all
GlycanIUPAC_T25 1267-1270 "http://rdf.glycoinfo.org/glycan/G55228VZ" denotes all
GlycanIUPAC_T26 1267-1270 "http://rdf.glycoinfo.org/glycan/G31034MJ" denotes all
GlycanIUPAC_T27 1267-1270 "http://rdf.glycoinfo.org/glycan/G25776IP" denotes all
GlycanIUPAC_T28 1267-1270 "http://rdf.glycoinfo.org/glycan/G64442BV" denotes all
GlycanIUPAC_T29 1267-1270 "http://rdf.glycoinfo.org/glycan/G57018LE" denotes all
GlycanIUPAC_T30 1267-1270 "http://rdf.glycoinfo.org/glycan/G61761GX" denotes all
GlycanIUPAC_T31 1267-1270 "http://rdf.glycoinfo.org/glycan/G76318UX" denotes all
GlycanIUPAC_T32 1267-1270 "http://rdf.glycoinfo.org/glycan/G61906ER" denotes all
GlycanIUPAC_T33 1267-1270 "http://rdf.glycoinfo.org/glycan/G68723GR" denotes all
GlycanIUPAC_T34 1267-1270 "http://rdf.glycoinfo.org/glycan/G19540LE" denotes all
GlycanIUPAC_T35 1267-1270 "http://rdf.glycoinfo.org/glycan/G74944PO" denotes all
GlycanIUPAC_T36 1267-1270 "http://rdf.glycoinfo.org/glycan/G89489ZJ" denotes all
GlycanIUPAC_T37 1267-1270 "http://rdf.glycoinfo.org/glycan/G04434YU" denotes all
GlycanIUPAC_T38 1267-1270 "http://rdf.glycoinfo.org/glycan/G21450PB" denotes all
GlycanIUPAC_T39 1267-1270 "http://rdf.glycoinfo.org/glycan/G93629QY" denotes all
GlycanIUPAC_T40 1267-1270 "http://rdf.glycoinfo.org/glycan/G02603TR" denotes all
GlycanIUPAC_T41 1267-1270 "http://rdf.glycoinfo.org/glycan/G40280JP" denotes all
GlycanIUPAC_T42 1267-1270 "http://rdf.glycoinfo.org/glycan/G95259IC" denotes all
GlycanIUPAC_T43 1267-1270 "http://rdf.glycoinfo.org/glycan/G26900FE" denotes all
GlycanIUPAC_T44 1267-1270 "http://rdf.glycoinfo.org/glycan/G21346KK" denotes all
GlycanIUPAC_T45 1267-1270 "http://rdf.glycoinfo.org/glycan/G62509FF" denotes all
GlycanIUPAC_T46 1267-1270 "http://rdf.glycoinfo.org/glycan/G83932AK" denotes all
GlycanIUPAC_T47 1267-1270 "http://rdf.glycoinfo.org/glycan/G96978IB" denotes all
GlycanIUPAC_T48 1267-1270 "http://rdf.glycoinfo.org/glycan/G34275DN" denotes all
GlycanIUPAC_T49 1267-1270 "http://rdf.glycoinfo.org/glycan/G07071JF" denotes all
GlycanIUPAC_T50 1267-1270 "http://rdf.glycoinfo.org/glycan/G80639QD" denotes all
GlycanIUPAC_T51 1267-1270 "http://rdf.glycoinfo.org/glycan/G99460PJ" denotes all
GlycanIUPAC_T52 1267-1270 "http://rdf.glycoinfo.org/glycan/G22024BZ" denotes all
GlycanIUPAC_T53 1267-1270 "http://rdf.glycoinfo.org/glycan/G74097ZY" denotes all
GlycanIUPAC_T54 1267-1270 "http://rdf.glycoinfo.org/glycan/G84439YP" denotes all
GlycanIUPAC_T55 1267-1270 "http://rdf.glycoinfo.org/glycan/G52207WQ" denotes all
GlycanIUPAC_T56 1267-1270 "http://rdf.glycoinfo.org/glycan/G90695MS" denotes all
GlycanIUPAC_T57 1267-1270 "http://rdf.glycoinfo.org/glycan/G50398QX" denotes all
GlycanIUPAC_T58 1267-1270 "http://rdf.glycoinfo.org/glycan/G12166ZT" denotes all
GlycanIUPAC_T59 1267-1270 "http://rdf.glycoinfo.org/glycan/G48368BR" denotes all
GlycanIUPAC_T60 1267-1270 "http://rdf.glycoinfo.org/glycan/G57407RW" denotes all
GlycanIUPAC_T61 1267-1270 "http://rdf.glycoinfo.org/glycan/G00386TY" denotes all
GlycanIUPAC_T62 1267-1270 "http://rdf.glycoinfo.org/glycan/G18723JK" denotes all
GlycanIUPAC_T63 1267-1270 "http://rdf.glycoinfo.org/glycan/G93757OR" denotes all
GlycanIUPAC_T64 1267-1270 "http://rdf.glycoinfo.org/glycan/G29006SI" denotes all
GlycanIUPAC_T65 1267-1270 "http://rdf.glycoinfo.org/glycan/G03099OQ" denotes all
GlycanIUPAC_T66 1267-1270 "http://rdf.glycoinfo.org/glycan/G53739OW" denotes all
GlycanIUPAC_T67 1267-1270 "http://rdf.glycoinfo.org/glycan/G70440ZO" denotes all
GlycanIUPAC_T68 1267-1270 "http://rdf.glycoinfo.org/glycan/G29951RR" denotes all
GlycanIUPAC_T69 1267-1270 "http://rdf.glycoinfo.org/glycan/G58402TI" denotes all
GlycanIUPAC_T70 1267-1270 "http://rdf.glycoinfo.org/glycan/G39875TP" denotes all
GlycanIUPAC_T71 1267-1270 "http://rdf.glycoinfo.org/glycan/G83439QV" denotes all
GlycanIUPAC_T72 1267-1270 "http://rdf.glycoinfo.org/glycan/G41762RC" denotes all
GlycanIUPAC_T73 1267-1270 "http://rdf.glycoinfo.org/glycan/G91604UI" denotes all
GlycanIUPAC_T74 1267-1270 "http://rdf.glycoinfo.org/glycan/G88447WE" denotes all
GlycanIUPAC_T75 1267-1270 "http://rdf.glycoinfo.org/glycan/G93634BS" denotes all
GlycanIUPAC_T76 1267-1270 "http://rdf.glycoinfo.org/glycan/G02587BH" denotes all
GlycanIUPAC_T77 1267-1270 "http://rdf.glycoinfo.org/glycan/G43511MX" denotes all
GlycanIUPAC_T78 1267-1270 "http://rdf.glycoinfo.org/glycan/G64958DH" denotes all
GlycanIUPAC_T79 1267-1270 "http://rdf.glycoinfo.org/glycan/G30384TR" denotes all
GlycanIUPAC_T80 1267-1270 "http://rdf.glycoinfo.org/glycan/G15624EX" denotes all
GlycanIUPAC_T81 1267-1270 "http://rdf.glycoinfo.org/glycan/G22706ST" denotes all
GlycanIUPAC_T82 1267-1270 "http://rdf.glycoinfo.org/glycan/G57408PI" denotes all
GlycanIUPAC_T83 1267-1270 "http://rdf.glycoinfo.org/glycan/G86403XX" denotes all
GlycanIUPAC_T84 1267-1270 "http://rdf.glycoinfo.org/glycan/G78043YB" denotes all
GlycanIUPAC_T85 1267-1270 "http://rdf.glycoinfo.org/glycan/G18952JK" denotes all
GlycanIUPAC_T86 1267-1270 "http://rdf.glycoinfo.org/glycan/G49020ND" denotes all
GlycanIUPAC_T87 1267-1270 "http://rdf.glycoinfo.org/glycan/G63590YW" denotes all
GlycanIUPAC_T88 1267-1270 "http://rdf.glycoinfo.org/glycan/G22793KS" denotes all
GlycanIUPAC_T89 1267-1270 "http://rdf.glycoinfo.org/glycan/G64134SS" denotes all
GlycanIUPAC_T90 1267-1270 "http://rdf.glycoinfo.org/glycan/G17338HY" denotes all
GlycanIUPAC_T91 1267-1270 "http://rdf.glycoinfo.org/glycan/G99745XF" denotes all
GlycanIUPAC_T92 1267-1270 "http://rdf.glycoinfo.org/glycan/G27782HN" denotes all
GlycanIUPAC_T93 1267-1270 "http://rdf.glycoinfo.org/glycan/G57496DC" denotes all
GlycanIUPAC_T94 1267-1270 "http://rdf.glycoinfo.org/glycan/G93169WB" denotes all
GlycanIUPAC_T95 1267-1270 "http://rdf.glycoinfo.org/glycan/G05518TD" denotes all
GlycanIUPAC_T96 1267-1270 "http://rdf.glycoinfo.org/glycan/G62603DN" denotes all
GlycanIUPAC_T97 1267-1270 "http://rdf.glycoinfo.org/glycan/G59574FS" denotes all
GlycanIUPAC_T98 1267-1270 "http://rdf.glycoinfo.org/glycan/G47567WC" denotes all

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 70-79 OrganismTaxon denotes rhizobium 379
T2 659-668 OrganismTaxon denotes prominent 37571